Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11190 and HMPREF1078_RS11195 are separated by 111 nucleotides HMPREF1078_RS11195 and HMPREF1078_RS11200 are separated by 197 nucleotides HMPREF1078_RS11200 and HMPREF1078_RS11205 are separated by 115 nucleotides HMPREF1078_RS11205 and HMPREF1078_RS11210 are separated by 20 nucleotides
HMPREF1078_RS11190: HMPREF1078_RS11190 - DoxX family protein, at 158,385 to 158,825
_RS11190
HMPREF1078_RS11195: HMPREF1078_RS11195 - tRNA-Arg, at 158,937 to 159,010
_RS11195
HMPREF1078_RS11200: HMPREF1078_RS11200 - aspartate--ammonia ligase, at 159,208 to 160,245
_RS11200
HMPREF1078_RS11205: HMPREF1078_RS11205 - uracil-DNA glycosylase, at 160,361 to 161,023
_RS11205
HMPREF1078_RS11210: HMPREF1078_RS11210 - putative LPS assembly protein LptD, at 161,044 to 163,809
_RS11210
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 158.227 kb on + strand at 158.227 kb on + strand at 158.228 kb on - strand at 158.228 kb on - strand at 158.228 kb on - strand at 158.273 kb on + strand at 158.273 kb on + strand at 158.273 kb on + strand at 158.274 kb on - strand at 158.274 kb on - strand at 158.284 kb on + strand at 158.329 kb on - strand at 158.329 kb on - strand at 158.356 kb on - strand at 158.356 kb on - strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand at 158.358 kb on - strand at 158.358 kb on - strand at 158.363 kb on + strand at 158.363 kb on + strand at 158.364 kb on - strand at 158.376 kb on + strand at 158.377 kb on - strand at 158.378 kb on + strand at 158.379 kb on - strand at 158.379 kb on - strand at 158.399 kb on + strand at 158.399 kb on + strand at 158.400 kb on - strand at 158.401 kb on + strand at 158.403 kb on + strand at 158.404 kb on - strand at 158.415 kb on + strand at 158.415 kb on + strand at 158.416 kb on - strand at 158.424 kb on + strand at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.455 kb on + strand, within HMPREF1078_RS11190 at 158.456 kb on - strand, within HMPREF1078_RS11190 at 158.469 kb on + strand, within HMPREF1078_RS11190 at 158.469 kb on + strand, within HMPREF1078_RS11190 at 158.470 kb on - strand, within HMPREF1078_RS11190 at 158.470 kb on - strand, within HMPREF1078_RS11190 at 158.483 kb on + strand, within HMPREF1078_RS11190 at 158.483 kb on + strand, within HMPREF1078_RS11190 at 158.484 kb on - strand, within HMPREF1078_RS11190 at 158.484 kb on - strand, within HMPREF1078_RS11190 at 158.523 kb on + strand, within HMPREF1078_RS11190 at 158.524 kb on - strand, within HMPREF1078_RS11190 at 158.592 kb on + strand, within HMPREF1078_RS11190 at 158.593 kb on - strand, within HMPREF1078_RS11190 at 158.594 kb on + strand, within HMPREF1078_RS11190 at 158.613 kb on + strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.614 kb on - strand, within HMPREF1078_RS11190 at 158.649 kb on - strand, within HMPREF1078_RS11190 at 158.656 kb on - strand, within HMPREF1078_RS11190 at 158.656 kb on - strand, within HMPREF1078_RS11190 at 158.656 kb on - strand, within HMPREF1078_RS11190 at 158.693 kb on + strand, within HMPREF1078_RS11190 at 158.733 kb on + strand, within HMPREF1078_RS11190 at 158.825 kb on + strand at 158.825 kb on + strand at 158.826 kb on - strand at 158.847 kb on + strand at 