Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10015 and HMPREF1078_RS10020 are separated by 21 nucleotides HMPREF1078_RS10020 and HMPREF1078_RS10025 are separated by 22 nucleotides HMPREF1078_RS10025 and HMPREF1078_RS10030 are separated by 4 nucleotides
HMPREF1078_RS10015: HMPREF1078_RS10015 - acyl-CoA carboxylase subunit beta, at 625,009 to 626,562
_RS10015
HMPREF1078_RS10020: HMPREF1078_RS10020 - OadG family transporter subunit, at 626,584 to 627,471
_RS10020
HMPREF1078_RS10025: HMPREF1078_RS10025 - biotin/lipoyl-binding protein, at 627,494 to 627,925
_RS10025
HMPREF1078_RS10030: HMPREF1078_RS10030 - sodium ion-translocating decarboxylase subunit beta, at 627,930 to 629,126
_RS10030
Position (kb) 627
628 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 626.498 kb on + strand at 626.499 kb on - strand at 626.499 kb on - strand at 626.558 kb on + strand at 626.560 kb on + strand at 626.560 kb on + strand at 626.583 kb on + strand at 626.584 kb on - strand at 626.589 kb on + strand at 626.589 kb on + strand at 626.607 kb on - strand at 626.672 kb on + strand at 626.673 kb on - strand, within HMPREF1078_RS10020 at 626.700 kb on + strand, within HMPREF1078_RS10020 at 626.849 kb on + strand, within HMPREF1078_RS10020 at 626.849 kb on + strand, within HMPREF1078_RS10020 at 626.947 kb on + strand, within HMPREF1078_RS10020 at 626.948 kb on - strand, within HMPREF1078_RS10020 at 626.957 kb on + strand, within HMPREF1078_RS10020 at 626.958 kb on - strand, within HMPREF1078_RS10020 at 626.959 kb on + strand, within HMPREF1078_RS10020 at 626.960 kb on - strand, within HMPREF1078_RS10020 at 627.033 kb on + strand, within HMPREF1078_RS10020 at 627.033 kb on + strand, within HMPREF1078_RS10020 at 627.034 kb on - strand, within HMPREF1078_RS10020 at 627.034 kb on - strand, within HMPREF1078_RS10020 at 627.079 kb on - strand, within HMPREF1078_RS10020 at 627.079 kb on - strand, within HMPREF1078_RS10020 at 627.098 kb on + strand, within HMPREF1078_RS10020 at 627.099 kb on - strand, within HMPREF1078_RS10020 at 627.159 kb on + strand, within HMPREF1078_RS10020 at 627.197 kb on + strand, within HMPREF1078_RS10020 at 627.198 kb on - strand, within HMPREF1078_RS10020 at 627.198 kb on - strand, within HMPREF1078_RS10020 at 627.347 kb on + strand, within HMPREF1078_RS10020 at 627.384 kb on + strand at 627.384 kb on + strand at 627.384 kb on + strand at 627.385 kb on - strand at 627.385 kb on - strand at 627.385 kb on - strand at 627.473 kb on + strand at 627.474 kb on - strand at 627.474 kb on - strand at 627.509 kb on + strand at 627.509 kb on + strand at 627.509 kb on + strand at 627.509 kb on + strand at 627.510 kb on - strand at 627.510 kb on - strand at 627.510 kb on - strand at 627.510 kb on - strand at 627.510 kb on - strand at 627.511 kb on + strand at 627.514 kb on + strand at 627.514 kb on + strand at 627.514 kb on + strand at 627.515 kb on - strand at 627.528 kb on + strand at 627.529 kb