Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07860 and HMPREF1078_RS07865 are separated by 62 nucleotides HMPREF1078_RS07865 and HMPREF1078_RS07875 are separated by 477 nucleotides
HMPREF1078_RS07860: HMPREF1078_RS07860 - methylenetetrahydrofolate reductase [NAD(P)H], at 128,149 to 129,099
_RS07860
HMPREF1078_RS07865: HMPREF1078_RS07865 - asparaginase, at 129,162 to 130,205
_RS07865
HMPREF1078_RS07875: HMPREF1078_RS07875 - DNA polymerase III subunit delta, at 130,683 to 131,807
_RS07875
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 128.172 kb on + strand at 128.184 kb on + strand at 128.232 kb on - strand at 128.232 kb on - strand at 128.232 kb on - strand at 128.240 kb on + strand at 128.240 kb on + strand at 128.241 kb on - strand at 128.242 kb on + strand at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.244 kb on + strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.245 kb on - strand, within HMPREF1078_RS07860 at 128.252 kb on + strand, within HMPREF1078_RS07860 at 128.281 kb on + strand, within HMPREF1078_RS07860 at 128.281 kb on + strand, within HMPREF1078_RS07860 at 128.281 kb on + strand, within HMPREF1078_RS07860 at 128.282 kb on - strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.289 kb on + strand, within HMPREF1078_RS07860 at 128.290 kb on - strand, within HMPREF1078_RS07860 at 128.290 kb on - strand, within HMPREF1078_RS07860 at 128.291 kb on + strand, within HMPREF1078_RS07860 at 128.291 kb on + strand, within HMPREF1078_RS07860 at 128.292 kb on - strand, within HMPREF1078_RS07860 at 128.312 kb on - strand, within HMPREF1078_RS07860 at 128.313 kb on + strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.314 kb on - strand, within HMPREF1078_RS07860 at 128.317 kb on + strand, within HMPREF1078_RS07860 at 128.318 kb on - strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.337 kb on + strand, within HMPREF1078_RS07860 at 128.403 kb on + strand, within HMPREF1078_RS07860 at 128.407 kb on + strand, within HMPREF1078_RS07860 at 128.430 kb on + strand, within HMPREF1078_RS07860 at 128.431 kb on - strand, within HMPREF1078_RS07860 at 128.433 kb on + strand, within HMPREF1078_RS07860 at 128.433 kb on + strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.434 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.436 kb on - strand, within HMPREF1078_RS07860 at 128.449 kb on - strand, within HMPREF1078_RS07860 at 128.467 kb on + strand, within HMPREF1078_RS07860 at 128.468 kb on - strand, within HMPREF1078_RS07860 at 128.468 kb on - strand, within HMPREF1078_RS07860 at 128.468 kb on - strand, within HMPREF1078_RS07860 at 128.501 kb on - strand, within HMPREF1078_RS07860 at 128.528 kb on + strand, within HMPREF1078_RS07860 at 128.528 kb on + strand, within HMPREF1078_RS07860 at 128.561 kb on + strand, within HMPREF1078_RS07860 at 128.561 kb on + strand, within HMPREF1078_RS07860 at 