158.859 kb on + strand at 158.872 kb on + strand at 159.163 kb on + strand at 159.192 kb on - strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.205 kb on + strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.206 kb on - strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.207 kb on + strand at 159.215 kb on - strand at 159.215 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.223 kb on - strand at 159.235 kb on + strand at 159.235 kb on + strand at 159.236 kb on - strand at 159.236 kb on - strand at 159.237 kb on + strand at 159.237 kb on + strand at 159.237 kb on + strand at 159.237 kb on + strand at 159.238 kb on - strand at 159.238 kb on - strand at 159.238 kb on - strand at 159.238 kb on - strand at 159.245 kb on + strand at 159.254 kb on + strand at 159.254 kb on + strand at 159.321 kb on - strand, within HMPREF1078_RS11200 at 159.369 kb on + strand, within HMPREF1078_RS11200 at 159.477 kb on + strand, within HMPREF1078_RS11200 at 159.514 kb on - strand, within HMPREF1078_RS11200 at 159.517 kb on + strand, within HMPREF1078_RS11200 at 159.517 kb on + strand, within HMPREF1078_RS11200 at 159.534 kb on + strand, within HMPREF1078_RS11200 at 159.563 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.572 kb on + strand, within HMPREF1078_RS11200 at 159.573 kb on - strand, within HMPREF1078_RS11200 at 159.573 kb on - strand, within HMPREF1078_RS11200 at 159.574 kb on + strand, within HMPREF1078_RS11200 at 159.574 kb on + strand, within HMPREF1078_RS11200 at 159.574 kb on + strand, within HMPREF1078_RS11200 at 159.575 kb on - strand, within HMPREF1078_RS11200 at 159.648 kb on - strand, within HMPREF1078_RS11200 at 159.671 kb on + strand, within HMPREF1078_RS11200 at 159.671 kb on + strand, within HMPREF1078_RS11200 at 159.672 kb on - strand, within HMPREF1078_RS11200 at 159.672 kb on - strand, within HMPREF1078_RS11200 at 159.672 kb on - strand, within HMPREF1078_RS11200 at 159.676 kb on - strand, within HMPREF1078_RS11200 at 159.692 kb on - strand, within HMPREF1078_RS11200 at 159.717 kb on + strand, within HMPREF1078_RS11200 at 159.718 kb on - strand, within HMPREF1078_RS11200 at 159.817 kb on + strand, within HMPREF1078_RS11200 at 159.849 kb on + strand, within HMPREF1078_RS11200 at 159.849 kb on + strand, within HMPREF1078_RS11200 at 159.850 kb on - strand, within HMPREF1078_RS11200 at 159.854 kb on + strand, within HMPREF1078_RS11200 at 159.893 kb on - strand, within HMPREF1078_RS11200 at 159.999 kb on + strand, within HMPREF1078_RS11200 at 160.000 kb on - strand, within HMPREF1078_RS11200 at 160.068 kb on - strand, within HMPREF1078_RS11200 at 160.068 kb on - strand, within HMPREF1078_RS11200 at 160.106 kb on + strand, within HMPREF1078_RS11200 at 160.111 kb on - strand, within HMPREF1078_RS11200 at 160.143 kb on + strand at 160.143 kb on + strand at 160.143 kb on + strand at 160.143 kb on + strand at 160.143 kb on + strand at 160.188 kb on + strand at 160.188 kb on + strand at 160.189 kb on - strand at 160.189 kb on - strand at 160.190 kb on + strand at 160.190 kb on + strand at 160.231 kb on - strand at 160.234 kb on + strand at 160.234 kb on + strand at 160.235 kb on - strand at 160.244 kb on - strand at 160.244 kb on - strand at 160.244 