Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13545 and HMPREF1078_RS13550 are separated by 176 nucleotides HMPREF1078_RS13550 and HMPREF1078_RS13555 are separated by 64 nucleotides HMPREF1078_RS13555 and HMPREF1078_RS13560 are separated by 5 nucleotides
HMPREF1078_RS13545: HMPREF1078_RS13545 - diaminopimelate decarboxylase, at 155,616 to 156,776
_RS13545
HMPREF1078_RS13550: HMPREF1078_RS13550 - aspartate kinase, at 156,953 to 158,272
_RS13550
HMPREF1078_RS13555: HMPREF1078_RS13555 - ATP-binding cassette domain-containing protein, at 158,337 to 159,014
_RS13555
HMPREF1078_RS13560: HMPREF1078_RS13560 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 159,020 to 159,616
_RS13560
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.012 kb on + strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.120 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.335 kb on + strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.346 kb on - strand, within HMPREF1078_RS13545 at 156.359 kb on + strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.586 kb on + strand, within HMPREF1078_RS13545 at 156.587 kb on - strand, within HMPREF1078_RS13545 at 156.596 kb on + strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.637 kb on + strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.655 kb on + strand, within HMPREF1078_RS13545 at 156.680 kb on + strand at 156.705 kb on + strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.708 kb on - strand at 156.713 kb on - strand at 156.768 kb on + strand at 156.769 kb on - strand at 156.771 kb on + strand at 156.811 kb on - strand at 156.812 kb on + strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.816 kb on + strand at 156.816 kb on + strand at 156.817 kb on - strand at 156.832 kb on - strand at 156.843 kb on + strand at 156.844 kb on - strand at 156.847 kb on + strand at 156.847 kb on + strand at 156.922 kb on - strand at 156.954 kb on + strand at 156.962 kb on - strand at 156.972 kb on - strand at 156.983 kb on + strand at 157.038 kb on + strand at 157.039 kb on - strand at 157.039 kb on - strand at 157.053 kb on + strand at 157.053 kb on + strand at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.118 kb on - strand, within HMPREF1078_RS13550 at 157.137 kb on - strand, within HMPREF1078_RS13550 at 157.147 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.157 kb on - strand, within HMPREF1078_RS13550 at 157.247 kb on + strand, within HMPREF1078_RS13550 at 157.336 kb on + strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.366 kb on + strand, within HMPREF1078_RS13550 at 157.472 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.616 kb on + strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.732 kb on + strand, within HMPREF1078_RS13550 at 157.734 kb on + strand, within HMPREF1078_RS13550 at 157.735 kb on - strand, within HMPREF1078_RS13550 at 157.776 kb on - strand, within HMPREF1078_RS13550 at 157.787 kb on - strand, within HMPREF1078_RS13550 at 157.798 kb on + strand, within HMPREF1078_RS13550 at 157.798 kb on + strand, within HMPREF1078_RS13550 at 157.840 kb on + strand, within HMPREF1078_RS13550 at 157.840 kb on + strand, within HMPREF1078_RS13550 at 157.841 kb on - strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.842 kb on + strand, within HMPREF1078_RS13550 at 157.843 kb on - strand, within HMPREF1078_RS13550 at 157.890 kb on + strand, within HMPREF1078_RS13550 at 157.890 kb on + strand, within HMPREF1078_RS13550 at 157.890 kb on + strand, within HMPREF1078_RS13550 at 157.891 kb on - strand, within HMPREF1078_RS13550 at 157.891 kb on - strand, within HMPREF1078_RS13550 at 158.004 kb on - strand, within