Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07215

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS07210 and HMPREF1078_RS07215 are separated by 89 nucleotidesHMPREF1078_RS07215 and HMPREF1078_RS07220 are separated by 3 nucleotides HMPREF1078_RS07210: HMPREF1078_RS07210 - alanine dehydrogenase, at 864,104 to 865,303 _RS07210 HMPREF1078_RS07215: HMPREF1078_RS07215 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 865,393 to 867,249 _RS07215 HMPREF1078_RS07220: HMPREF1078_RS07220 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 867,253 to 868,269 _RS07220 Position (kb) 865 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 864.436 kb on + strand, within HMPREF1078_RS07210at 864.439 kb on + strand, within HMPREF1078_RS07210at 864.439 kb on + strand, within HMPREF1078_RS07210at 864.524 kb on + strand, within HMPREF1078_RS07210at 864.628 kb on + strand, within HMPREF1078_RS07210at 864.628 kb on + strand, within HMPREF1078_RS07210at 864.775 kb on + strand, within HMPREF1078_RS07210at 864.776 kb on - strand, within HMPREF1078_RS07210at 864.804 kb on + strand, within HMPREF1078_RS07210at 864.896 kb on + strand, within HMPREF1078_RS07210at 864.919 kb on + strand, within HMPREF1078_RS07210at 864.920 kb on - strand, within HMPREF1078_RS07210at 864.935 kb on - strand, within HMPREF1078_RS07210at 864.963 kb on + strand, within HMPREF1078_RS07210at 864.967 kb on + strand, within HMPREF1078_RS07210at 865.100 kb on - strand, within HMPREF1078_RS07210at 865.123 kb on + strand, within HMPREF1078_RS07210at 865.123 kb on + strand, within HMPREF1078_RS07210at 865.211 kb on + strandat 865.211 kb on + strandat 865.212 kb on - strandat 865.212 kb on - strandat 865.218 kb on - strandat 865.285 kb on - strandat 865.286 kb on + strandat 865.287 kb on - strandat 865.339 kb on + strandat 865.381 kb on + strandat 865.383 kb on + strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.387 kb on + strandat 865.387 kb on + strandat 865.387 kb on + strandat 865.387 kb on + strandat 865.388 kb on - strandat 865.390 kb on - strandat 865.392 kb on + strandat 865.573 kb on - strandat 865.580 kb on + strand, within HMPREF1078_RS07215at 865.581 kb on - strand, within HMPREF1078_RS07215at 865.822 kb on - strand, within HMPREF1078_RS07215at 865.887 kb on + strand, within HMPREF1078_RS07215at 865.887 kb on + strand, within HMPREF1078_RS07215at 865.888 kb on - strand, within HMPREF1078_RS07215at 865.894 kb on - strand, within HMPREF1078_RS07215at 866.023 kb on + strand, within HMPREF1078_RS07215at 866.029 kb on + strand, within HMPREF1078_RS07215at 866.029 kb on + strand, within HMPREF1078_RS07215at 866.040 kb on + strand, within HMPREF1078_RS07215at 866.041 kb on - strand, within HMPREF1078_RS07215at 866.118 kb on + strand, within HMPREF1078_RS07215at 866.118 kb on + strand, within HMPREF1078_RS07215at 866.118 kb on + strand, within HMPREF1078_RS07215at 866.119 kb on - strand, within HMPREF1078_RS07215at 866.165 kb on + strand, within HMPREF1078_RS07215at 866.166 kb on - strand, within HMPREF1078_RS07215at 866.232 kb on + strand, within HMPREF1078_RS07215at 866.286 kb on + strand, within HMPREF1078_RS07215at 866.439 kb on + strand, within HMPREF1078_RS07215at 866.583 kb on + strand, within HMPREF1078_RS07215at 866.583 kb on + strand, within HMPREF1078_RS07215at 866.583 kb on + strand, within HMPREF1078_RS07215at 866.584 kb on - strand, within HMPREF1078_RS07215at 866.584 kb on - strand, within HMPREF1078_RS07215at 866.584 kb on - strand, within HMPREF1078_RS07215at 866.584 kb on - strand, within HMPREF1078_RS07215at 866.684 kb on - strand, within HMPREF1078_RS07215at 866.684 kb on - strand, within