kb on - strand at 160.284 kb on - strand at 160.287 kb on - strand at 160.293 kb on - strand at 160.297 kb on - strand at 160.354 kb on + strand at 160.361 kb on - strand at 160.492 kb on + strand, within HMPREF1078_RS11205 at 160.492 kb on + strand, within HMPREF1078_RS11205 at 160.493 kb on - strand, within HMPREF1078_RS11205 at 160.493 kb on - strand, within HMPREF1078_RS11205 at 160.493 kb on - strand, within HMPREF1078_RS11205 at 160.662 kb on + strand, within HMPREF1078_RS11205 at 160.663 kb on - strand, within HMPREF1078_RS11205 at 160.774 kb on + strand, within HMPREF1078_RS11205 at 160.835 kb on - strand, within HMPREF1078_RS11205 at 160.841 kb on + strand, within HMPREF1078_RS11205 at 160.842 kb on - strand, within HMPREF1078_RS11205 at 160.842 kb on - strand, within HMPREF1078_RS11205 at 160.905 kb on + strand, within HMPREF1078_RS11205 at 160.986 kb on - strand at 161.013 kb on + strand at 161.021 kb on + strand at 161.022 kb on - strand at 161.026 kb on - strand at 161.026 kb on - strand at 161.026 kb on - strand at 161.026 kb on - strand at 161.046 kb on - strand at 161.069 kb on + strand at 161.069 kb on + strand at 161.070 kb on - strand at 161.070 kb on - strand at 161.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 158,227 + -0.0 158,227 + -2.6 158,228 - +0.3 158,228 - +2.3 158,228 - -0.5 158,273 + +0.3 158,273 + -1.5 158,273 + -2.3 158,274 - -2.3 158,274 - +0.1 158,284 + +0.6 158,329 - -0.9 158,329 - +2.6 158,356 - -0.3 158,356 - -1.6 158,357 + -0.1 158,357 + +1.5 158,357 + -0.3 158,357 + -1.8 158,358 - -2.2 158,358 - -0.9 158,363 + +1.2 158,363 + -0.2 158,364 - +0.6 158,376 + +1.1 158,377 - -0.2 158,378 + +2.7 158,379 - +1.4 158,379 - -1.2 158,399 + +0.7 158,399 + +2.3 158,400 - -0.5 158,401 + -0.9 158,403 + +0.7 158,404 - +2.3 158,415 + -1.2 158,415 + -2.1 158,416 - +0.3 158,424 + -0.3 158,455 + HMPREF1078_RS11190 0.16 -1.2 158,455 + HMPREF1078_RS11190 0.16 +0.0 158,455 + HMPREF1078_RS11190 0.16 -0.0 158,455 + HMPREF1078_RS11190 0.16 +1.3 158,455 + HMPREF1078_RS11190 0.16 +0.4 158,456 - HMPREF1078_RS11190 0.16 -0.3 158,469 + HMPREF1078_RS11190 0.19 -0.6 158,469 + HMPREF1078_RS11190 0.19 +3.3 158,470 - HMPREF1078_RS11190 0.19 +1.9 158,470 - HMPREF1078_RS11190 0.19 +0.2 158,483 + HMPREF1078_RS11190 0.22 +1.6 158,483 + HMPREF1078_RS11190 0.22 -1.0 158,484 - HMPREF1078_RS11190 0.22 -1.4 158,484 - HMPREF1078_RS11190 0.22 -2.4 158,523 + HMPREF1078_RS11190 0.31 -1.0 158,524 - HMPREF1078_RS11190 0.32 -2.2 158,592 + HMPREF1078_RS11190 0.47 -0.9 158,593 - HMPREF1078_RS11190 0.47 +0.0 158,594 + HMPREF1078_RS11190 0.47 -0.6 158,613 + HMPREF1078_RS11190 0.52 +0.3 158,614 - HMPREF1078_RS11190 0.52 -0.5 158,614 - HMPREF1078_RS11190 0.52 +1.3 158,614 - HMPREF1078_RS11190 0.52 -1.0 158,649 - HMPREF1078_RS11190 0.60 -0.6 158,656 - HMPREF1078_RS11190 0.61 -0.5 158,656 - HMPREF1078_RS11190 0.61 -0.9 158,656 - HMPREF1078_RS11190 0.61 -1.2 158,693 + HMPREF1078_RS11190 0.70 +0.4 158,733 + HMPREF1078_RS11190 0.79 -3.3 158,825 + -1.2 158,825 + +1.5 158,826 - +1.3 158,847 + +0.7 158,859 + -0.0 158,872 + -0.6 159,163 + +0.8 159,192 - +0.8 159,205 + +1.7 159,205 + +0.4 159,205 + +2.3 159,205 + -1.0 159,205 + -0.3 159,205 + +1.4 159,205 + -1.2 159,205 + +0.1 159,205 + -0.7 159,205 + -1.3 159,205 + -1.4 159,206 - -2.0 159,206 - -0.7 159,206 - +1.0 159,206 - -0.9 159,206 - -0.0 159,207 + -1.7 159,207 + +1.1 159,207 + -1.3 159,207 + +0.7 159,215 - -0.7 159,215 - -0.7 159,223 - +0.5 159,223 - -1.0 159,223 - +2.3 159,235 + -0.9 159,235 + -1.6 159,236 - +1.6 159,236 - -1.3 159,237 + -0.3 159,237 + -1.2 159,237 + -0.3 159,237 + -1.0 159,238 - -1.9 159,238 - +1.3 159,238 - +4.3 159,238 - -0.3 159,245 + +0.3 159,254 + -1.9 159,254 + -1.7 159,321 - HMPREF1078_RS11200 0.11 -0.5 159,369 + HMPREF1078_RS11200 0.16 -2.7 159,477 + HMPREF1078_RS11200 0.26 +0.5 159,514 - HMPREF1078_RS11200 0.29 +0.3 159,517 + HMPREF1078_RS11200 0.30 -2.0 159,517 + HMPREF1078_RS11200 0.30 -1.3 159,534 + HMPREF1078_RS11200 0.31 -1.0 159,563 + HMPREF1078_RS11200 0.34 -2.4 159,572 + HMPREF1078_RS11200 0.35 -0.7 159,572 + HMPREF1078_RS11200 0.35 +2.3 159,572 + HMPREF1078_RS11200 0.35 -1.1 159,572 + HMPREF1078_RS11200 0.35 -0.2 159,572 + HMPREF1078_RS11200 0.35 +0.1 159,572 + HMPREF1078_RS11200 0.35 -0.3 159,573 - HMPREF1078_RS11200 0.35 +1.3 159,573 - HMPREF1078_RS11200 0.35 +0.7 159,574 + HMPREF1078_RS11200 0.35 -0.8 159,574 + HMPREF1078_RS11200 0.35 -1.4 159,574 + HMPREF1078_RS11200 0.35 +0.7 159,575 - HMPREF1078_RS11200 0.35 -0.2 159,648 - HMPREF1078_RS11200 0.42 -1.2 159,671 + HMPREF1078_RS11200 0.45 -1.4 159,671 + HMPREF1078_RS11200 0.45 +0.9 159,672 - HMPREF1078_RS11200 0.45 +0.5 159,672 - HMPREF1078_RS11200 0.45 -1.8 159,672 - HMPREF1078_RS11200 0.45 +0.7 159,676 - HMPREF1078_RS11200 0.45 -0.2 159,692 - HMPREF1078_RS11200 0.47 -1.3 159,717 + HMPREF1078_RS11200 0.49 -0.3 159,718 - HMPREF1078_RS11200 0.49 +1.8 159,817 + HMPREF1078_RS11200 0.59 -0.2 159,849 + HMPREF1078_RS11200 0.62 -0.5 159,849 + HMPREF1078_RS11200 0.62 -1.0 159,850 - HMPREF1078_RS11200 0.62 -1.3 159,854 + HMPREF1078_RS11200 0.62 +1.3 159,893 - HMPREF1078_RS11200 0.66 -0.4 159,999 + HMPREF1078_RS11200 0.76 -0.9 160,000 - HMPREF1078_RS11200 0.76 +0.7 160,068 - HMPREF1078_RS11200 0.83 +1.3 160,068 - HMPREF1078_RS11200 0.83 -1.2 160,106 + HMPREF1078_RS11200 0.87 +0.3 160,111 - HMPREF1078_RS11200 0.87 -0.3 160,143 + -1.8 160,143 + +0.7 160,143 + +3.2 160,143 + +0.2 160,143 + -1.6 160,188 + +0.3 160,188 + -1.2 160,189 - -0.0 160,189 - -0.5 160,190 + +1.7 160,190 + -0.0 160,231 - -0.7 160,234 + -2.0 160,234 + +1.3 160,235 - +2.3 160,244 - -1.9 160,244 - +0.3 160,244 - -2.0 160,284 - +0.6 160,287 - -1.6 160,293 - -0.4 160,297 - -0.9 160,354 + +3.9 160,361 - -0.0 160,492 + HMPREF1078_RS11205 0.20 -1.3 160,492 + HMPREF1078_RS11205 0.20 +3.0 160,493 - HMPREF1078_RS11205 0.20 -0.6 160,493 - HMPREF1078_RS11205 0.20 +0.7 160,493 - HMPREF1078_RS11205 0.20 -1.9 160,662 + HMPREF1078_RS11205 0.45 -0.6 160,663 - HMPREF1078_RS11205 0.46 +0.5 160,774 + HMPREF1078_RS11205 0.62 +0.3 160,835 - HMPREF1078_RS11205 0.71 -0.0 160,841 + HMPREF1078_RS11205 0.72 -0.9 160,842 - HMPREF1078_RS11205 0.73 -0.8 160,842 - HMPREF1078_RS11205 0.73 +2.3 160,905 + HMPREF1078_RS11205 0.82 +0.3 160,986 - -1.3 161,013 + -0.9 161,021 + -1.7 161,022 - -2.7 161,026 - -1.1 161,026 - -1.8 161,026 - -1.2 161,026 - +0.2 161,046 - -0.4 161,069 + -2.4 161,069 + -0.7 161,070 - +1.3 161,070 - -1.0 161,070 - -0.5
Or see this region's nucleotide sequence