Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06740

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06735 and HMPREF1078_RS06740 are separated by 152 nucleotidesHMPREF1078_RS06740 and HMPREF1078_RS06745 overlap by 4 nucleotidesHMPREF1078_RS06745 and HMPREF1078_RS06750 overlap by 11 nucleotides HMPREF1078_RS06735: HMPREF1078_RS06735 - Gfo/Idh/MocA family oxidoreductase, at 751,186 to 752,622 _RS06735 HMPREF1078_RS06740: HMPREF1078_RS06740 - DUF4271 domain-containing protein, at 752,775 to 753,503 _RS06740 HMPREF1078_RS06745: HMPREF1078_RS06745 - uroporphyrinogen-III synthase, at 753,500 to 754,267 _RS06745 HMPREF1078_RS06750: HMPREF1078_RS06750 - ribonuclease P protein component, at 754,257 to 754,643 _RS06750 Position (kb) 752 753 754Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 751.776 kb on - strand, within HMPREF1078_RS06735at 751.810 kb on - strand, within HMPREF1078_RS06735at 751.906 kb on + strand, within HMPREF1078_RS06735at 751.907 kb on - strand, within HMPREF1078_RS06735at 751.918 kb on + strand, within HMPREF1078_RS06735at 751.946 kb on - strand, within HMPREF1078_RS06735at 752.036 kb on + strand, within HMPREF1078_RS06735at 752.062 kb on - strand, within HMPREF1078_RS06735at 752.136 kb on + strand, within HMPREF1078_RS06735at 752.139 kb on + strand, within HMPREF1078_RS06735at 752.160 kb on + strand, within HMPREF1078_RS06735at 752.163 kb on + strand, within HMPREF1078_RS06735at 752.163 kb on + strand, within HMPREF1078_RS06735at 752.163 kb on + strand, within HMPREF1078_RS06735at 752.185 kb on + strand, within HMPREF1078_RS06735at 752.185 kb on + strand, within HMPREF1078_RS06735at 752.311 kb on - strand, within HMPREF1078_RS06735at 752.395 kb on + strand, within HMPREF1078_RS06735at 752.408 kb on + strand, within HMPREF1078_RS06735at 752.452 kb on - strand, within HMPREF1078_RS06735at 752.609 kb on - strandat 752.609 kb on - strandat 752.611 kb on + strandat 752.611 kb on + strandat 752.611 kb on + strandat 752.612 kb on - strandat 752.616 kb on + strandat 752.633 kb on - strandat 752.646 kb on - strandat 752.724 kb on - strandat 752.747 kb on - strandat 752.760 kb on + strandat 752.760 kb on + strandat 752.782 kb on + strandat 752.783 kb on - strandat 752.783 kb on - strandat 752.793 kb on + strandat 752.794 kb on - strandat 752.794 kb on - strandat 752.794 kb on - strandat 752.864 kb on + strand, within HMPREF1078_RS06740at 752.954 kb on - strand, within HMPREF1078_RS06740at 752.965 kb on + strand, within HMPREF1078_RS06740at 752.965 kb on + strand, within HMPREF1078_RS06740at 753.056 kb on - strand, within HMPREF1078_RS06740at 753.057 kb on + strand, within HMPREF1078_RS06740at 753.094 kb on + strand, within HMPREF1078_RS06740at 753.191 kb on + strand, within HMPREF1078_RS06740at 753.196 kb on - strand, within HMPREF1078_RS06740at 753.197 kb on + strand, within HMPREF1078_RS06740at 753.216 kb on + strand, within HMPREF1078_RS06740at 753.224 kb on + strand, within HMPREF1078_RS06740at 753.225 kb on - strand, within HMPREF1078_RS06740at 753.225 kb on - strand, within HMPREF1078_RS06740at 753.225 kb on - strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.289 kb on - strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.293 kb on - strand, within HMPREF1078_RS06740at 753.293 kb on - strand, within HMPREF1078_RS06740at 753.296 kb on + strand, within HMPREF1078_RS06740at 