HMPREF1078_RS07215at 866.684 kb on - strand, within HMPREF1078_RS07215at 866.695 kb on + strand, within HMPREF1078_RS07215at 866.764 kb on - strand, within HMPREF1078_RS07215at 866.829 kb on + strand, within HMPREF1078_RS07215at 866.971 kb on + strand, within HMPREF1078_RS07215at 866.971 kb on + strand, within HMPREF1078_RS07215at 866.971 kb on + strand, within HMPREF1078_RS07215at 866.972 kb on - strand, within HMPREF1078_RS07215at 867.088 kb on + strandat 867.136 kb on + strandat 867.304 kb on + strandat 867.304 kb on + strandat 867.304 kb on + strandat 867.304 kb on + strandat 867.305 kb on - strandat 867.308 kb on + strandat 867.308 kb on + strandat 867.309 kb on - strandat 867.309 kb on - strandat 867.375 kb on - strand, within HMPREF1078_RS07220at 867.390 kb on + strand, within HMPREF1078_RS07220at 867.390 kb on + strand, within HMPREF1078_RS07220at 867.394 kb on - strand, within HMPREF1078_RS07220at 867.394 kb on - strand, within HMPREF1078_RS07220at 867.394 kb on - strand, within HMPREF1078_RS07220at 867.402 kb on + strand, within HMPREF1078_RS07220at 867.403 kb on - strand, within HMPREF1078_RS07220at 867.436 kb on + strand, within HMPREF1078_RS07220at 867.437 kb on - strand, within HMPREF1078_RS07220at 867.437 kb on - strand, within HMPREF1078_RS07220at 867.439 kb on + strand, within HMPREF1078_RS07220at 867.439 kb on + strand, within HMPREF1078_RS07220at 867.440 kb on - strand, within HMPREF1078_RS07220at 867.451 kb on + strand, within HMPREF1078_RS07220at 867.452 kb on - strand, within HMPREF1078_RS07220at 867.452 kb on - strand, within HMPREF1078_RS07220at 867.452 kb on - strand, within HMPREF1078_RS07220at 867.463 kb on - strand, within HMPREF1078_RS07220at 867.635 kb on + strand, within HMPREF1078_RS07220at 867.635 kb on + strand, within HMPREF1078_RS07220at 867.636 kb on - strand, within HMPREF1078_RS07220at 867.636 kb on - strand, within HMPREF1078_RS07220at 867.636 kb on - strand, within HMPREF1078_RS07220at 867.636 kb on - strand, within HMPREF1078_RS07220at 867.636 kb on - strand, within HMPREF1078_RS07220at 867.637 kb on + strand, within HMPREF1078_RS07220at 867.637 kb on + strand, within HMPREF1078_RS07220at 867.638 kb on - strand, within HMPREF1078_RS07220at 867.638 kb on - strand, within HMPREF1078_RS07220at 867.638 kb on - strand, within HMPREF1078_RS07220at 867.658 kb on + strand, within HMPREF1078_RS07220at 867.832 kb on - strand, within HMPREF1078_RS07220at 867.886 kb on - strand, within HMPREF1078_RS07220at 868.037 kb on + strand, within HMPREF1078_RS07220at 868.038 kb on + strand, within HMPREF1078_RS07220at 868.059 kb on - strand, within HMPREF1078_RS07220at 868.120 kb on - strand, within HMPREF1078_RS07220at 868.165 kb on + strand, within HMPREF1078_RS07220at 868.165 kb on + strand, within HMPREF1078_RS07220at 868.165 kb on + strand, within HMPREF1078_RS07220at 868.166 kb on - strand, within HMPREF1078_RS07220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
remove
864,436 + HMPREF1078_RS07210 0.28 -3.4
864,439 + HMPREF1078_RS07210 0.28 +1.2
864,439 + HMPREF1078_RS07210 0.28 -0.8
864,524 + HMPREF1078_RS07210 0.35 -1.2
864,628 + HMPREF1078_RS07210 0.44 -2.0
864,628 + HMPREF1078_RS07210 0.44 -2.9
864,775 + HMPREF1078_RS07210 0.56 +1.2
864,776 - HMPREF1078_RS07210 0.56 -2.9
864,804 + HMPREF1078_RS07210 0.58 -2.1
864,896 + HMPREF1078_RS07210 0.66 -1.9
864,919 + HMPREF1078_RS07210 0.68 +0.6
864,920 - HMPREF1078_RS07210 0.68 -0.2
864,935 - HMPREF1078_RS07210 0.69 -1.6
864,963 + HMPREF1078_RS07210 0.72 -1.7
864,967 + HMPREF1078_RS07210 0.72 -1.5
865,100 - HMPREF1078_RS07210 0.83 -1.6
865,123 + HMPREF1078_RS07210 0.85 -0.5
865,123 + HMPREF1078_RS07210 0.85 -0.8
865,211 + -0.8