128.561 kb on + strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.562 kb on - strand, within HMPREF1078_RS07860 at 128.563 kb on + strand, within HMPREF1078_RS07860 at 128.563 kb on + strand, within HMPREF1078_RS07860 at 128.564 kb on - strand, within HMPREF1078_RS07860 at 128.564 kb on - strand, within HMPREF1078_RS07860 at 128.564 kb on - strand, within HMPREF1078_RS07860 at 128.721 kb on + strand, within HMPREF1078_RS07860 at 128.729 kb on - strand, within HMPREF1078_RS07860 at 128.761 kb on + strand, within HMPREF1078_RS07860 at 128.800 kb on + strand, within HMPREF1078_RS07860 at 128.800 kb on + strand, within HMPREF1078_RS07860 at 128.811 kb on - strand, within HMPREF1078_RS07860 at 128.870 kb on + strand, within HMPREF1078_RS07860 at 128.898 kb on + strand, within HMPREF1078_RS07860 at 128.899 kb on - strand, within HMPREF1078_RS07860 at 129.038 kb on + strand at 129.039 kb on - strand at 129.047 kb on - strand at 129.049 kb on - strand at 129.073 kb on + strand at 129.074 kb on - strand at 129.074 kb on - strand at 129.074 kb on - strand at 129.075 kb on + strand at 129.076 kb on - strand at 129.076 kb on - strand at 129.094 kb on + strand at 129.094 kb on + strand at 129.112 kb on - strand at 129.155 kb on + strand at 129.155 kb on + strand at 129.158 kb on - strand at 129.173 kb on + strand at 129.210 kb on + strand at 129.210 kb on + strand at 129.210 kb on + strand at 129.211 kb on - strand at 129.227 kb on + strand at 129.227 kb on + strand at 129.227 kb on + strand at 129.227 kb on + strand at 129.227 kb on + strand at 129.227 kb on + strand at 129.228 kb on - strand at 129.228 kb on - strand at 129.284 kb on - strand, within HMPREF1078_RS07865 at 129.485 kb on + strand, within HMPREF1078_RS07865 at 129.529 kb on - strand, within HMPREF1078_RS07865 at 129.546 kb on - strand, within HMPREF1078_RS07865 at 129.563 kb on - strand, within HMPREF1078_RS07865 at 129.563 kb on - strand, within HMPREF1078_RS07865 at 129.598 kb on + strand, within HMPREF1078_RS07865 at 129.616 kb on + strand, within HMPREF1078_RS07865 at 129.616 kb on + strand, within HMPREF1078_RS07865 at 129.616 kb on + strand, within HMPREF1078_RS07865 at 129.616 kb on + strand, within HMPREF1078_RS07865 at 129.617 kb on - strand, within HMPREF1078_RS07865 at 129.617 kb on - strand, within HMPREF1078_RS07865 at 129.617 kb on - strand, within HMPREF1078_RS07865 at 129.620 kb on + strand, within HMPREF1078_RS07865 at 129.620 kb on + strand, within HMPREF1078_RS07865 at 129.652 kb on + strand, within HMPREF1078_RS07865 at 129.653 kb on - strand, within HMPREF1078_RS07865 at 129.653 kb on - strand, within HMPREF1078_RS07865 at 129.656 kb on + strand, within HMPREF1078_RS07865 at 129.656 kb on + strand, within HMPREF1078_RS07865 at 129.656 kb on + strand, within HMPREF1078_RS07865 at 129.656 kb on + strand, within HMPREF1078_RS07865 at 129.657 kb on - strand, within