on - strand at 627.530 kb on + strand at 627.530 kb on + strand at 627.531 kb on - strand at 627.532 kb on + strand at 627.532 kb on + strand at 627.532 kb on + strand at 627.532 kb on + strand at 627.532 kb on + strand at 627.538 kb on - strand, within HMPREF1078_RS10025 at 627.542 kb on - strand, within HMPREF1078_RS10025 at 627.542 kb on - strand, within HMPREF1078_RS10025 at 627.542 kb on - strand, within HMPREF1078_RS10025 at 627.542 kb on - strand, within HMPREF1078_RS10025 at 627.542 kb on - strand, within HMPREF1078_RS10025 at 627.573 kb on + strand, within HMPREF1078_RS10025 at 627.573 kb on + strand, within HMPREF1078_RS10025 at 627.573 kb on + strand, within HMPREF1078_RS10025 at 627.573 kb on + strand, within HMPREF1078_RS10025 at 627.574 kb on - strand, within HMPREF1078_RS10025 at 627.634 kb on + strand, within HMPREF1078_RS10025 at 627.635 kb on - strand, within HMPREF1078_RS10025 at 627.662 kb on - strand, within HMPREF1078_RS10025 at 627.744 kb on + strand, within HMPREF1078_RS10025 at 627.745 kb on - strand, within HMPREF1078_RS10025 at 627.757 kb on + strand, within HMPREF1078_RS10025 at 627.763 kb on + strand, within HMPREF1078_RS10025 at 627.764 kb on - strand, within HMPREF1078_RS10025 at 627.764 kb on - strand, within HMPREF1078_RS10025 at 627.776 kb on - strand, within HMPREF1078_RS10025 at 627.799 kb on - strand, within HMPREF1078_RS10025 at 627.799 kb on - strand, within HMPREF1078_RS10025 at 627.859 kb on - strand, within HMPREF1078_RS10025 at 627.918 kb on + strand at 627.919 kb on - strand at 627.923 kb on + strand at 627.924 kb on - strand at 627.926 kb on + strand at 627.926 kb on + strand at 627.926 kb on + strand at 627.926 kb on + strand at 627.927 kb on - strand at 627.927 kb on - strand at 627.927 kb on - strand at 627.929 kb on + strand at 627.929 kb on + strand at 627.929 kb on + strand at 627.934 kb on + strand at 627.934 kb on + strand at 627.934 kb on + strand at 627.934 kb on + strand at 627.935 kb on - strand at 627.935 kb on - strand at 627.935 kb on - strand at 627.935 kb on - strand at 627.946 kb on + strand at 627.946 kb on + strand at 627.947 kb on - strand at 627.949 kb on + strand at 628.021 kb on - strand at 628.021 kb on - strand at 628.022 kb on + strand at 628.033 kb on - strand at 628.056 kb on - strand, within HMPREF1078_RS10030 at 628.056 kb on - strand, within HMPREF1078_RS10030 at 628.094 kb on + strand, within HMPREF1078_RS10030 at 628.097 kb on + strand, within HMPREF1078_RS10030 at 628.097 kb on + strand, within HMPREF1078_RS10030 at 628.097 kb on + strand, within HMPREF1078_RS10030 at 628.097 kb on + strand, within HMPREF1078_RS10030 at 628.098 kb on - strand, within HMPREF1078_RS10030 at 628.115 kb on + strand, within HMPREF1078_RS10030 at 628.115 kb on + strand, within HMPREF1078_RS10030 at 628.194 kb on + strand, within HMPREF1078_RS10030 at 628.194 kb on + strand, within HMPREF1078_RS10030 at 628.195 kb on - strand, within