Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11065 and HMPREF1078_RS11070 are separated by 142 nucleotides HMPREF1078_RS11070 and HMPREF1078_RS11075 are separated by 25 nucleotides
HMPREF1078_RS11065: HMPREF1078_RS11065 - alpha-2-macroglobulin family protein, at 131,463 to 137,147
_RS11065
HMPREF1078_RS11070: HMPREF1078_RS11070 - DUF1573 domain-containing protein, at 137,290 to 137,667
_RS11070
HMPREF1078_RS11075: HMPREF1078_RS11075 - DUF1573 domain-containing protein, at 137,693 to 138,808
_RS11075
Position (kb) 137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.414 kb on + strand, within HMPREF1078_RS11065 at 136.415 kb on - strand, within HMPREF1078_RS11065 at 136.469 kb on + strand, within HMPREF1078_RS11065 at 136.469 kb on + strand, within HMPREF1078_RS11065 at 136.473 kb on + strand, within HMPREF1078_RS11065 at 136.473 kb on + strand, within HMPREF1078_RS11065 at 136.473 kb on + strand, within HMPREF1078_RS11065 at 136.689 kb on + strand at 136.689 kb on + strand at 136.690 kb on - strand at 136.739 kb on - strand at 136.756 kb on + strand at 136.873 kb on - strand at 136.873 kb on - strand at 136.935 kb on - strand at 136.939 kb on - strand at 136.957 kb on - strand at 137.032 kb on - strand at 137.032 kb on - strand at 137.040 kb on + strand at 137.040 kb on + strand at 137.040 kb on + strand at 137.040 kb on + strand at 137.041 kb on - strand at 137.041 kb on - strand at 137.041 kb on - strand at 137.041 kb on - strand at 137.041 kb on - strand at 137.041 kb on - strand at 137.079 kb on - strand at 137.095 kb on - strand at 137.140 kb on + strand at 137.339 kb on + strand, within HMPREF1078_RS11070 at 137.363 kb on + strand, within HMPREF1078_RS11070 at 137.363 kb on + strand, within HMPREF1078_RS11070 at 137.499 kb on + strand, within HMPREF1078_RS11070 at 137.528 kb on + strand, within HMPREF1078_RS11070 at 137.563 kb on + strand, within HMPREF1078_RS11070 at 137.601 kb on + strand, within HMPREF1078_RS11070 at 137.601 kb on + strand, within HMPREF1078_RS11070 at 137.601 kb on + strand, within HMPREF1078_RS11070 at 137.601 kb on + strand, within HMPREF1078_RS11070 at 137.611 kb on + strand, within HMPREF1078_RS11070 at 137.611 kb on + strand, within HMPREF1078_RS11070 at 137.611 kb on + strand, within HMPREF1078_RS11070 at 137.611 kb on + strand, within HMPREF1078_RS11070 at 137.616 kb on + strand, within HMPREF1078_RS11070 at 137.665 kb on + strand at 137.665 kb on + strand at 137.719 kb on + strand at 137.731 kb on + strand at 137.733 kb on + strand at 137.733 kb on + strand at 137.752 kb on + strand at 137.752 kb on + strand at 137.800 kb on + strand at 137.844 kb on + strand, within HMPREF1078_RS11075 at 137.848 kb on + strand, within HMPREF1078_RS11075 at 137.849 kb on - strand, within HMPREF1078_RS11075 at 137.866 kb on + strand, within HMPREF1078_RS11075 at 137.866 kb on + strand, within HMPREF1078_RS11075 at 137.866 kb on + strand, within HMPREF1078_RS11075 at 137.866 kb on + strand, within HMPREF1078_RS11075 at 137.911 kb on + strand, within HMPREF1078_RS11075 at 137.912 kb on - strand, within HMPREF1078_RS11075 at 138.005 kb on + strand, within HMPREF1078_RS11075 at 138.013 kb on + strand, within HMPREF1078_RS11075 at 138.013 kb on + strand, within HMPREF1078_RS11075 at 138.013 kb on + strand, within HMPREF1078_RS11075 at 138.013 kb on + strand, within HMPREF1078_RS11075 at 138.054 