Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11210 and HMPREF1078_RS11215 are separated by 65 nucleotides HMPREF1078_RS11215 and HMPREF1078_RS11220 are separated by 90 nucleotides
HMPREF1078_RS11210: HMPREF1078_RS11210 - putative LPS assembly protein LptD, at 161,044 to 163,809
_RS11210
HMPREF1078_RS11215: HMPREF1078_RS11215 - HDIG domain-containing protein, at 163,875 to 164,417
_RS11215
HMPREF1078_RS11220: HMPREF1078_RS11220 - DUF1343 domain-containing protein, at 164,508 to 165,701
_RS11220
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 163.833 kb on - strand at 164.046 kb on - strand, within HMPREF1078_RS11215 at 164.096 kb on + strand, within HMPREF1078_RS11215 at 164.096 kb on + strand, within HMPREF1078_RS11215 at 164.099 kb on + strand, within HMPREF1078_RS11215 at 164.111 kb on + strand, within HMPREF1078_RS11215 at 164.176 kb on + strand, within HMPREF1078_RS11215 at 164.190 kb on - strand, within HMPREF1078_RS11215 at 164.192 kb on - strand, within HMPREF1078_RS11215 at 164.192 kb on - strand, within HMPREF1078_RS11215 at 164.258 kb on + strand, within HMPREF1078_RS11215 at 164.259 kb on - strand, within HMPREF1078_RS11215 at 164.259 kb on - strand, within HMPREF1078_RS11215 at 164.279 kb on + strand, within HMPREF1078_RS11215 at 164.280 kb on - strand, within HMPREF1078_RS11215 at 164.313 kb on + strand, within HMPREF1078_RS11215 at 164.315 kb on + strand, within HMPREF1078_RS11215 at 164.315 kb on + strand, within HMPREF1078_RS11215 at 164.316 kb on - strand, within HMPREF1078_RS11215 at 164.344 kb on - strand, within HMPREF1078_RS11215 at 164.345 kb on + strand, within HMPREF1078_RS11215 at 164.389 kb on + strand at 164.417 kb on + strand at 164.449 kb on + strand at 164.492 kb on - strand at 164.492 kb on - strand at 164.494 kb on + strand at 164.507 kb on + strand at 164.508 kb on - strand at 164.519 kb on + strand at 164.519 kb on + strand at 164.520 kb on - strand at 164.526 kb on + strand at 164.615 kb on + strand at 164.615 kb on + strand at 164.616 kb on - strand at 164.616 kb on - strand at 164.659 kb on + strand, within HMPREF1078_RS11220 at 164.730 kb on - strand, within HMPREF1078_RS11220 at 164.738 kb on - strand, within HMPREF1078_RS11220 at 164.842 kb on + strand, within HMPREF1078_RS11220 at 164.932 kb on - strand, within HMPREF1078_RS11220 at 164.933 kb on + strand, within HMPREF1078_RS11220 at 164.933 kb on + strand, within HMPREF1078_RS11220 at 164.955 kb on + strand, within HMPREF1078_RS11220 at 164.956 kb on - strand, within HMPREF1078_RS11220 at 164.956 kb on - strand, within HMPREF1078_RS11220 at 165.089 kb on - strand, within HMPREF1078_RS11220 at 165.179 kb on - strand, within HMPREF1078_RS11220 at 165.303 kb on - strand, within HMPREF1078_RS11220 at 165.325 kb on - strand, within HMPREF1078_RS11220
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 163,833 - +1.3 164,046 - HMPREF1078_RS11215 0.31 -2.7 164,096 + HMPREF1078_RS11215 0.41 -2.9 164,096 + HMPREF1078_RS11215 0.41 -3.0 164,099 + HMPREF1078_RS11215 0.41 -2.1 164,111 + HMPREF1078_RS11215 0.43 +1.7 164,176 + HMPREF1078_RS11215 0.55 -0.9 164,190 - HMPREF1078_RS11215 0.58 -0.9 164,192 - HMPREF1078_RS11215 0.58 -1.6 164,192 - HMPREF1078_RS11215 0.58 -1.4 164,258 + HMPREF1078_RS11215 0.71 -1.5 164,259 - HMPREF1078_RS11215 0.71 -3.2 164,259 - HMPREF1078_RS11215 0.71 +2.3 164,279 + HMPREF1078_RS11215 0.74 +0.4 164,280 - HMPREF1078_RS11215 0.75 +1.3 164,313 + HMPREF1078_RS11215 0.81 -3.1 164,315 + HMPREF1078_RS11215 0.81 -3.3 164,315 + HMPREF1078_RS11215 0.81 +2.3 164,316 - HMPREF1078_RS11215 0.81 +0.3 164,344 - HMPREF1078_RS11215 0.86 -0.3 164,345 + HMPREF1078_RS11215 0.87 -1.2 164,389 + -1.6 164,417 + -0.0 164,449 + -2.6 164,492 - +2.2 164,492 - +0.2 164,494 + -0.5 164,507 + -1.0 164,508 - +1.3 164,519 + -0.7 164,519 + +0.7 164,520 - -1.3 164,526 + -0.1 164,615 + +2.0 164,615 + -0.2 164,616 - -0.9 164,616 - -0.0 164,659 + HMPREF1078_RS11220 0.13 -1.2 164,730 - HMPREF1078_RS11220 0.19 -0.0 164,738 - HMPREF1078_RS11220 0.19 -1.2 164,842 + HMPREF1078_RS11220 0.28 -0.0 164,932 - HMPREF1078_RS11220 0.36 -0.6 164,933 + HMPREF1078_RS11220 0.36 +0.2 164,933 + HMPREF1078_RS11220 0.36 -0.4 164,955 + HMPREF1078_RS11220 0.37 +1.0 164,956 - HMPREF1078_RS11220 0.38 +4.9 164,956 - HMPREF1078_RS11220 0.38 -2.7 165,089 - HMPREF1078_RS11220 0.49 +0.6 165,179 - HMPREF1078_RS11220 0.56 +0.1 165,303 - HMPREF1078_RS11220 0.67 -0.2 165,325 - HMPREF1078_RS11220 0.68 -1.5
Or see this region's nucleotide sequence