HMPREF1078_RS10030 at 628.224 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.362 kb on + strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.363 kb on - strand, within HMPREF1078_RS10030 at 628.364 kb on + strand, within HMPREF1078_RS10030 at 628.364 kb on + strand, within HMPREF1078_RS10030 at 628.364 kb on + strand, within HMPREF1078_RS10030 at 628.364 kb on + strand, within HMPREF1078_RS10030 at 628.364 kb on + strand, within HMPREF1078_RS10030 at 628.365 kb on - strand, within HMPREF1078_RS10030 at 628.365 kb on - strand, within HMPREF1078_RS10030 at 628.365 kb on - strand, within HMPREF1078_RS10030 at 628.365 kb on - strand, within HMPREF1078_RS10030 at 628.365 kb on - strand, within HMPREF1078_RS10030 at 628.365 kb on - strand, within HMPREF1078_RS10030 at 628.465 kb on + strand, within HMPREF1078_RS10030 at 628.466 kb on - strand, within HMPREF1078_RS10030 at 628.487 kb on + strand, within HMPREF1078_RS10030 at 628.487 kb on + strand, within HMPREF1078_RS10030 at 628.487 kb on + strand, within HMPREF1078_RS10030 at 628.488 kb on - strand, within HMPREF1078_RS10030 at 628.495 kb on + strand, within HMPREF1078_RS10030 at 628.503 kb on + strand, within HMPREF1078_RS10030 at 628.504 kb on - strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.509 kb on + strand, within HMPREF1078_RS10030 at 628.510 kb on - strand, within HMPREF1078_RS10030 at 628.510 kb on - strand, within HMPREF1078_RS10030 at 628.510 kb on - strand, within HMPREF1078_RS10030 at 628.510 kb on - strand, within HMPREF1078_RS10030 at 628.510 kb on - strand, within HMPREF1078_RS10030 at 628.510 kb on - strand, within HMPREF1078_RS10030 at 628.511 kb on + strand, within HMPREF1078_RS10030 at 628.512 kb on - strand, within HMPREF1078_RS10030 at 628.526 kb on + strand, within HMPREF1078_RS10030 at 628.529 kb on + strand, within HMPREF1078_RS10030 at 628.625 kb on - strand, within HMPREF1078_RS10030 at 628.688 kb on + strand, within HMPREF1078_RS10030 at 628.689 kb on - strand, within HMPREF1078_RS10030 at 628.726 kb on + strand, within HMPREF1078_RS10030 at 628.727 kb on - strand, within HMPREF1078_RS10030 at 628.769 kb on + strand, within HMPREF1078_RS10030 at 628.770 kb on - strand, within HMPREF1078_RS10030 at 628.790 kb on + strand, within HMPREF1078_RS10030 at 628.791 kb on - strand, within HMPREF1078_RS10030 at 628.793 kb on + strand, within HMPREF1078_RS10030 at 628.793 kb on + strand, within HMPREF1078_RS10030 at 628.794 kb on - strand, within HMPREF1078_RS10030 at 628.809 kb on - strand, within HMPREF1078_RS10030
