Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08745 and HMPREF1078_RS19870 are separated by 180 nucleotides HMPREF1078_RS19870 and HMPREF1078_RS18690 overlap by 20 nucleotides HMPREF1078_RS18690 and HMPREF1078_RS08755 are separated by 136 nucleotides HMPREF1078_RS08755 and HMPREF1078_RS08760 are separated by 28 nucleotides HMPREF1078_RS08760 and HMPREF1078_RS08765 are separated by 28 nucleotides HMPREF1078_RS08765 and HMPREF1078_RS19190 are separated by 91 nucleotides
HMPREF1078_RS08745: HMPREF1078_RS08745 - hypothetical protein, at 336,735 to 337,955
_RS08745
HMPREF1078_RS19870: HMPREF1078_RS19870 - hypothetical protein, at 338,136 to 338,371
_RS19870
HMPREF1078_RS18690: HMPREF1078_RS18690 - site-specific integrase, at 338,352 to 338,555
_RS18690
HMPREF1078_RS08755: HMPREF1078_RS08755 - tRNA-Lys, at 338,692 to 338,764
_RS08755
HMPREF1078_RS08760: HMPREF1078_RS08760 - tRNA-Lys, at 338,793 to 338,865
_RS08760
HMPREF1078_RS08765: HMPREF1078_RS08765 - tRNA-Lys, at 338,894 to 338,966
_RS08765
HMPREF1078_RS19190: HMPREF1078_RS19190 - MBL fold metallo-hydrolase, at 339,058 to 339,861
_RS19190
Position (kb) 338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.813 kb on + strand, within HMPREF1078_RS08745 at 337.829 kb on + strand, within HMPREF1078_RS08745 at 337.829 kb on + strand, within HMPREF1078_RS08745 at 337.829 kb on + strand, within HMPREF1078_RS08745 at 337.830 kb on - strand, within HMPREF1078_RS08745 at 337.868 kb on - strand at 337.934 kb on - strand at 337.961 kb on + strand at 337.962 kb on - strand at 337.986 kb on + strand at 337.987 kb on - strand at 337.987 kb on - strand at 338.004 kb on - strand at 338.008 kb on - strand at 338.008 kb on - strand at 338.015 kb on - strand at 338.027 kb on - strand at 338.034 kb on - strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.036 kb on + strand at 338.037 kb on - strand at 338.041 kb on - strand at 338.063 kb on + strand at 338.070 kb on - strand at 338.071 kb on + strand at 338.071 kb on + strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.072 kb on - strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.076 kb on + strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.077 kb on - strand at 338.078 kb on + strand at 338.078 kb on + strand at 338.078 kb on + strand at 338.079 kb on - strand at 338.080 kb on + strand at 338.087 kb on - strand at 338.140 kb on - strand at 338.152 kb on + strand at 338.153 kb on - strand at 338.187 kb on - strand, within HMPREF1078_RS19870 at 338.189 kb on - strand, within HMPREF1078_RS19870 at 338.227 kb on - strand, within HMPREF1078_RS19870 at 338.286 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.292 kb on + strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.293 kb on - strand, within HMPREF1078_RS19870 at 338.368 kb on + strand at 338.368 kb on + strand at 338.368 kb on + strand at 338.368 kb on + strand at 338.369 kb on - strand at 338.369 kb on - strand at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.379 kb on + strand, within HMPREF1078_RS18690 at 338.402 kb on + strand, within HMPREF1078_RS18690 at 338.402 kb on + strand, within HMPREF1078_RS18690 at 338.416 kb on - strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.429 kb on + strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.430 kb on - strand, within HMPREF1078_RS18690 at 338.451 kb on + strand, within HMPREF1078_RS18690 at 338.488 kb on - strand, within HMPREF1078_RS18690 at 338.566 kb on + strand at 338.615 kb on + strand at 338.616 kb on - strand at 338.620 kb on - strand at 338.623 kb on + strand at 338.623 