Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06010

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06000 and HMPREF1078_RS06005 are separated by 5 nucleotidesHMPREF1078_RS06005 and HMPREF1078_RS06010 are separated by 63 nucleotidesHMPREF1078_RS06010 and HMPREF1078_RS06015 are separated by 125 nucleotides HMPREF1078_RS06000: HMPREF1078_RS06000 - SIS domain-containing protein, at 539,824 to 540,441 _RS06000 HMPREF1078_RS06005: HMPREF1078_RS06005 - carbohydrate kinase, at 540,447 to 541,376 _RS06005 HMPREF1078_RS06010: HMPREF1078_RS06010 - tyrosine-protein phosphatase, at 541,440 to 542,519 _RS06010 HMPREF1078_RS06015: HMPREF1078_RS06015 - DEAD/DEAH box helicase, at 542,645 to 544,411 _RS06015 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 540.571 kb on + strand, within HMPREF1078_RS06005at 540.571 kb on + strand, within HMPREF1078_RS06005at 540.572 kb on - strand, within HMPREF1078_RS06005at 540.572 kb on - strand, within HMPREF1078_RS06005at 540.572 kb on - strand, within HMPREF1078_RS06005at 540.572 kb on - strand, within HMPREF1078_RS06005at 540.623 kb on - strand, within HMPREF1078_RS06005at 540.741 kb on + strand, within HMPREF1078_RS06005at 540.742 kb on - strand, within HMPREF1078_RS06005at 540.810 kb on + strand, within HMPREF1078_RS06005at 540.820 kb on - strand, within HMPREF1078_RS06005at 540.822 kb on + strand, within HMPREF1078_RS06005at 540.870 kb on + strand, within HMPREF1078_RS06005at 540.900 kb on + strand, within HMPREF1078_RS06005at 540.901 kb on - strand, within HMPREF1078_RS06005at 540.901 kb on - strand, within HMPREF1078_RS06005at 540.988 kb on + strand, within HMPREF1078_RS06005at 541.058 kb on + strand, within HMPREF1078_RS06005at 541.278 kb on - strand, within HMPREF1078_RS06005at 541.359 kb on + strandat 541.375 kb on - strandat 541.397 kb on - strandat 541.406 kb on + strandat 541.407 kb on - strandat 541.407 kb on - strandat 541.407 kb on - strandat 541.445 kb on + strandat 541.446 kb on - strandat 541.454 kb on + strandat 541.454 kb on + strandat 541.454 kb on + strandat 541.454 kb on + strandat 541.454 kb on + strandat 541.454 kb on + strandat 541.455 kb on - strandat 541.455 kb on - strandat 541.498 kb on + strandat 541.543 kb on + strandat 541.543 kb on + strandat 541.544 kb on - strandat 541.571 kb on + strand, within HMPREF1078_RS06010at 541.571 kb on + strand, within HMPREF1078_RS06010at 541.574 kb on + strand, within HMPREF1078_RS06010at 541.574 kb on + strand, within HMPREF1078_RS06010at 541.625 kb on - strand, within HMPREF1078_RS06010at 541.669 kb on - strand, within HMPREF1078_RS06010at 541.698 kb on + strand, within HMPREF1078_RS06010at 541.698 kb on + strand, within HMPREF1078_RS06010at 541.698 kb on + strand, within HMPREF1078_RS06010at 541.698 kb on + strand, within HMPREF1078_RS06010at 541.698 kb on + strand, within HMPREF1078_RS06010at 541.728 kb on + strand, within HMPREF1078_RS06010at 541.755 kb on + strand, within HMPREF1078_RS06010at 541.816 kb on + strand, within HMPREF1078_RS06010at 541.816 kb on + strand, within HMPREF1078_RS06010at 541.817 kb on - strand, within HMPREF1078_RS06010at 541.817 kb on - strand, within HMPREF1078_RS06010at 541.817 kb on - strand, within HMPREF1078_RS06010at 541.847 kb on + strand, within HMPREF1078_RS06010at 541.848 kb on - strand, within HMPREF1078_RS06010at 541.848 kb on - strand, within HMPREF1078_RS06010at 541.848 kb on - strand, within HMPREF1078_RS06010at 542.026 kb on + strand, within HMPREF1078_RS06010at 542.094 kb on + strand, within HMPREF1078_RS06010at 542.094 