Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09270 and HMPREF1078_RS09275 are separated by 5 nucleotides HMPREF1078_RS09275 and HMPREF1078_RS09280 are separated by 36 nucleotides HMPREF1078_RS09280 and HMPREF1078_RS09285 overlap by 7 nucleotides
HMPREF1078_RS09270: HMPREF1078_RS09270 - ParA family protein, at 444,209 to 444,967
_RS09270
HMPREF1078_RS09275: HMPREF1078_RS09275 - DUF3408 domain-containing protein, at 444,973 to 445,389
_RS09275
HMPREF1078_RS09280: HMPREF1078_RS09280 - DUF3408 domain-containing protein, at 445,426 to 445,722
_RS09280
HMPREF1078_RS09285: HMPREF1078_RS09285 - hypothetical protein, at 445,716 to 446,390
_RS09285
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.995 kb on - strand at 443.999 kb on - strand at 443.999 kb on - strand at 444.003 kb on - strand at 444.003 kb on - strand at 444.019 kb on - strand at 444.023 kb on - strand at 444.023 kb on - strand at 444.023 kb on - strand at 444.023 kb on - strand at 444.035 kb on - strand at 444.043 kb on - strand at 444.043 kb on - strand at 444.127 kb on - strand at 444.127 kb on - strand at 444.127 kb on - strand at 444.165 kb on - strand at 444.201 kb on - strand at 444.313 kb on - strand, within HMPREF1078_RS09270 at 444.388 kb on - strand, within HMPREF1078_RS09270 at 444.603 kb on - strand, within HMPREF1078_RS09270 at 444.946 kb on - strand at 444.946 kb on - strand at 445.005 kb on - strand at 445.101 kb on - strand, within HMPREF1078_RS09275 at 445.132 kb on - strand, within HMPREF1078_RS09275 at 445.475 kb on - strand, within HMPREF1078_RS09280 at 445.716 kb on - strand at 445.962 kb on - strand, within HMPREF1078_RS09285 at 446.348 kb on - strand at 446.387 kb on - strand at 446.387 kb on - strand at 446.387 kb on - strand at 446.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 443,995 - +0.4 443,999 - +1.1 443,999 - +0.1 444,003 - -0.1 444,003 - +0.1 444,019 - -0.4 444,023 - +0.7 444,023 - -0.6 444,023 - +0.8 444,023 - +0.4 444,035 - +0.1 444,043 - +1.4 444,043 - -1.4 444,127 - -0.3 444,127 - -0.4 444,127 - -1.9 444,165 - -0.5 444,201 - -1.2 444,313 - HMPREF1078_RS09270 0.14 -0.2 444,388 - HMPREF1078_RS09270 0.24 +0.8 444,603 - HMPREF1078_RS09270 0.52 +0.2 444,946 - -2.9 444,946 - -0.2 445,005 - -1.5 445,101 - HMPREF1078_RS09275 0.31 -0.2 445,132 - HMPREF1078_RS09275 0.38 -1.1 445,475 - HMPREF1078_RS09280 0.16 +1.1 445,716 - +0.8 445,962 - HMPREF1078_RS09285 0.36 +0.5 446,348 - -0.8 446,387 - +1.8 446,387 - -3.1 446,387 - +0.1 446,389 - -0.2
Or see this region's nucleotide sequence