753.296 kb on + strand, within HMPREF1078_RS06740at 753.297 kb on - strand, within HMPREF1078_RS06740at 753.298 kb on + strand, within HMPREF1078_RS06740at 753.317 kb on + strand, within HMPREF1078_RS06740at 753.317 kb on + strand, within HMPREF1078_RS06740at 753.324 kb on + strand, within HMPREF1078_RS06740at 753.362 kb on - strand, within HMPREF1078_RS06740at 753.396 kb on + strand, within HMPREF1078_RS06740at 753.396 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.408 kb on + strand, within HMPREF1078_RS06740at 753.447 kb on + strandat 753.455 kb on + strandat 753.462 kb on + strandat 753.462 kb on + strandat 753.462 kb on + strandat 753.578 kb on + strand, within HMPREF1078_RS06745at 753.610 kb on + strand, within HMPREF1078_RS06745at 753.615 kb on + strand, within HMPREF1078_RS06745at 753.615 kb on + strand, within HMPREF1078_RS06745at 753.631 kb on + strand, within HMPREF1078_RS06745at 753.670 kb on + strand, within HMPREF1078_RS06745at 753.761 kb on + strand, within HMPREF1078_RS06745at 753.803 kb on + strand, within HMPREF1078_RS06745at 753.805 kb on + strand, within HMPREF1078_RS06745at 753.812 kb on + strand, within HMPREF1078_RS06745at 753.812 kb on + strand, within HMPREF1078_RS06745at 753.823 kb on + strand, within HMPREF1078_RS06745at 753.823 kb on + strand, within HMPREF1078_RS06745at 753.865 kb on + strand, within HMPREF1078_RS06745at 753.896 kb on + strand, within HMPREF1078_RS06745at 753.922 kb on + strand, within HMPREF1078_RS06745at 753.922 kb on + strand, within HMPREF1078_RS06745at 753.922 kb on + strand, within HMPREF1078_RS06745at 753.923 kb on - strand, within HMPREF1078_RS06745at 753.940 kb on + strand, within HMPREF1078_RS06745at 753.940 kb on + strand, within HMPREF1078_RS06745at 753.979 kb on + strand, within HMPREF1078_RS06745at 753.979 kb on + strand, within HMPREF1078_RS06745at 753.979 kb on + strand, within HMPREF1078_RS06745at 753.983 kb on + strand, within HMPREF1078_RS06745at 754.009 kb on + strand, within HMPREF1078_RS06745at 754.033 kb on + strand, within HMPREF1078_RS06745at 754.033 kb on + strand, within HMPREF1078_RS06745at 754.033 kb on + strand, within HMPREF1078_RS06745at 754.105 kb on + strand, within HMPREF1078_RS06745at 754.105 kb on + strand, within HMPREF1078_RS06745at 754.105 kb on + strand, within HMPREF1078_RS06745at 754.107 kb on + strand, within HMPREF1078_RS06745at 754.223 kb on + strandat 754.243 kb on + strandat 754.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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751,776 - HMPREF1078_RS06735 0.41 -1.6
751,810 - HMPREF1078_RS06735 0.43 -3.2
751,906 + HMPREF1078_RS06735 0.50 -0.3
751,907 - HMPREF1078_RS06735 0.50 +0.4
751,918 + HMPREF1078_RS06735 0.51 -1.8
751,946 - HMPREF1078_RS06735 0.53 +2.2
752,036 + HMPREF1078_RS06735 0.59 -0.2
752,062 - HMPREF1078_RS06735 0.61 -2.2
752,136 + HMPREF1078_RS06735 0.66 +0.7
752,139 + HMPREF1078_RS06735 0.66 +3.8
752,160 + HMPREF1078_RS06735 0.68 +0.2
752,163 + HMPREF1078_RS06735 0.68 -1.4
752,163 + HMPREF1078_RS06735 0.68 -0.4
752,163 + HMPREF1078_RS06735 0.68 +0.6
752,185 + HMPREF1078_RS06735 0.70 -0.8
752,185 + HMPREF1078_RS06735 0.70 -0.6
752,311 - HMPREF1078_RS06735 0.78 +2.2
752,395 + HMPREF1078_RS06735 0.84 -3.0
752,408 + HMPREF1078_RS06735 0.85 -1.1
752,452 - HMPREF1078_RS06735 0.88 -1.4
752,609 - +0.6
752,609 - +1.2
752,611 + -2.4
752,611 + +0.4