kb on + strand, within HMPREF1078_RS06010at 542.094 kb on + strand, within HMPREF1078_RS06010at 542.095 kb on - strand, within HMPREF1078_RS06010at 542.096 kb on + strand, within HMPREF1078_RS06010at 542.096 kb on + strand, within HMPREF1078_RS06010at 542.109 kb on + strand, within HMPREF1078_RS06010at 542.109 kb on + strand, within HMPREF1078_RS06010at 542.109 kb on + strand, within HMPREF1078_RS06010at 542.110 kb on - strand, within HMPREF1078_RS06010at 542.110 kb on - strand, within HMPREF1078_RS06010at 542.110 kb on - strand, within HMPREF1078_RS06010at 542.112 kb on - strand, within HMPREF1078_RS06010at 542.118 kb on + strand, within HMPREF1078_RS06010at 542.287 kb on - strand, within HMPREF1078_RS06010at 542.289 kb on - strand, within HMPREF1078_RS06010at 542.309 kb on - strand, within HMPREF1078_RS06010at 542.309 kb on - strand, within HMPREF1078_RS06010at 542.328 kb on + strand, within HMPREF1078_RS06010at 542.328 kb on + strand, within HMPREF1078_RS06010at 542.331 kb on - strand, within HMPREF1078_RS06010at 542.433 kb on + strandat 542.451 kb on + strandat 542.493 kb on - strandat 542.497 kb on + strandat 542.498 kb on - strandat 542.504 kb on + strandat 542.505 kb on - strandat 542.509 kb on + strandat 542.509 kb on + strandat 542.509 kb on + strandat 542.534 kb on - strandat 542.569 kb on + strandat 542.570 kb on - strandat 542.571 kb on + strandat 542.571 kb on + strandat 542.571 kb on + strandat 542.571 kb on + strandat 542.571 kb on + strandat 542.571 kb on + strandat 542.571 kb on + strandat 542.573 kb on + strandat 542.573 kb on + strandat 542.573 kb on + strandat 542.573 kb on + strandat 542.573 kb on + strandat 542.573 kb on + strandat 542.574 kb on - strandat 542.577 kb on + strandat 542.577 kb on + strandat 542.577 kb on + strandat 542.577 kb on + strandat 542.578 kb on - strandat 542.579 kb on + strandat 542.651 kb on + strandat 542.716 kb on - strandat 542.791 kb on + strandat 542.791 kb on + strandat 542.796 kb on - strandat 542.796 kb on - strandat 542.796 kb on - strandat 542.796 kb on - strandat 542.814 kb on + strandat 542.814 kb on + strandat 542.815 kb on - strandat 542.835 kb on + strand, within HMPREF1078_RS06015at 542.841 kb on + strand, within HMPREF1078_RS06015at 542.876 kb on + strand, within HMPREF1078_RS06015at 542.878 kb on + strand, within HMPREF1078_RS06015at 542.878 kb on + strand, within HMPREF1078_RS06015at 543.012 kb on + strand, within HMPREF1078_RS06015at 543.249 kb on - strand, within HMPREF1078_RS06015at 543.249 kb on - strand, within HMPREF1078_RS06015at 543.252 kb on - strand, within HMPREF1078_RS06015at 543.253 kb on + strand, within HMPREF1078_RS06015at 543.253 kb on + strand, within HMPREF1078_RS06015at 543.253 kb on + strand, within HMPREF1078_RS06015at 543.258 kb on + strand, within HMPREF1078_RS06015at 543.317 kb on + strand, within HMPREF1078_RS06015at 543.386 kb on + strand, within HMPREF1078_RS06015at 543.387 kb on - strand, within HMPREF1078_RS06015

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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540,571 + HMPREF1078_RS06005 0.13 +1.3
540,571 + HMPREF1078_RS06005 0.13 -0.8
540,572 - HMPREF1078_RS06005 0.13 -0.4
540,572 - HMPREF1078_RS06005 0.13 -0.8
540,572 - HMPREF1078_RS06005 0.13 +1.8
540,572 - HMPREF1078_RS06005 0.13 -0.5
540,623 - HMPREF1078_RS06005 0.19 +0.3
540,741 + HMPREF1078_RS06005 0.32 +1.4
540,742 - HMPREF1078_RS06005 0.32 -1.5
540,810 + HMPREF1078_RS06005 0.39 -1.7
540,820 - HMPREF1078_RS06005 0.40 -0.2
540,822 + HMPREF1078_RS06005 0.40 +0.4