865,211 + -0.8
865,212 - -0.8
865,212 - -2.7
865,218 - +1.2
865,285 - +0.9
865,286 + -1.7
865,287 - -0.8
865,339 + -1.0
865,381 + -2.2
865,383 + -3.6
865,384 - -2.3
865,384 - -0.4
865,384 - -2.0
865,384 - -1.2
865,387 + -3.3
865,387 + +0.6
865,387 + -1.2
865,387 + -1.7
865,388 - -2.1
865,390 - -0.8
865,392 + -3.4
865,573 - -2.5
865,580 + HMPREF1078_RS07215 0.10 +0.6
865,581 - HMPREF1078_RS07215 0.10 -1.8
865,822 - HMPREF1078_RS07215 0.23 -1.0
865,887 + HMPREF1078_RS07215 0.27 -0.2
865,887 + HMPREF1078_RS07215 0.27 -2.4
865,888 - HMPREF1078_RS07215 0.27 -2.7
865,894 - HMPREF1078_RS07215 0.27 -0.6
866,023 + HMPREF1078_RS07215 0.34 -1.5
866,029 + HMPREF1078_RS07215 0.34 -1.0
866,029 + HMPREF1078_RS07215 0.34 -1.7
866,040 + HMPREF1078_RS07215 0.35 -1.8
866,041 - HMPREF1078_RS07215 0.35 +2.2
866,118 + HMPREF1078_RS07215 0.39 +0.6
866,118 + HMPREF1078_RS07215 0.39 -3.3
866,118 + HMPREF1078_RS07215 0.39 -1.3
866,119 - HMPREF1078_RS07215 0.39 -1.8
866,165 + HMPREF1078_RS07215 0.42 -2.0
866,166 - HMPREF1078_RS07215 0.42 -2.0
866,232 + HMPREF1078_RS07215 0.45 -0.8
866,286 + HMPREF1078_RS07215 0.48 +1.2
866,439 + HMPREF1078_RS07215 0.56 -2.5
866,583 + HMPREF1078_RS07215 0.64 -2.6
866,583 + HMPREF1078_RS07215 0.64 -3.1
866,583 + HMPREF1078_RS07215 0.64 -0.6
866,584 - HMPREF1078_RS07215 0.64 -1.0
866,584 - HMPREF1078_RS07215 0.64 -1.3
866,584 - HMPREF1078_RS07215 0.64 +0.6
866,584 - HMPREF1078_RS07215 0.64 -2.4
866,684 - HMPREF1078_RS07215 0.70 -1.2
866,684 - HMPREF1078_RS07215 0.70 -2.5
866,684 - HMPREF1078_RS07215 0.70 -0.6
866,695 + HMPREF1078_RS07215 0.70 -0.4
866,764 - HMPREF1078_RS07215 0.74 -2.6
866,829 + HMPREF1078_RS07215 0.77 +2.2
866,971 + HMPREF1078_RS07215 0.85 -1.0
866,971 + HMPREF1078_RS07215 0.85 -1.0
866,971 + HMPREF1078_RS07215 0.85 -0.8
866,972 - HMPREF1078_RS07215 0.85 -0.6
867,088 + -1.6
867,136 + -1.9
867,304 + -2.9
867,304 + +2.2
867,304 + -1.5
867,304 + -1.3
867,305 - -2.5
867,308 + -2.4
867,308 + +0.2
867,309 - -0.4
867,309 - -0.2
867,375 - HMPREF1078_RS07220 0.12 -1.6
867,390 + HMPREF1078_RS07220 0.13 -2.0
867,390 + HMPREF1078_RS07220 0.13 -1.6
867,394 - HMPREF1078_RS07220 0.14 +0.6
867,394 - HMPREF1078_RS07220 0.14 -1.0
867,394 - HMPREF1078_RS07220 0.14 +0.6
867,402 + HMPREF1078_RS07220 0.15 -1.0
867,403 - HMPREF1078_RS07220 0.15 -2.2
867,436 + HMPREF1078_RS07220 0.18 -0.4
867,437 - HMPREF1078_RS07220 0.18 +2.2
867,437 - HMPREF1078_RS07220 0.18 -2.2
867,439 + HMPREF1078_RS07220 0.18 +1.2
867,439 + HMPREF1078_RS07220 0.18 -0.8
867,440 - HMPREF1078_RS07220 0.18 -2.8
867,451 + HMPREF1078_RS07220 0.19 +0.6
867,452 - HMPREF1078_RS07220 0.20 -1.6
867,452 - HMPREF1078_RS07220 0.20 +0.2
867,452 - HMPREF1078_RS07220 0.20 -0.4
867,463 - HMPREF1078_RS07220 0.21 -0.8
867,635 + HMPREF1078_RS07220 0.38 -1.6
867,635 + HMPREF1078_RS07220 0.38 +0.6
867,636 - HMPREF1078_RS07220 0.38 -3.0
867,636 - HMPREF1078_RS07220 0.38 -1.3
867,636 - HMPREF1078_RS07220 0.38 +1.2
867,636 - HMPREF1078_RS07220 0.38 +1.2
867,636 - HMPREF1078_RS07220 0.38 -0.6
867,637 + HMPREF1078_RS07220 0.38 -2.3
867,637 + HMPREF1078_RS07220 0.38 -2.3
867,638 - HMPREF1078_RS07220 0.38 +0.6
867,638 - HMPREF1078_RS07220 0.38 -1.3
867,638 - HMPREF1078_RS07220 0.38 +2.2
867,658 + HMPREF1078_RS07220 0.40 -2.2
867,832 - HMPREF1078_RS07220 0.57 -2.5
867,886 - HMPREF1078_RS07220 0.62 -2.3
868,037 + HMPREF1078_RS07220 0.77 -0.6
868,038 + HMPREF1078_RS07220 0.77 -3.3
868,059 - HMPREF1078_RS07220 0.79 -2.6
868,120 - HMPREF1078_RS07220 0.85 +1.2
868,165 + HMPREF1078_RS07220 0.90 -3.2
868,165 + HMPREF1078_RS07220 0.90 -0.6
868,165 + HMPREF1078_RS07220 0.90 -1.2
868,166 - HMPREF1078_RS07220 0.90 -2.2

Or see this region's nucleotide sequence