752,611 + -1.6
752,612 - -1.6
752,616 + -0.2
752,633 - -0.6
752,646 - +0.2
752,724 - -2.2
752,747 - -1.9
752,760 + +0.6
752,760 + -0.9
752,782 + -1.4
752,783 - -3.0
752,783 - -1.7
752,793 + -1.8
752,794 - -1.9
752,794 - -2.2
752,794 - -1.7
752,864 + HMPREF1078_RS06740 0.12 -2.4
752,954 - HMPREF1078_RS06740 0.25 +0.6
752,965 + HMPREF1078_RS06740 0.26 -1.7
752,965 + HMPREF1078_RS06740 0.26 -1.0
753,056 - HMPREF1078_RS06740 0.39 -0.4
753,057 + HMPREF1078_RS06740 0.39 -2.4
753,094 + HMPREF1078_RS06740 0.44 -3.1
753,191 + HMPREF1078_RS06740 0.57 -2.0
753,196 - HMPREF1078_RS06740 0.58 -1.2
753,197 + HMPREF1078_RS06740 0.58 +0.2
753,216 + HMPREF1078_RS06740 0.60 -0.6
753,224 + HMPREF1078_RS06740 0.62 +1.2
753,225 - HMPREF1078_RS06740 0.62 -3.3
753,225 - HMPREF1078_RS06740 0.62 -2.3
753,225 - HMPREF1078_RS06740 0.62 +1.2
753,288 + HMPREF1078_RS06740 0.70 -2.1
753,288 + HMPREF1078_RS06740 0.70 -2.0
753,288 + HMPREF1078_RS06740 0.70 -1.0
753,288 + HMPREF1078_RS06740 0.70 -3.3
753,289 - HMPREF1078_RS06740 0.71 -2.8
753,292 + HMPREF1078_RS06740 0.71 -1.4
753,292 + HMPREF1078_RS06740 0.71 -1.9
753,292 + HMPREF1078_RS06740 0.71 -1.6
753,292 + HMPREF1078_RS06740 0.71 -2.7
753,293 - HMPREF1078_RS06740 0.71 -1.9
753,293 - HMPREF1078_RS06740 0.71 -0.9
753,296 + HMPREF1078_RS06740 0.71 -0.2
753,296 + HMPREF1078_RS06740 0.71 -1.9
753,297 - HMPREF1078_RS06740 0.72 -2.0
753,298 + HMPREF1078_RS06740 0.72 -1.5
753,317 + HMPREF1078_RS06740 0.74 -2.0
753,317 + HMPREF1078_RS06740 0.74 -0.8
753,324 + HMPREF1078_RS06740 0.75 -1.0
753,362 - HMPREF1078_RS06740 0.81 +2.2
753,396 + HMPREF1078_RS06740 0.85 -4.6
753,396 + HMPREF1078_RS06740 0.85 +0.2
753,400 + HMPREF1078_RS06740 0.86 -4.4
753,400 + HMPREF1078_RS06740 0.86 -1.7
753,400 + HMPREF1078_RS06740 0.86 -1.0
753,400 + HMPREF1078_RS06740 0.86 -3.4
753,400 + HMPREF1078_RS06740 0.86 -3.3
753,400 + HMPREF1078_RS06740 0.86 -0.2
753,408 + HMPREF1078_RS06740 0.87 -2.6
753,447 + +2.2
753,455 + -2.6
753,462 + -1.6
753,462 + -4.5
753,462 + -1.5
753,578 + HMPREF1078_RS06745 0.10 +1.2
753,610 + HMPREF1078_RS06745 0.14 -0.4
753,615 + HMPREF1078_RS06745 0.15 -1.0
753,615 + HMPREF1078_RS06745 0.15 +1.2
753,631 + HMPREF1078_RS06745 0.17 -0.2
753,670 + HMPREF1078_RS06745 0.22 +0.6
753,761 + HMPREF1078_RS06745 0.34 +1.2
753,803 + HMPREF1078_RS06745 0.39 +2.2
753,805 + HMPREF1078_RS06745 0.40 +2.2
753,812 + HMPREF1078_RS06745 0.41 -2.3
753,812 + HMPREF1078_RS06745 0.41 +1.2
753,823 + HMPREF1078_RS06745 0.42 -0.8
753,823 + HMPREF1078_RS06745 0.42 -1.4
753,865 + HMPREF1078_RS06745 0.48 +1.2
753,896 + HMPREF1078_RS06745 0.52 +1.2
753,922 + HMPREF1078_RS06745 0.55 +0.6
753,922 + HMPREF1078_RS06745 0.55 +0.2
753,922 + HMPREF1078_RS06745 0.55 -0.4
753,923 - HMPREF1078_RS06745 0.55 -0.8
753,940 + HMPREF1078_RS06745 0.57 +0.2
753,940 + HMPREF1078_RS06745 0.57 -1.2
753,979 + HMPREF1078_RS06745 0.62 -0.4
753,979 + HMPREF1078_RS06745 0.62 -0.4
753,979 + HMPREF1078_RS06745 0.62 -1.4
753,983 + HMPREF1078_RS06745 0.63 -0.2
754,009 + HMPREF1078_RS06745 0.66 -0.2
754,033 + HMPREF1078_RS06745 0.69 +1.2
754,033 + HMPREF1078_RS06745 0.69 -0.4
754,033 + HMPREF1078_RS06745 0.69 -1.2
754,105 + HMPREF1078_RS06745 0.79 +1.2
754,105 + HMPREF1078_RS06745 0.79 +2.2
754,105 + HMPREF1078_RS06745 0.79 -0.6
754,107 + HMPREF1078_RS06745 0.79 -0.4
754,223 + -1.4
754,243 + -1.4
754,246 + -0.2

Or see this region's nucleotide sequence