kb on + strand, within HMPREF1078_RS11075 at 138.058 kb on + strand, within HMPREF1078_RS11075 at 138.104 kb on + strand, within HMPREF1078_RS11075 at 138.110 kb on + strand, within HMPREF1078_RS11075 at 138.112 kb on + strand, within HMPREF1078_RS11075 at 138.152 kb on + strand, within HMPREF1078_RS11075 at 138.154 kb on + strand, within HMPREF1078_RS11075 at 138.154 kb on + strand, within HMPREF1078_RS11075 at 138.251 kb on + strand, within HMPREF1078_RS11075 at 138.306 kb on + strand, within HMPREF1078_RS11075 at 138.382 kb on + strand, within HMPREF1078_RS11075 at 138.414 kb on + strand, within HMPREF1078_RS11075 at 138.415 kb on - strand, within HMPREF1078_RS11075 at 138.430 kb on + strand, within HMPREF1078_RS11075 at 138.642 kb on + strand, within HMPREF1078_RS11075
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 136,414 + HMPREF1078_RS11065 0.87 -1.6 136,415 - HMPREF1078_RS11065 0.87 -1.6 136,469 + HMPREF1078_RS11065 0.88 +1.1 136,469 + HMPREF1078_RS11065 0.88 -2.7 136,473 + HMPREF1078_RS11065 0.88 -2.6 136,473 + HMPREF1078_RS11065 0.88 -0.8 136,473 + HMPREF1078_RS11065 0.88 +2.3 136,689 + -0.9 136,689 + +1.5 136,690 - -0.6 136,739 - -0.8 136,756 + -3.1 136,873 - +2.3 136,873 - -1.4 136,935 - -1.2 136,939 - -2.2 136,957 - -2.2 137,032 - -1.1 137,032 - -0.1 137,040 + -0.3 137,040 + +0.7 137,040 + -0.0 137,040 + -2.1 137,041 - -2.6 137,041 - -1.4 137,041 - +0.3 137,041 - -2.2 137,041 - -1.3 137,041 - -0.3 137,079 - -1.3 137,095 - +2.0 137,140 + +1.3 137,339 + HMPREF1078_RS11070 0.13 -0.0 137,363 + HMPREF1078_RS11070 0.19 -0.3 137,363 + HMPREF1078_RS11070 0.19 -1.4 137,499 + HMPREF1078_RS11070 0.55 -2.1 137,528 + HMPREF1078_RS11070 0.63 -1.4 137,563 + HMPREF1078_RS11070 0.72 +1.3 137,601 + HMPREF1078_RS11070 0.82 -0.3 137,601 + HMPREF1078_RS11070 0.82 -0.3 137,601 + HMPREF1078_RS11070 0.82 -0.9 137,601 + HMPREF1078_RS11070 0.82 -1.5 137,611 + HMPREF1078_RS11070 0.85 -1.5 137,611 + HMPREF1078_RS11070 0.85 +0.3 137,611 + HMPREF1078_RS11070 0.85 -0.3 137,611 + HMPREF1078_RS11070 0.85 -0.5 137,616 + HMPREF1078_RS11070 0.86 -1.0 137,665 + -1.5 137,665 + -2.1 137,719 + +0.3 137,731 + -1.5 137,733 + +0.3 137,733 + +0.7 137,752 + +0.3 137,752 + +0.3 137,800 + -2.2 137,844 + HMPREF1078_RS11075 0.14 -0.2 137,848 + HMPREF1078_RS11075 0.14 -0.8 137,849 - HMPREF1078_RS11075 0.14 +0.3 137,866 + HMPREF1078_RS11075 0.16 -0.3 137,866 + HMPREF1078_RS11075 0.16 -0.8 137,866 + HMPREF1078_RS11075 0.16 -0.0 137,866 + HMPREF1078_RS11075 0.16 -0.9 137,911 + HMPREF1078_RS11075 0.20 -1.5 137,912 - HMPREF1078_RS11075 0.20 +0.7 138,005 + HMPREF1078_RS11075 0.28 -0.7 138,013 + HMPREF1078_RS11075 0.29 +2.3 138,013 + HMPREF1078_RS11075 0.29 +2.3 138,013 + HMPREF1078_RS11075 0.29 +0.3 138,013 + HMPREF1078_RS11075 0.29 -0.4 138,054 + HMPREF1078_RS11075 0.32 -1.0 138,058 + HMPREF1078_RS11075 0.33 +1.3 138,104 + HMPREF1078_RS11075 0.37 -0.6 138,110 + HMPREF1078_RS11075 0.37 -1.9 138,112 + HMPREF1078_RS11075 0.38 +1.7 138,152 + HMPREF1078_RS11075 0.41 -1.4 138,154 + HMPREF1078_RS11075 0.41 -1.3 138,154 + HMPREF1078_RS11075 0.41 -0.3 138,251 + HMPREF1078_RS11075 0.50 -0.3 138,306 + HMPREF1078_RS11075 0.55 -2.0 138,382 + HMPREF1078_RS11075 0.62 -1.0 138,414 + HMPREF1078_RS11075 0.65 -0.5 138,415 - HMPREF1078_RS11075 0.65 +0.7 138,430 + HMPREF1078_RS11075 0.66 -1.2 138,642 + HMPREF1078_RS11075 0.85 -0.4
Or see this region's nucleotide sequence