Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13530

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13525 and HMPREF1078_RS13530 are separated by 123 nucleotidesHMPREF1078_RS13530 and HMPREF1078_RS13535 are separated by 65 nucleotides HMPREF1078_RS13525: HMPREF1078_RS13525 - YitT family protein, at 150,693 to 151,592 _RS13525 HMPREF1078_RS13530: HMPREF1078_RS13530 - pyridoxal phosphate-dependent aminotransferase, at 151,716 to 152,915 _RS13530 HMPREF1078_RS13535: HMPREF1078_RS13535 - ABC transporter permease, at 152,981 to 154,225 _RS13535 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1 2at 150.719 kb on + strandat 150.722 kb on + strandat 150.743 kb on - strandat 150.760 kb on + strandat 150.788 kb on + strand, within HMPREF1078_RS13525at 150.788 kb on + strand, within HMPREF1078_RS13525at 150.788 kb on + strand, within HMPREF1078_RS13525at 150.788 kb on + strand, within HMPREF1078_RS13525at 150.789 kb on - strand, within HMPREF1078_RS13525at 150.793 kb on - strand, within HMPREF1078_RS13525at 150.813 kb on + strand, within HMPREF1078_RS13525at 150.814 kb on - strand, within HMPREF1078_RS13525at 150.837 kb on + strand, within HMPREF1078_RS13525at 150.837 kb on + strand, within HMPREF1078_RS13525at 150.837 kb on + strand, within HMPREF1078_RS13525at 150.837 kb on + strand, within HMPREF1078_RS13525at 150.837 kb on + strand, within HMPREF1078_RS13525at 150.838 kb on - strand, within HMPREF1078_RS13525at 150.838 kb on - strand, within HMPREF1078_RS13525at 150.842 kb on + strand, within HMPREF1078_RS13525at 150.842 kb on + strand, within HMPREF1078_RS13525at 150.842 kb on + strand, within HMPREF1078_RS13525at 150.842 kb on + strand, within HMPREF1078_RS13525at 150.842 kb on + strand, within HMPREF1078_RS13525at 150.842 kb on + strand, within HMPREF1078_RS13525at 150.930 kb on - strand, within HMPREF1078_RS13525at 151.036 kb on - strand, within HMPREF1078_RS13525at 151.057 kb on + strand, within HMPREF1078_RS13525at 151.057 kb on + strand, within HMPREF1078_RS13525at 151.058 kb on - strand, within HMPREF1078_RS13525at 151.184 kb on - strand, within HMPREF1078_RS13525at 151.209 kb on - strand, within HMPREF1078_RS13525at 151.209 kb on - strand, within HMPREF1078_RS13525at 151.209 kb on - strand, within HMPREF1078_RS13525at 151.209 kb on - strand, within HMPREF1078_RS13525at 151.222 kb on + strand, within HMPREF1078_RS13525at 151.249 kb on + strand, within HMPREF1078_RS13525at 151.256 kb on - strand, within HMPREF1078_RS13525at 151.281 kb on + strand, within HMPREF1078_RS13525at 151.295 kb on + strand, within HMPREF1078_RS13525at 151.384 kb on + strand, within HMPREF1078_RS13525at 151.400 kb on - strand, within HMPREF1078_RS13525at 151.421 kb on + strand, within HMPREF1078_RS13525at 151.446 kb on + strand, within HMPREF1078_RS13525at 151.446 kb on + strand, within HMPREF1078_RS13525at 151.447 kb on - strand, within HMPREF1078_RS13525at 151.553 kb on + strandat 151.553 kb on + strandat 151.554 kb on - strandat 151.565 kb on + strandat 151.590 kb on + strandat 151.677 kb on + strandat 151.711 kb on + strandat 151.714 kb on + strandat 