HMPREF1078_RS07865 at 129.762 kb on - strand, within HMPREF1078_RS07865 at 129.822 kb on - strand, within HMPREF1078_RS07865 at 129.830 kb on + strand, within HMPREF1078_RS07865 at 129.831 kb on - strand, within HMPREF1078_RS07865 at 129.887 kb on + strand, within HMPREF1078_RS07865 at 129.888 kb on - strand, within HMPREF1078_RS07865 at 129.952 kb on + strand, within HMPREF1078_RS07865 at 129.952 kb on + strand, within HMPREF1078_RS07865 at 129.953 kb on - strand, within HMPREF1078_RS07865 at 129.953 kb on - strand, within HMPREF1078_RS07865 at 130.044 kb on - strand, within HMPREF1078_RS07865 at 130.081 kb on - strand, within HMPREF1078_RS07865 at 130.154 kb on + strand at 130.154 kb on + strand at 130.163 kb on + strand at 130.163 kb on + strand at 130.163 kb on + strand at 130.163 kb on + strand at 130.163 kb on + strand at 130.164 kb on - strand at 130.164 kb on - strand at 130.166 kb on - strand at 130.167 kb on + strand at 130.167 kb on + strand at 130.168 kb on - strand at 130.168 kb on - strand at 130.168 kb on - strand at 130.169 kb on + strand at 130.169 kb on + strand at 130.170 kb on - strand at 130.170 kb on - strand at 130.170 kb on - strand at 130.170 kb on - strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.205 kb on + strand at 130.206 kb on - strand at 130.208 kb on + strand at 130.208 kb on + strand at 130.208 kb on + strand at 130.218 kb on - strand at 130.218 kb on - strand at 130.252 kb on - strand at 130.252 kb on - strand at 130.255 kb on - strand at 130.255 kb on - strand at 130.293 kb on - strand at 130.309 kb on + strand at 130.403 kb on + strand at 130.410 kb on - strand at 130.416 kb on + strand at 130.417 kb on - strand at 130.481 kb on + strand at 130.488 kb on - strand at 130.521 kb on + strand at 130.522 kb on - strand at 130.525 kb on + strand at 130.525 kb on + strand at 130.525 kb on + strand at 130.525 kb on + strand at 130.526 kb on - strand at 130.526 kb on - strand at 130.526 kb on - strand at 130.552 kb on + strand at 130.552 kb on + strand at 130.553 kb on - strand at 130.553 kb on - strand at 130.553 kb on - strand at 130.553 kb on - strand at 130.555 kb on - strand at 130.577 kb on + strand at 130.583 kb on + strand at 130.584 kb on - strand at 130.617 kb on + strand at 130.618 kb on - strand at 130.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 128,172 + -0.0 128,184 + +1.0 128,232 - +1.0 128,232 - -0.9 128,232 - -1.5 128,240 + -1.7 128,240 + -0.5 128,241 - +1.0 128,242 + -0.5 128,244 + HMPREF1078_RS07860 0.10 +3.4 128,244 + HMPREF1078_RS07860 0.10 -1.7 128,244 + HMPREF1078_RS07860 0.10 +1.4 128,244 + HMPREF1078_RS07860 0.10 +1.0 128,245 - HMPREF1078_RS07860 0.10 -1.0 128,245 - HMPREF1078_RS07860 0.10 -0.0 128,245 - HMPREF1078_RS07860 0.10 -0.5 128,245 - HMPREF1078_RS07860 0.10 -0.5 128,252 + HMPREF1078_RS07860 0.11 +2.3 128,281 + HMPREF1078_RS07860 0.14 +2.5 128,281 + HMPREF1078_RS07860 0.14 +2.5 128,281 + HMPREF1078_RS07860 0.14 +1.5 128,282 - HMPREF1078_RS07860 0.14 -0.8 128,289 + HMPREF1078_RS07860 0.15 +1.5 128,289 + HMPREF1078_RS07860 0.15 -0.9 128,289 + HMPREF1078_RS07860 0.15 +1.5 128,289 + HMPREF1078_RS07860 0.15 -2.0 128,289 + HMPREF1078_RS07860 0.15 -0.5 128,290 - HMPREF1078_RS07860 0.15 -1.6 128,290 - HMPREF1078_RS07860 0.15 +1.8 128,291 + HMPREF1078_RS07860 0.15 -0.9 128,291 + HMPREF1078_RS07860 0.15 -1.5 128,292 - HMPREF1078_RS07860 0.15 +1.0 128,312 - HMPREF1078_RS07860 0.17 +0.2 128,313 + HMPREF1078_RS07860 0.17 +0.1 128,314 - HMPREF1078_RS07860 0.17 +2.2 128,314 - HMPREF1078_RS07860 0.17 +0.2 128,314 - HMPREF1078_RS07860 0.17 +1.5 128,314 - HMPREF1078_RS07860 0.17 +0.4 128,317 + HMPREF1078_RS07860 0.18 -0.3 128,318 - HMPREF1078_RS07860 0.18 -0.9 128,337 + HMPREF1078_RS07860 0.20 -2.3 128,337 + HMPREF1078_RS07860 0.20 +0.1 128,337 + HMPREF1078_RS07860 0.20 +0.4 128,337 + HMPREF1078_RS07860 0.20 +2.5 128,403 + HMPREF1078_RS07860 0.27 +0.5 128,407 + HMPREF1078_RS07860 0.27 +0.2 128,430 + HMPREF1078_RS07860 0.30 -1.0 128,431 - HMPREF1078_RS07860 0.30 +0.4 128,433 + HMPREF1078_RS07860 0.30 -0.6 128,433 + HMPREF1078_RS07860 0.30 -0.1 128,434 - HMPREF1078_RS07860 0.30 -2.4 128,434 - HMPREF1078_RS07860 0.30 -0.0 128,434 - HMPREF1078_RS07860 0.30 -0.0 128,434 - HMPREF1078_RS07860 0.30 -0.9 128,436 - HMPREF1078_RS07860 0.30 +0.2 128,436 - HMPREF1078_RS07860 0.30 -1.8 128,436 - HMPREF1078_RS07860 0.30 +0.5 128,436 - HMPREF1078_RS07860 0.30 +0.2 128,436 - HMPREF1078_RS07860 0.30 -0.3 128,436 - HMPREF1078_RS07860 0.30 -1.9 128,436 - HMPREF1078_RS07860 0.30 -0.0 128,449 - HMPREF1078_RS07860 0.32 -0.7 128,467 + HMPREF1078_RS07860 0.33 -0.6 128,468 - HMPREF1078_RS07860 0.34 -0.3 128,468 - HMPREF1078_RS07860 0.34 +0.4 128,468 - HMPREF1078_RS07860 0.34 +0.9 128,501 - HMPREF1078_RS07860 0.37 -0.9 128,528 + HMPREF1078_RS07860 0.40 +4.9 128,528 + HMPREF1078_RS07860 0.40 +0.2 128,561 + HMPREF1078_RS07860 0.43 -0.3 128,561 + HMPREF1078_RS07860 0.43 -1.3 128,561 + HMPREF1078_RS07860 0.43 -1.7 128,562 - HMPREF1078_RS07860 0.43 +1.1 128,562 - HMPREF1078_RS07860 0.43 -1.5 128,562 - HMPREF1078_RS07860 0.43 -1.0 128,562 - HMPREF1078_RS07860 0.43 +2.5 128,562 - HMPREF1078_RS07860 0.43 -0.4 128,562 - HMPREF1078_RS07860 0.43 -0.9 128,562 - HMPREF1078_RS07860 0.43 +1.5 128,563 + HMPREF1078_RS07860 0.44 +0.2 128,563 + HMPREF1078_RS07860 0.44 -1.2 128,564 - HMPREF1078_RS07860 0.44 -0.0 128,564 - HMPREF1078_RS07860 0.44 +0.4 128,564 - HMPREF1078_RS07860 0.44 -1.0 128,721 + HMPREF1078_RS07860 0.60 -0.6 128,729 - HMPREF1078_RS07860 0.61 +0.5 128,761 + HMPREF1078_RS07860 0.64 +0.8 128,800 + HMPREF1078_RS07860 0.68 -0.3 128,800 + HMPREF1078_RS07860 0.68 -1.4 128,811 - HMPREF1078_RS07860 0.70 +0.5 128,870 + HMPREF1078_RS07860 0.76 -1.6 128,898 + HMPREF1078_RS07860 0.79 +1.1 128,899 - HMPREF1078_RS07860 0.79 +0.5 129,038 + -0.6 