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 626,498 + -3.1 626,499 - -3.8 626,499 - -3.9 626,558 + -1.6 626,560 + -1.1 626,560 + -1.7 626,583 + +0.9 626,584 - -3.1 626,589 + +0.1 626,589 + -1.6 626,607 - -3.4 626,672 + -0.4 626,673 - HMPREF1078_RS10020 0.10 -2.9 626,700 + HMPREF1078_RS10020 0.13 -3.0 626,849 + HMPREF1078_RS10020 0.30 -3.4 626,849 + HMPREF1078_RS10020 0.30 -2.5 626,947 + HMPREF1078_RS10020 0.41 -4.6 626,948 - HMPREF1078_RS10020 0.41 +0.9 626,957 + HMPREF1078_RS10020 0.42 -2.3 626,958 - HMPREF1078_RS10020 0.42 -4.0 626,959 + HMPREF1078_RS10020 0.42 -2.2 626,960 - HMPREF1078_RS10020 0.42 -2.3 627,033 + HMPREF1078_RS10020 0.51 -1.8 627,033 + HMPREF1078_RS10020 0.51 -2.1 627,034 - HMPREF1078_RS10020 0.51 -2.6 627,034 - HMPREF1078_RS10020 0.51 -0.1 627,079 - HMPREF1078_RS10020 0.56 -0.9 627,079 - HMPREF1078_RS10020 0.56 -1.4 627,098 + HMPREF1078_RS10020 0.58 -2.1 627,099 - HMPREF1078_RS10020 0.58 -1.7 627,159 + HMPREF1078_RS10020 0.65 -2.6 627,197 + HMPREF1078_RS10020 0.69 -2.0 627,198 - HMPREF1078_RS10020 0.69 -0.6 627,198 - HMPREF1078_RS10020 0.69 -2.7 627,347 + HMPREF1078_RS10020 0.86 -2.7 627,384 + -2.2 627,384 + +0.9 627,384 + -0.7 627,385 - +0.6 627,385 - -2.5 627,385 - -2.7 627,473 + +0.4 627,474 - -0.6 627,474 - -3.0 627,509 + -0.1 627,509 + -3.6 627,509 + -3.2 627,509 + -2.5 627,510 - -2.7 627,510 - -2.8 627,510 - -0.1 627,510 - -2.9 627,510 - +0.1 627,511 + +0.2 627,514 + -4.4 627,514 + -2.6 627,514 + -1.6 627,515 - -3.1 627,528 + -0.7 627,529 - -2.8 627,530 + -3.3 627,530 + -1.8 627,531 - -3.3 627,532 + -4.0 627,532 + -3.9 627,532 + -3.0 627,532 + -3.6 627,532 + -3.1 627,538 - HMPREF1078_RS10025 0.10 -1.6 627,542 - HMPREF1078_RS10025 0.11 -2.1 627,542 - HMPREF1078_RS10025 0.11 -2.9 627,542 - HMPREF1078_RS10025 0.11 -1.4 627,542 - HMPREF1078_RS10025 0.11 +0.1 627,542 - HMPREF1078_RS10025 0.11 -1.3 627,573 + HMPREF1078_RS10025 0.18 -3.1 627,573 + HMPREF1078_RS10025 0.18 -1.7 627,573 + HMPREF1078_RS10025 0.18 -1.8 627,573 + HMPREF1078_RS10025 0.18 -0.9 627,574 - HMPREF1078_RS10025 0.19 +1.4 627,634 + HMPREF1078_RS10025 0.32 -2.0 627,635 - HMPREF1078_RS10025 0.33 +0.4 627,662 - HMPREF1078_RS10025 0.39 -0.1 627,744 + HMPREF1078_RS10025 0.58 -2.4 627,745 - HMPREF1078_RS10025 0.58 -0.7 627,757 + HMPREF1078_RS10025 0.61 -1.7 627,763 + HMPREF1078_RS10025 0.62 -2.4 627,764 - HMPREF1078_RS10025 0.62 +1.4 627,764 - HMPREF1078_RS10025 0.62 +0.4 627,776 - HMPREF1078_RS10025 0.65 -2.2 627,799 - HMPREF1078_RS10025 0.71 +0.1 627,799 - HMPREF1078_RS10025 0.71 -2.8 627,859 - HMPREF1078_RS10025 0.84 -0.6 627,918 + +0.9 627,919 - -3.6 627,923 + -1.9 627,924 - -0.4 627,926 + -0.8 627,926 + -0.7 627,926 + -0.4 627,926 + -2.2 627,927 - -3.5 627,927 - -2.0 627,927 - -2.0 627,929 + -1.6 627,929 + -3.1 627,929 + -3.6 627,934 + -1.3 627,934 + -2.5 627,934 + +0.9 627,934 + -3.7 627,935 - -1.7 627,935 - +0.3 627,935 - +1.4 627,935 - +2.4 627,946 + -0.8 627,946 + -4.3 627,947 - -1.3 627,949 + -3.5 628,021 - -1.6 628,021 - -2.9 628,022 + -3.6 628,033 - -1.6 628,056 - HMPREF1078_RS10030 0.11 -2.9 628,056 - HMPREF1078_RS10030 0.11 -2.0 628,094 + HMPREF1078_RS10030 0.14 +1.4 628,097 + HMPREF1078_RS10030 0.14 -3.6 628,097 + HMPREF1078_RS10030 0.14 -2.8 628,097 + HMPREF1078_RS10030 0.14 -3.0 628,097 + HMPREF1078_RS10030 0.14 -2.6 628,098 - HMPREF1078_RS10030 0.14 -3.5 628,115 + HMPREF1078_RS10030 