151.721 kb on + strandat 151.724 kb on + strandat 151.766 kb on + strandat 151.815 kb on + strandat 151.847 kb on + strand, within HMPREF1078_RS13530at 151.950 kb on + strand, within HMPREF1078_RS13530at 151.950 kb on + strand, within HMPREF1078_RS13530at 151.962 kb on + strand, within HMPREF1078_RS13530at 151.962 kb on + strand, within HMPREF1078_RS13530at 151.962 kb on + strand, within HMPREF1078_RS13530at 151.967 kb on + strand, within HMPREF1078_RS13530at 151.967 kb on + strand, within HMPREF1078_RS13530at 151.969 kb on + strand, within HMPREF1078_RS13530at 151.969 kb on + strand, within HMPREF1078_RS13530at 151.988 kb on + strand, within HMPREF1078_RS13530at 151.991 kb on + strand, within HMPREF1078_RS13530at 151.991 kb on + strand, within HMPREF1078_RS13530at 151.991 kb on + strand, within HMPREF1078_RS13530at 151.991 kb on + strand, within HMPREF1078_RS13530at 151.991 kb on + strand, within HMPREF1078_RS13530at 152.020 kb on + strand, within HMPREF1078_RS13530at 152.091 kb on + strand, within HMPREF1078_RS13530at 152.091 kb on + strand, within HMPREF1078_RS13530at 152.091 kb on + strand, within HMPREF1078_RS13530at 152.093 kb on + strand, within HMPREF1078_RS13530at 152.093 kb on + strand, within HMPREF1078_RS13530at 152.093 kb on + strand, within HMPREF1078_RS13530at 152.225 kb on + strand, within HMPREF1078_RS13530at 152.234 kb on + strand, within HMPREF1078_RS13530at 152.247 kb on + strand, within HMPREF1078_RS13530at 152.251 kb on + strand, within HMPREF1078_RS13530at 152.298 kb on + strand, within HMPREF1078_RS13530at 152.328 kb on + strand, within HMPREF1078_RS13530at 152.358 kb on + strand, within HMPREF1078_RS13530at 152.358 kb on + strand, within HMPREF1078_RS13530at 152.360 kb on + strand, within HMPREF1078_RS13530at 152.360 kb on + strand, within HMPREF1078_RS13530at 152.574 kb on + strand, within HMPREF1078_RS13530at 152.574 kb on + strand, within HMPREF1078_RS13530at 152.589 kb on + strand, within HMPREF1078_RS13530at 152.589 kb on + strand, within HMPREF1078_RS13530at 152.598 kb on + strand, within HMPREF1078_RS13530at 152.598 kb on + strand, within HMPREF1078_RS13530at 152.612 kb on + strand, within HMPREF1078_RS13530at 152.650 kb on + strand, within HMPREF1078_RS13530at 152.792 kb on + strand, within HMPREF1078_RS13530at 152.832 kb on + strandat 152.832 kb on + strandat 152.832 kb on + strandat 152.911 kb on + strandat 152.913 kb on + strandat 152.922 kb on + strandat 152.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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150,719 + -1.5
150,722 + +1.2
150,743 - -0.8
150,760 + +1.4
150,788 + HMPREF1078_RS13525 0.11 +1.4
150,788 + HMPREF1078_RS13525 0.11 -1.2
150,788 + HMPREF1078_RS13525 0.11 -0.7
150,788 + HMPREF1078_RS13525 0.11 +0.1
150,789 - HMPREF1078_RS13525 0.11 -1.9
150,793 - HMPREF1078_RS13525 0.11 +0.1
150,813 + HMPREF1078_RS13525 0.13 -0.2
150,814 - HMPREF1078_RS13525 0.13 +1.3
150,837 + HMPREF1078_RS13525 0.16 +0.3
150,837 + HMPREF1078_RS13525 0.16 +0.9
150,837 + HMPREF1078_RS13525 0.16 -1.1
150,837 + HMPREF1078_RS13525 0.16 +1.1
150,837 + HMPREF1078_RS13525 0.16 +0.7