HMPREF1078_RS13550 at 158.004 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.027 kb on - strand, within HMPREF1078_RS13550 at 158.028 kb on + strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.029 kb on - strand, within HMPREF1078_RS13550 at 158.044 kb on - strand, within HMPREF1078_RS13550 at 158.065 kb on - strand, within HMPREF1078_RS13550 at 158.067 kb on + strand, within HMPREF1078_RS13550 at 158.068 kb on - strand, within HMPREF1078_RS13550 at 158.084 kb on - strand, within HMPREF1078_RS13550 at 158.084 kb on - strand, within HMPREF1078_RS13550 at 158.180 kb on + strand at 158.181 kb on - strand at 158.181 kb on - strand at 158.188 kb on + strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.281 kb on - strand at 158.284 kb on - strand at 158.284 kb on - strand at 158.355 kb on + strand at 158.377 kb on - strand at 158.392 kb on + strand at 158.392 kb on + strand at 158.396 kb on + strand at 158.396 kb on + strand at 158.397 kb on - strand at 158.397 kb on - strand at 158.397 kb on - strand at 158.411 kb on - strand, within HMPREF1078_RS13555 at 158.460 kb on + strand, within HMPREF1078_RS13555 at 158.469 kb on + strand, within HMPREF1078_RS13555 at 158.603 kb on + strand, within HMPREF1078_RS13555 at 158.613 kb on - strand, within HMPREF1078_RS13555 at 158.810 kb on + strand, within HMPREF1078_RS13555 at 158.812 kb on + strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.813 kb on - strand, within HMPREF1078_RS13555 at 158.934 kb on - strand, within HMPREF1078_RS13555 at 158.975 kb on + strand at 158.976 kb on - strand at 158.976 kb on - strand at 158.979 kb on + strand at 158.979 kb on + strand at 159.019 kb on - strand at 159.019 kb on - strand at 159.029 kb on - strand at 159.089 kb on + strand, within HMPREF1078_RS13560 at 159.089 kb on + strand, within HMPREF1078_RS13560 at 159.185 kb on + strand, within HMPREF1078_RS13560 at 159.200 kb on - strand, within HMPREF1078_RS13560 at 159.234 kb on + strand, within HMPREF1078_RS13560
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 156,012 + HMPREF1078_RS13545 0.34 +0.4 156,013 - HMPREF1078_RS13545 0.34 -2.4 156,013 - HMPREF1078_RS13545 0.34 -0.6 156,120 + HMPREF1078_RS13545 0.43 -1.8 156,188 + HMPREF1078_RS13545 0.49 -1.4 156,188 + HMPREF1078_RS13545 0.49 -0.9 156,188 + HMPREF1078_RS13545 0.49 -2.1 156,188 + HMPREF1078_RS13545 0.49 -2.2 156,188 + HMPREF1078_RS13545 0.49 -1.4 156,188 + HMPREF1078_RS13545 0.49 -2.4 156,189 - HMPREF1078_RS13545 0.49 -1.5 156,189 - HMPREF1078_RS13545 0.49 -0.2 156,195 - HMPREF1078_RS13545 0.50 -1.8 156,195 - HMPREF1078_RS13545 0.50 -0.8 156,195 - HMPREF1078_RS13545 0.50 -2.3 156,236 + HMPREF1078_RS13545 0.53 -2.8 156,236 + HMPREF1078_RS13545 0.53 -1.9 156,262 - HMPREF1078_RS13545 0.56 +0.1 156,262 - HMPREF1078_RS13545 0.56 -2.2 156,335 + HMPREF1078_RS13545 0.62 -3.0 156,336 - HMPREF1078_RS13545 0.62 -0.2 156,336 - HMPREF1078_RS13545 0.62 -2.9 156,336 - HMPREF1078_RS13545 0.62 -1.8 156,346 - HMPREF1078_RS13545 0.63 -4.4 156,359 + HMPREF1078_RS13545 0.64 -2.1 156,360 - HMPREF1078_RS13545 0.64 -2.9 156,360 - HMPREF1078_RS13545 0.64 -2.2 156,436 - HMPREF1078_RS13545 0.71 -1.3 156,436 - HMPREF1078_RS13545 0.71 -2.5 156,586 + HMPREF1078_RS13545 0.84 +0.4 156,587 - HMPREF1078_RS13545 0.84 -2.0 156,596 + HMPREF1078_RS13545 0.84 -2.0 156,600 - HMPREF1078_RS13545 0.85 -2.8 156,600 - HMPREF1078_RS13545 0.85 -2.5 156,637 + HMPREF1078_RS13545 0.88 -0.2 156,638 - HMPREF1078_RS13545 0.88 -2.4 156,638 - HMPREF1078_RS13545 0.88 -2.9 156,655 + HMPREF1078_RS13545 0.89 +1.4 156,680 + -2.8 156,705 + -3.4 156,705 + -2.1 156,706 - -1.2 156,708 - -2.5 156,713 - +1.4 156,768 + -2.1 156,769 - -2.2 156,771 + -2.9 156,811 - +0.3 156,812 + +0.1 156,813 - +0.1 156,813 - -0.3 156,813 - +0.8 156,816 + -1.8 156,816 + +0.8 156,817 - +2.2 156,832 - +1.4 156,843 + -2.6 156,844 - -0.9 156,847 + -2.5 156,847 + -0.4 156,922 - -0.6 156,954 + -1.6 156,962 - -1.2 156,972 - -1.6 156,983 + +0.8 157,038 + -1.1 157,039 - +1.0 157,039 - -1.3 157,053 + -1.6 157,053 + -3.6 157,096 + HMPREF1078_RS13550 0.11 -2.6 157,096 + HMPREF1078_RS13550 0.11 -2.8 157,096 + HMPREF1078_RS13550 0.11 -0.2 157,118 - HMPREF1078_RS13550 0.12 +1.4 157,137 - HMPREF1078_RS13550 0.14 -2.3 157,147 + HMPREF1078_RS13550 0.15 -0.8 157,156 + HMPREF1078_RS13550 0.15 -2.4 157,156 + HMPREF1078_RS13550 0.15 -2.5 157,157 - HMPREF1078_RS13550 0.15 -2.2 157,247 + HMPREF1078_RS13550 0.22 -1.5 157,336 + HMPREF1078_RS13550 0.29 +2.4 157,337 - HMPREF1078_RS13550 0.29 -3.9 157,337 - HMPREF1078_RS13550 0.29 -1.8 157,337 - HMPREF1078_RS13550 0.29 -0.4 157,366 + HMPREF1078_RS13550 0.31 -1.5 157,472 - HMPREF1078_RS13550 0.39 -1.6 157,533 - HMPREF1078_RS13550 0.44 +1.5 157,533 - HMPREF1078_RS13550 0.44 +0.4 157,616 + HMPREF1078_RS13550 0.50 -1.4 157,629 - HMPREF1078_RS13550 0.51 -2.2 157,629 - HMPREF1078_RS13550 0.51 -1.7 157,732 + HMPREF1078_RS13550 0.59 -0.2 157,734 + HMPREF1078_RS13550 0.59 -0.9 157,735 - HMPREF1078_RS13550 0.59 -0.5 157,776 - HMPREF1078_RS13550 0.62 -1.3 157,787 - HMPREF1078_RS13550 0.63 +1.8 157,798 + HMPREF1078_RS13550 0.64 -2.8 157,798 + HMPREF1078_RS13550 0.64 -2.9 157,840 + HMPREF1078_RS13550 0.67 -0.4 157,840 + HMPREF1078_RS13550 0.67 -1.1 157,841 - HMPREF1078_RS13550 0.67 -0.4 157,842 + HMPREF1078_RS13550 0.67 -0.2 157,842 + HMPREF1078_RS13550 0.67 -0.6 157,842 + HMPREF1078_RS13550 0.67 +1.4 157,842 + HMPREF1078_RS13550 0.67 -2.2 157,843 - HMPREF1078_RS13550 0.67 -2.5 157,890 + HMPREF1078_RS13550 0.71 -0.9 157,890 + HMPREF1078_RS13550 0.71 -1.5 157,890 + HMPREF1078_RS13550 0.71 -0.8 157,891 - HMPREF1078_RS13550 0.71 -3.5 157,891 - HMPREF1078_RS13550 0.71 -1.6 158,004 - HMPREF1078_RS13550 0.80 -1.8 158,004 - HMPREF1078_RS13550 0.80 -1.3 158,027 - HMPREF1078_RS13550 0.81 -1.9 158,027 - HMPREF1078_RS13550 0.81 +0.1 158,027 - HMPREF1078_RS13550 0.81 -2.4 158,027 - HMPREF1078_RS13550 0.81 +0.8 158,028 + HMPREF1078_RS13550 0.81 -1.1 158,029 - HMPREF1078_RS13550 0.82 -1.5 158,029 - HMPREF1078_RS13550 0.82 -0.1 158,029 - HMPREF1078_RS13550 0.82 -0.9 158,044 - HMPREF1078_RS13550 0.83 +0.1 158,065 - HMPREF1078_RS13550 0.84 -2.8 158,067 + HMPREF1078_RS13550 0.84 +0.8 158,068 - HMPREF1078_RS13550 0.84 -0.8 158,084 - HMPREF1078_RS13550 0.86 -0.6 158,084 - HMPREF1078_RS13550 0.86 -0.5 158,180 + -0.2 158,181 - -1.6 158,181 - -1.9 158,188 + -3.0 158,189 - +0.8 158,189 - -1.1 158,189 - -0.4 158,189 - -3.9 158,281 - -0.8 158,284 - +0.5 158,284 - -0.6 158,355 + -0.7 158,377 - -0.5 158,392 + -0.9 158,392 + -1.9 158,396 + +0.2 158,396 + -0.4 158,397 - -2.6 158,397 - +0.5 158,397 - -0.4 158,411 - HMPREF1078_RS13555 0.11 -1.4 158,460 + HMPREF1078_RS13555 0.18 -1.1 158,469 + HMPREF1078_RS13555 0.19 -0.6 158,603 + HMPREF1078_RS13555 0.39 -0.1 158,613 - HMPREF1078_RS13555 0.41 +0.5 158,810 + HMPREF1078_RS13555 0.70 -0.8 158,812 + HMPREF1078_RS13555 0.70 +1.8 158,813 - HMPREF1078_RS13555 0.70 -0.3 158,813 - HMPREF1078_RS13555 0.70 +1.2 158,813 - HMPREF1078_RS13555 0.70 +0.6 158,934 - HMPREF1078_RS13555 0.88 +0.3 158,975 + -0.8 158,976 - -1.6 158,976 - -1.2 158,979 + +0.2 158,979 + -0.6 159,019 - +1.1 159,019 - -1.8 159,029 - +0.7 159,089 + HMPREF1078_RS13560 0.12 -1.0 159,089 + HMPREF1078_RS13560 0.12 +2.4 159,185 + HMPREF1078_RS13560 0.28 -1.3 159,200 - HMPREF1078_RS13560 0.30 -1.9 159,234 + HMPREF1078_RS13560 0.36 -0.2
Or see this region's nucleotide sequence