0.15 -4.2 628,115 + HMPREF1078_RS10030 0.15 -4.9 628,194 + HMPREF1078_RS10030 0.22 -4.7 628,194 + HMPREF1078_RS10030 0.22 -0.4 628,195 - HMPREF1078_RS10030 0.22 +0.6 628,224 + HMPREF1078_RS10030 0.25 -2.7 628,362 + HMPREF1078_RS10030 0.36 -2.1 628,362 + HMPREF1078_RS10030 0.36 -3.1 628,362 + HMPREF1078_RS10030 0.36 -0.1 628,362 + HMPREF1078_RS10030 0.36 -2.4 628,362 + HMPREF1078_RS10030 0.36 -2.0 628,362 + HMPREF1078_RS10030 0.36 -2.0 628,362 + HMPREF1078_RS10030 0.36 -3.2 628,362 + HMPREF1078_RS10030 0.36 -1.0 628,362 + HMPREF1078_RS10030 0.36 -3.9 628,362 + HMPREF1078_RS10030 0.36 -1.6 628,363 - HMPREF1078_RS10030 0.36 -1.3 628,363 - HMPREF1078_RS10030 0.36 -3.0 628,363 - HMPREF1078_RS10030 0.36 +0.1 628,363 - HMPREF1078_RS10030 0.36 -0.7 628,363 - HMPREF1078_RS10030 0.36 -2.0 628,363 - HMPREF1078_RS10030 0.36 -2.0 628,363 - HMPREF1078_RS10030 0.36 -3.0 628,364 + HMPREF1078_RS10030 0.36 -2.8 628,364 + HMPREF1078_RS10030 0.36 -1.4 628,364 + HMPREF1078_RS10030 0.36 -3.3 628,364 + HMPREF1078_RS10030 0.36 -3.0 628,364 + HMPREF1078_RS10030 0.36 -3.0 628,365 - HMPREF1078_RS10030 0.36 -3.4 628,365 - HMPREF1078_RS10030 0.36 -1.9 628,365 - HMPREF1078_RS10030 0.36 -4.0 628,365 - HMPREF1078_RS10030 0.36 -3.6 628,365 - HMPREF1078_RS10030 0.36 +0.1 628,365 - HMPREF1078_RS10030 0.36 -2.7 628,465 + HMPREF1078_RS10030 0.45 -2.0 628,466 - HMPREF1078_RS10030 0.45 -1.7 628,487 + HMPREF1078_RS10030 0.47 -3.1 628,487 + HMPREF1078_RS10030 0.47 -2.2 628,487 + HMPREF1078_RS10030 0.47 -2.8 628,488 - HMPREF1078_RS10030 0.47 -3.3 628,495 + HMPREF1078_RS10030 0.47 -2.6 628,503 + HMPREF1078_RS10030 0.48 +0.1 628,504 - HMPREF1078_RS10030 0.48 -1.2 628,509 + HMPREF1078_RS10030 0.48 -1.1 628,509 + HMPREF1078_RS10030 0.48 -3.1 628,509 + HMPREF1078_RS10030 0.48 -2.3 628,509 + HMPREF1078_RS10030 0.48 -3.1 628,509 + HMPREF1078_RS10030 0.48 -1.1 628,509 + HMPREF1078_RS10030 0.48 -3.2 628,509 + HMPREF1078_RS10030 0.48 -3.0 628,509 + HMPREF1078_RS10030 0.48 -4.6 628,509 + HMPREF1078_RS10030 0.48 -2.5 628,510 - HMPREF1078_RS10030 0.48 -2.5 628,510 - HMPREF1078_RS10030 0.48 -2.3 628,510 - HMPREF1078_RS10030 0.48 +0.9 628,510 - HMPREF1078_RS10030 0.48 -1.0 628,510 - HMPREF1078_RS10030 0.48 -2.0 628,510 - HMPREF1078_RS10030 0.48 -2.5 628,511 + HMPREF1078_RS10030 0.49 -1.0 628,512 - HMPREF1078_RS10030 0.49 -1.3 628,526 + HMPREF1078_RS10030 0.50 -2.3 628,529 + HMPREF1078_RS10030 0.50 -1.6 628,625 - HMPREF1078_RS10030 0.58 -1.6 628,688 + HMPREF1078_RS10030 0.63 -1.5 628,689 - HMPREF1078_RS10030 0.63 -0.9 628,726 + HMPREF1078_RS10030 0.66 -2.6 628,727 - HMPREF1078_RS10030 0.67 -3.5 628,769 + HMPREF1078_RS10030 0.70 -1.6 628,770 - HMPREF1078_RS10030 0.70 -3.2 628,790 + HMPREF1078_RS10030 0.72 -1.6 628,791 - HMPREF1078_RS10030 0.72 +0.1 628,793 + HMPREF1078_RS10030 0.72 -2.0 628,793 + HMPREF1078_RS10030 0.72 -2.4 628,794 - HMPREF1078_RS10030 0.72 -2.8 628,809 - HMPREF1078_RS10030 0.73 +0.9
Or see this region's nucleotide sequence