129,039 - -1.7 129,047 - +2.0 129,049 - -0.3 129,073 + +0.1 129,074 - -0.5 129,074 - +1.0 129,074 - -0.6 129,075 + -1.3 129,076 - -0.2 129,076 - +0.5 129,094 + -0.1 129,094 + -1.4 129,112 - +0.4 129,155 + -1.4 129,155 + -0.9 129,158 - -0.6 129,173 + +0.8 129,210 + +0.7 129,210 + +1.7 129,210 + -1.0 129,211 - +2.5 129,227 + +0.5 129,227 + +0.2 129,227 + +0.1 129,227 + +0.5 129,227 + -0.9 129,227 + +2.5 129,228 - -0.0 129,228 - +0.5 129,284 - HMPREF1078_RS07865 0.12 +1.0 129,485 + HMPREF1078_RS07865 0.31 -0.5 129,529 - HMPREF1078_RS07865 0.35 +2.5 129,546 - HMPREF1078_RS07865 0.37 +1.0 129,563 - HMPREF1078_RS07865 0.38 +0.7 129,563 - HMPREF1078_RS07865 0.38 -0.5 129,598 + HMPREF1078_RS07865 0.42 +1.3 129,616 + HMPREF1078_RS07865 0.43 +2.5 129,616 + HMPREF1078_RS07865 0.43 -1.6 129,616 + HMPREF1078_RS07865 0.43 +1.5 129,616 + HMPREF1078_RS07865 0.43 +0.6 129,617 - HMPREF1078_RS07865 0.44 -0.6 129,617 - HMPREF1078_RS07865 0.44 -0.6 129,617 - HMPREF1078_RS07865 0.44 -1.0 129,620 + HMPREF1078_RS07865 0.44 -0.5 129,620 + HMPREF1078_RS07865 0.44 -0.3 129,652 + HMPREF1078_RS07865 0.47 -1.5 129,653 - HMPREF1078_RS07865 0.47 -1.3 129,653 - HMPREF1078_RS07865 0.47 -0.9 129,656 + HMPREF1078_RS07865 0.47 +0.6 129,656 + HMPREF1078_RS07865 0.47 +1.5 129,656 + HMPREF1078_RS07865 0.47 -2.5 129,656 + HMPREF1078_RS07865 0.47 -0.8 129,657 - HMPREF1078_RS07865 0.47 +0.5 129,762 - HMPREF1078_RS07865 0.57 -0.3 129,822 - HMPREF1078_RS07865 0.63 -0.0 129,830 + HMPREF1078_RS07865 0.64 +0.2 129,831 - HMPREF1078_RS07865 0.64 +0.5 129,887 + HMPREF1078_RS07865 0.69 -1.3 129,888 - HMPREF1078_RS07865 0.70 -0.5 129,952 + HMPREF1078_RS07865 0.76 +1.3 129,952 + HMPREF1078_RS07865 0.76 -0.2 129,953 - HMPREF1078_RS07865 0.76 +1.5 129,953 - HMPREF1078_RS07865 0.76 +1.4 130,044 - HMPREF1078_RS07865 0.84 +2.0 130,081 - HMPREF1078_RS07865 0.88 -0.0 130,154 + +0.1 130,154 + +2.3 130,163 + +1.0 130,163 + -1.6 130,163 + +1.8 130,163 + -1.4 130,163 + -1.0 130,164 - +0.5 130,164 - -1.0 130,166 - -1.7 130,167 + -0.3 130,167 + -1.9 130,168 - -1.1 130,168 - +1.2 130,168 - +0.7 130,169 + -2.2 130,169 + -0.1 130,170 - -0.0 130,170 - -0.5 130,170 - -0.9 130,170 - -1.2 130,197 + -0.3 130,197 + -1.3 130,197 + +1.8 130,198 - -1.0 130,198 - +2.0 130,205 + -0.0 130,206 - +1.7 130,208 + +0.7 130,208 + -0.6 130,208 + +1.8 130,218 - +2.8 130,218 - -0.7 130,252 - +1.2 130,252 - +0.8 130,255 - +0.2 130,255 - +0.7 130,293 - -0.5 130,309 + -0.6 130,403 + -1.4 130,410 - +1.0 130,416 + -0.3 130,417 - +3.5 130,481 + -0.8 130,488 - +0.5 130,521 + -1.8 130,522 - +1.5 130,525 + -0.0 130,525 + +0.3 130,525 + -0.0 130,525 + -1.0 130,526 - -0.3 130,526 - -1.0 130,526 - +2.5 130,552 + -0.9 130,552 + -0.9 130,553 - -0.0 130,553 - +0.2 130,553 - -0.0 130,553 - +0.7 130,555 - +2.0 130,577 + -0.5 130,583 + -0.3 130,584 - +0.5 130,617 + +2.3 130,618 - +2.5 130,632 + -1.2
Or see this region's nucleotide sequence