150,838 - HMPREF1078_RS13525 0.16 -0.2
150,838 - HMPREF1078_RS13525 0.16 +1.2
150,842 + HMPREF1078_RS13525 0.17 -2.0
150,842 + HMPREF1078_RS13525 0.17 -0.8
150,842 + HMPREF1078_RS13525 0.17 -1.2
150,842 + HMPREF1078_RS13525 0.17 -0.4
150,842 + HMPREF1078_RS13525 0.17 -0.9
150,842 + HMPREF1078_RS13525 0.17 -0.2
150,930 - HMPREF1078_RS13525 0.26 +0.1
151,036 - HMPREF1078_RS13525 0.38 +1.7
151,057 + HMPREF1078_RS13525 0.40 +0.1
151,057 + HMPREF1078_RS13525 0.40 -0.2
151,058 - HMPREF1078_RS13525 0.41 -0.8
151,184 - HMPREF1078_RS13525 0.55 -1.1
151,209 - HMPREF1078_RS13525 0.57 -1.3
151,209 - HMPREF1078_RS13525 0.57 +1.0
151,209 - HMPREF1078_RS13525 0.57 +0.1
151,209 - HMPREF1078_RS13525 0.57 +0.2
151,222 + HMPREF1078_RS13525 0.59 -1.5
151,249 + HMPREF1078_RS13525 0.62 +0.1
151,256 - HMPREF1078_RS13525 0.63 +0.6
151,281 + HMPREF1078_RS13525 0.65 +0.1
151,295 + HMPREF1078_RS13525 0.67 -2.6
151,384 + HMPREF1078_RS13525 0.77 +0.1
151,400 - HMPREF1078_RS13525 0.79 +0.2
151,421 + HMPREF1078_RS13525 0.81 +0.8
151,446 + HMPREF1078_RS13525 0.84 +0.5
151,446 + HMPREF1078_RS13525 0.84 +0.1
151,447 - HMPREF1078_RS13525 0.84 +1.0
151,553 + +0.2
151,553 + -1.3
151,554 - +0.4
151,565 + +0.8
151,590 + -0.1
151,677 + -0.4
151,711 + -1.0
151,714 + -0.1
151,721 + -1.6
151,724 + -2.5
151,766 + -0.6
151,815 + +1.7
151,847 + HMPREF1078_RS13530 0.11 +1.1
151,950 + HMPREF1078_RS13530 0.20 -1.2
151,950 + HMPREF1078_RS13530 0.20 +1.4
151,962 + HMPREF1078_RS13530 0.20 -0.8
151,962 + HMPREF1078_RS13530 0.20 -2.6
151,962 + HMPREF1078_RS13530 0.20 -2.1
151,967 + HMPREF1078_RS13530 0.21 +0.4
151,967 + HMPREF1078_RS13530 0.21 +0.4
151,969 + HMPREF1078_RS13530 0.21 -1.0
151,969 + HMPREF1078_RS13530 0.21 +0.1
151,988 + HMPREF1078_RS13530 0.23 +2.4
151,991 + HMPREF1078_RS13530 0.23 -0.6
151,991 + HMPREF1078_RS13530 0.23 +0.4
151,991 + HMPREF1078_RS13530 0.23 -0.8
151,991 + HMPREF1078_RS13530 0.23 +0.1
151,991 + HMPREF1078_RS13530 0.23 -0.8
152,020 + HMPREF1078_RS13530 0.25 -0.2
152,091 + HMPREF1078_RS13530 0.31 -1.4
152,091 + HMPREF1078_RS13530 0.31 -0.9
152,091 + HMPREF1078_RS13530 0.31 +1.2
152,093 + HMPREF1078_RS13530 0.31 -2.7
152,093 + HMPREF1078_RS13530 0.31 +2.0
152,093 + HMPREF1078_RS13530 0.31 +0.8
152,225 + HMPREF1078_RS13530 0.42 -2.1
152,234 + HMPREF1078_RS13530 0.43 -0.3
152,247 + HMPREF1078_RS13530 0.44 +0.8
152,251 + HMPREF1078_RS13530 0.45 +1.4
152,298 + HMPREF1078_RS13530 0.48 -1.0
152,328 + HMPREF1078_RS13530 0.51 -1.4
152,358 + HMPREF1078_RS13530 0.54 -1.1
152,358 + HMPREF1078_RS13530 0.54 -2.5
152,360 + HMPREF1078_RS13530 0.54 +0.8
152,360 + HMPREF1078_RS13530 0.54 +0.3
152,574 + HMPREF1078_RS13530 0.71 -2.3
152,574 + HMPREF1078_RS13530 0.71 -0.9
152,589 + HMPREF1078_RS13530 0.73 -0.9
152,589 + HMPREF1078_RS13530 0.73 -1.1
152,598 + HMPREF1078_RS13530 0.73 -0.2
152,598 + HMPREF1078_RS13530 0.73 -1.7
152,612 + HMPREF1078_RS13530 0.75 +2.4
152,650 + HMPREF1078_RS13530 0.78 -1.5
152,792 + HMPREF1078_RS13530 0.90 +2.4
152,832 + -2.7
152,832 + -1.9
152,832 + -1.1
152,911 + -0.3
152,913 + -1.1
152,922 + +0.6
152,948 + -0.4

Or see this region's nucleotide sequence