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.639 kb on - strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.646 kb on - strand at 338.673 kb on + strand at 338.685 kb on + strand at 338.685 kb on + strand at 338.685 kb on + strand at 338.686 kb on - strand at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.728 kb on + strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.729 kb on - strand, within HMPREF1078_RS08755 at 338.745 kb on - strand, within HMPREF1078_RS08755 at 338.757 kb on - strand at 338.757 kb on - strand at 338.757 kb on - strand at 338.757 kb on - strand at 338.787 kb on - strand at 338.787 kb on - strand at 338.857 kb on + strand, within HMPREF1078_RS08760 at 338.868 kb on + strand at 338.958 kb on + strand, within HMPREF1078_RS08765 at 338.975 kb on + strand at 339.074 kb on - strand at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.165 kb on + strand, within HMPREF1078_RS19190 at 339.166 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.168 kb on - strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.186 kb on + strand, within HMPREF1078_RS19190 at 339.217 kb on - strand, within HMPREF1078_RS19190 at 339.223 kb on + strand, within HMPREF1078_RS19190 at 339.224 kb on - strand, within HMPREF1078_RS19190 at 339.320 kb on + strand, within HMPREF1078_RS19190 at 339.361 kb on + strand, within HMPREF1078_RS19190 at 339.389 kb on + strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.390 kb on - strand, within HMPREF1078_RS19190 at 339.393 kb on + strand, within HMPREF1078_RS19190 at 339.411 kb on + strand, within HMPREF1078_RS19190 at 339.436 kb on - strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.441 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.461 kb on + strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.462 kb on - strand, within HMPREF1078_RS19190 at 339.481 kb on - strand, within HMPREF1078_RS19190 at 339.483 kb on + strand, within HMPREF1078_RS19190 at 339.484 kb on - strand, within HMPREF1078_RS19190 at 339.508 kb on - strand, within HMPREF1078_RS19190 at 339.528 kb on + strand, within HMPREF1078_RS19190 at 339.637 kb on - strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.661 kb on + strand, within HMPREF1078_RS19190 at 339.672 kb on + strand, within HMPREF1078_RS19190 at 339.757 kb on - strand, within HMPREF1078_RS19190 at 339.812 kb on + strand at 339.838 kb on + strand at 339.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 337,813 + HMPREF1078_RS08745 0.88 -0.9 337,829 + HMPREF1078_RS08745 0.90 +1.4 337,829 + HMPREF1078_RS08745 0.90 -0.9 337,829 + HMPREF1078_RS08745 0.90 -2.6 337,830 - HMPREF1078_RS08745 0.90 +0.3 337,868 - +0.4 337,934 - +0.1 337,961 + +0.1 337,962 - +0.8 337,986 + +1.1 337,987 - -0.2 337,987 - +1.4 338,004 - -0.6 338,008 - +3.7 338,008 - +0.8 338,015 - +2.4 338,027 - +0.8 338,034 - -1.0 338,036 + +0.6 338,036 + -0.4 338,036 + +0.4 338,036 + -0.2 338,036 + -1.0 338,037 - -0.6 338,041 - -0.9 338,063 + +1.2 338,070 - +0.4 338,071 + +0.1 338,071 + +1.4 338,072 - -2.3 338,072 - -0.7 338,072 - +2.4 338,072 - +1.4 338,076 + -0.2 338,076 + +0.1 338,076 + -1.0 338,076 + -1.4 338,076 + +0.6 338,077 - -0.4 338,077 - -0.2 338,077 - +0.1 338,077 - +2.4 338,078 + -1.9 338,078 + -0.6 338,078 + -0.9 338,079 - -0.6 338,080 + -1.4 338,087 - +0.2 338,140 - +0.8 338,152 + -1.8 338,153 - +0.4 338,187 - HMPREF1078_RS19870 0.22 +0.5 338,189 - HMPREF1078_RS19870 0.22 -0.9 338,227 - HMPREF1078_RS19870 0.39 -2.1 338,286 + HMPREF1078_RS19870 0.64 +1.8 338,292 + HMPREF1078_RS19870 0.66 -0.2 338,292 + HMPREF1078_RS19870 0.66 -1.5 338,292 + HMPREF1078_RS19870 0.66 -0.2 338,292 + HMPREF1078_RS19870 0.66 -1.0 338,292 + HMPREF1078_RS19870 0.66 -1.0 338,293 - HMPREF1078_RS19870 0.67 -0.6 338,293 - HMPREF1078_RS19870 0.67 +2.0 338,293 - HMPREF1078_RS19870 0.67 -3.0 338,368 + -0.3 338,368 + -0.6 338,368 + -1.2 338,368 + -1.2 338,369 - +1.4 338,369 - +2.4 338,379 + HMPREF1078_RS18690 0.13 -0.5 338,379 + HMPREF1078_RS18690 0.13 -0.5 338,379 + HMPREF1078_RS18690 0.13 -0.0 338,402 + HMPREF1078_RS18690 0.25 +1.1 338,402 + HMPREF1078_RS18690 0.25 -0.4 338,416 - HMPREF1078_RS18690 0.31 +0.8 338,429 + HMPREF1078_RS18690 0.38 -1.4 338,429 + HMPREF1078_RS18690 0.38 +1.6 338,429 + HMPREF1078_RS18690 0.38 +1.4 338,429 + HMPREF1078_RS18690 0.38 -0.1 338,429 + HMPREF1078_RS18690 0.38 -0.2 338,430 - HMPREF1078_RS18690 0.38 -0.2 338,430 - HMPREF1078_RS18690 0.38 +0.7 338,430 - HMPREF1078_RS18690 0.38 +0.2 338,430 - HMPREF1078_RS18690 0.38 -0.4 338,430 - HMPREF1078_RS18690 0.38 -0.2 338,430 - HMPREF1078_RS18690 0.38 -1.9 338,451 + HMPREF1078_RS18690 0.49 -2.0 338,488 - HMPREF1078_RS18690 0.67 +1.2 338,566 + +1.4 338,615 + -0.4 338,616 - +2.4 338,620 - -1.6 338,623 + +1.4 338,623 + +0.3 338,638 + +0.8 338,638 + -0.9 338,638 + -0.4 338,638 + +0.7 338,639 - +2.0 338,640 + -0.3 338,640 + -0.2 338,640 + -1.1 338,640 + +0.7 338,641 - +2.4 338,641 - -0.2 338,641 - +0.8 338,646 - +1.1 338,673 + -1.0 338,685 + +2.4 338,685 + -0.9 338,685 + +0.0 338,686 - +0.0 338,728 + HMPREF1078_RS08755 0.49 +0.8 338,728 + HMPREF1078_RS08755 0.49 +0.1 338,728 + HMPREF1078_RS08755 0.49 +0.4 338,729 - HMPREF1078_RS08755 0.51 -0.2 338,729 - HMPREF1078_RS08755 0.51 -1.0 338,729 - HMPREF1078_RS08755 0.51 +0.8 338,729 - HMPREF1078_RS08755 0.51 -1.7 338,729 - HMPREF1078_RS08755 0.51 -1.9 338,729 - HMPREF1078_RS08755 0.51 -1.0 338,745 - HMPREF1078_RS08755 0.73 -0.0 338,757 - +1.2 338,757 - -0.8 338,757 - -0.7 338,757 - -0.0 338,787 - -1.5 338,787 - -0.1 338,857 + HMPREF1078_RS08760 0.88 -1.8 338,868 + -1.7 338,958 + HMPREF1078_RS08765 0.88 +1.0 338,975 + +0.8 339,074 - -1.0 339,165 + HMPREF1078_RS19190 0.13 -0.6 339,165 + HMPREF1078_RS19190 0.13 -1.4 339,166 - HMPREF1078_RS19190 0.13 -1.6 339,168 - HMPREF1078_RS19190 0.14 +2.4 339,168 - HMPREF1078_RS19190 0.14 -1.5 339,168 - HMPREF1078_RS19190 0.14 -1.8 339,168 - HMPREF1078_RS19190 0.14 +0.3 339,186 + HMPREF1078_RS19190 0.16 +0.1 339,186 + HMPREF1078_RS19190 0.16 +1.4 339,217 - HMPREF1078_RS19190 0.20 -1.2 339,223 + HMPREF1078_RS19190 0.21 -1.5 339,224 - HMPREF1078_RS19190 0.21 -2.0 339,320 + HMPREF1078_RS19190 0.33 -0.9 339,361 + HMPREF1078_RS19190 0.38 +0.8 339,389 + HMPREF1078_RS19190 0.41 -0.6 339,390 - HMPREF1078_RS19190 0.41 -1.0 339,390 - HMPREF1078_RS19190 0.41 -1.0 339,393 + HMPREF1078_RS19190 0.42 -1.2 339,411 + HMPREF1078_RS19190 0.44 +0.8 339,436 - HMPREF1078_RS19190 0.47 +2.4 339,441 + HMPREF1078_RS19190 0.48 +0.8 339,441 + HMPREF1078_RS19190 0.48 +0.2 339,441 + HMPREF1078_RS19190 0.48 +2.4 339,441 + HMPREF1078_RS19190 0.48 +0.4 339,461 + HMPREF1078_RS19190 0.50 -0.9 339,461 + HMPREF1078_RS19190 0.50 -0.6 339,462 - HMPREF1078_RS19190 0.50 -0.2 339,462 - HMPREF1078_RS19190 0.50 +0.1 339,481 - HMPREF1078_RS19190 0.53 -0.4 339,483 + HMPREF1078_RS19190 0.53 -0.8 339,484 - HMPREF1078_RS19190 0.53 -1.2 339,508 - HMPREF1078_RS19190 0.56 +0.8 339,528 + HMPREF1078_RS19190 0.58 +1.2 339,637 - HMPREF1078_RS19190 0.72 +1.4 339,661 + HMPREF1078_RS19190 0.75 -0.8 339,661 + HMPREF1078_RS19190 0.75 +0.7 339,672 + HMPREF1078_RS19190 0.76 -0.5 339,757 - HMPREF1078_RS19190 0.87 +0.6 339,812 + +1.4 339,838 + -1.8 339,839 - -1.0
Or see this region's nucleotide sequence