Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09320 and HMPREF1078_RS09325 are separated by 92 nucleotides HMPREF1078_RS09325 and HMPREF1078_RS09330 are separated by 4 nucleotides HMPREF1078_RS09330 and HMPREF1078_RS09335 overlap by 29 nucleotides
HMPREF1078_RS09320: HMPREF1078_RS09320 - conjugative transposon protein TraJ, at 451,676 to 452,704
_RS09320
HMPREF1078_RS09325: HMPREF1078_RS09325 - conjugative transposon protein TraK, at 452,797 to 453,420
_RS09325
HMPREF1078_RS09330: HMPREF1078_RS09330 - TraL conjugative transposon family protein, at 453,425 to 453,712
_RS09330
HMPREF1078_RS09335: HMPREF1078_RS09335 - conjugative transposon protein TraM, at 453,684 to 455,009
_RS09335
Position (kb) 452
453
454 Strain fitness (log2 ratio) -2
-1
0
1
2 at 451.992 kb on - strand, within HMPREF1078_RS09320 at 452.136 kb on - strand, within HMPREF1078_RS09320 at 452.136 kb on - strand, within HMPREF1078_RS09320 at 452.154 kb on - strand, within HMPREF1078_RS09320 at 452.343 kb on - strand, within HMPREF1078_RS09320 at 452.410 kb on - strand, within HMPREF1078_RS09320 at 452.484 kb on - strand, within HMPREF1078_RS09320 at 452.733 kb on - strand at 452.844 kb on - strand at 452.943 kb on - strand, within HMPREF1078_RS09325 at 452.949 kb on - strand, within HMPREF1078_RS09325 at 452.949 kb on - strand, within HMPREF1078_RS09325 at 453.134 kb on - strand, within HMPREF1078_RS09325 at 453.425 kb on - strand at 453.440 kb on - strand at 453.569 kb on - strand, within HMPREF1078_RS09330 at 453.622 kb on - strand, within HMPREF1078_RS09330 at 453.672 kb on - strand, within HMPREF1078_RS09330 at 453.677 kb on - strand, within HMPREF1078_RS09330 at 453.682 kb on - strand, within HMPREF1078_RS09330 at 453.684 kb on - strand at 453.756 kb on - strand at 453.846 kb on - strand, within HMPREF1078_RS09335 at 453.846 kb on - strand, within HMPREF1078_RS09335 at 453.928 kb on - strand, within HMPREF1078_RS09335 at 454.094 kb on - strand, within HMPREF1078_RS09335 at 454.152 kb on - strand, within HMPREF1078_RS09335
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 451,992 - HMPREF1078_RS09320 0.31 +0.4 452,136 - HMPREF1078_RS09320 0.45 -0.7 452,136 - HMPREF1078_RS09320 0.45 +0.6 452,154 - HMPREF1078_RS09320 0.46 -0.3 452,343 - HMPREF1078_RS09320 0.65 +0.8 452,410 - HMPREF1078_RS09320 0.71 -2.6 452,484 - HMPREF1078_RS09320 0.79 -1.6 452,733 - +1.4 452,844 - +0.1 452,943 - HMPREF1078_RS09325 0.23 -1.7 452,949 - HMPREF1078_RS09325 0.24 -0.6 452,949 - HMPREF1078_RS09325 0.24 +2.4 453,134 - HMPREF1078_RS09325 0.54 -0.6 453,425 - -0.2 453,440 - +2.0 453,569 - HMPREF1078_RS09330 0.50 +0.0 453,622 - HMPREF1078_RS09330 0.68 -0.2 453,672 - HMPREF1078_RS09330 0.86 -2.1 453,677 - HMPREF1078_RS09330 0.88 +0.5 453,682 - HMPREF1078_RS09330 0.89 +0.5 453,684 - -1.3 453,756 - -2.6 453,846 - HMPREF1078_RS09335 0.12 +1.3 453,846 - HMPREF1078_RS09335 0.12 -2.0 453,928 - HMPREF1078_RS09335 0.18 +0.4 454,094 - HMPREF1078_RS09335 0.31 +2.4 454,152 - HMPREF1078_RS09335 0.35 +0.2
Or see this region's nucleotide sequence