540,870 + HMPREF1078_RS06005 0.45 -0.6
540,900 + HMPREF1078_RS06005 0.49 -0.7
540,901 - HMPREF1078_RS06005 0.49 +0.6
540,901 - HMPREF1078_RS06005 0.49 -0.2
540,988 + HMPREF1078_RS06005 0.58 +5.4
541,058 + HMPREF1078_RS06005 0.66 -1.7
541,278 - HMPREF1078_RS06005 0.89 -0.9
541,359 + -1.6
541,375 - -1.4
541,397 - -2.6
541,406 + +0.6
541,407 - -1.5
541,407 - -0.0
541,407 - -1.5
541,445 + -1.3
541,446 - -0.2
541,454 + -1.8
541,454 + -1.8
541,454 + -2.3
541,454 + -2.8
541,454 + -3.3
541,454 + -0.8
541,455 - -0.4
541,455 - -1.5
541,498 + -1.9
541,543 + -1.8
541,543 + -2.2
541,544 - -2.1
541,571 + HMPREF1078_RS06010 0.12 -2.3
541,571 + HMPREF1078_RS06010 0.12 -3.4
541,574 + HMPREF1078_RS06010 0.12 +0.1
541,574 + HMPREF1078_RS06010 0.12 -1.1
541,625 - HMPREF1078_RS06010 0.17 -1.5
541,669 - HMPREF1078_RS06010 0.21 -2.4
541,698 + HMPREF1078_RS06010 0.24 -1.3
541,698 + HMPREF1078_RS06010 0.24 -2.9
541,698 + HMPREF1078_RS06010 0.24 -2.4
541,698 + HMPREF1078_RS06010 0.24 -0.2
541,698 + HMPREF1078_RS06010 0.24 -3.3
541,728 + HMPREF1078_RS06010 0.27 -3.3
541,755 + HMPREF1078_RS06010 0.29 -2.6
541,816 + HMPREF1078_RS06010 0.35 -2.8
541,816 + HMPREF1078_RS06010 0.35 -2.6
541,817 - HMPREF1078_RS06010 0.35 -0.2
541,817 - HMPREF1078_RS06010 0.35 +0.6
541,817 - HMPREF1078_RS06010 0.35 -1.2
541,847 + HMPREF1078_RS06010 0.38 -2.6
541,848 - HMPREF1078_RS06010 0.38 -2.8
541,848 - HMPREF1078_RS06010 0.38 -1.2
541,848 - HMPREF1078_RS06010 0.38 -3.2
542,026 + HMPREF1078_RS06010 0.54 -2.7
542,094 + HMPREF1078_RS06010 0.61 -2.7
542,094 + HMPREF1078_RS06010 0.61 -3.1
542,094 + HMPREF1078_RS06010 0.61 -1.6
542,095 - HMPREF1078_RS06010 0.61 -1.4
542,096 + HMPREF1078_RS06010 0.61 -3.2
542,096 + HMPREF1078_RS06010 0.61 -2.2
542,109 + HMPREF1078_RS06010 0.62 -2.1
542,109 + HMPREF1078_RS06010 0.62 -0.4
542,109 + HMPREF1078_RS06010 0.62 -2.4
542,110 - HMPREF1078_RS06010 0.62 +1.2
542,110 - HMPREF1078_RS06010 0.62 +0.2
542,110 - HMPREF1078_RS06010 0.62 -1.6
542,112 - HMPREF1078_RS06010 0.62 -1.3
542,118 + HMPREF1078_RS06010 0.63 -0.2
542,287 - HMPREF1078_RS06010 0.78 -2.5
542,289 - HMPREF1078_RS06010 0.79 -2.9
542,309 - HMPREF1078_RS06010 0.80 -1.7
542,309 - HMPREF1078_RS06010 0.80 -1.1
542,328 + HMPREF1078_RS06010 0.82 -1.5
542,328 + HMPREF1078_RS06010 0.82 -1.8
542,331 - HMPREF1078_RS06010 0.82 -1.9
542,433 + -1.5
542,451 + -3.4
542,493 - -1.8
542,497 + -1.5
542,498 - +0.2
542,504 + -3.7
542,505 - -3.1
542,509 + -1.4
542,509 + +0.0
542,509 + -3.1
542,534 - +0.7
542,569 + -1.5
542,570 - -0.2
542,571 + -1.9
542,571 + -1.4
542,571 + +1.6
542,571 + +0.2
542,571 + -0.8
542,571 + -0.2
542,571 + +1.2
542,573 + -1.1
542,573 + -1.1
542,573 + +0.7
542,573 + -2.0
542,573 + -0.2
542,573 + -0.1
542,574 - -2.2
542,577 + -1.5
542,577 + -0.4
542,577 + +1.6
542,577 + +2.2
542,578 - +2.2
542,579 + +0.9
542,651 + +1.2
542,716 - +0.6
542,791 + -1.6
542,791 + -0.2
542,796 - +2.2
542,796 - +2.2
542,796 - -0.4
542,796 - -1.4
542,814 + +0.6
542,814 + -0.8
542,815 - +1.6
542,835 + HMPREF1078_RS06015 0.11 +1.0
542,841 + HMPREF1078_RS06015 0.11 -1.5
542,876 + HMPREF1078_RS06015 0.13 +2.2
542,878 + HMPREF1078_RS06015 0.13 -1.0
542,878 + HMPREF1078_RS06015 0.13 -0.4
543,012 + HMPREF1078_RS06015 0.21 -2.6
543,249 - HMPREF1078_RS06015 0.34 -0.2
543,249 - HMPREF1078_RS06015 0.34 -1.0
543,252 - HMPREF1078_RS06015 0.34 -0.4
543,253 + HMPREF1078_RS06015 0.34 -0.4
543,253 + HMPREF1078_RS06015 0.34 -0.6
543,253 + HMPREF1078_RS06015 0.34 -2.0
543,258 + HMPREF1078_RS06015 0.35 -1.0
543,317 + HMPREF1078_RS06015 0.38 +1.8
543,386 + HMPREF1078_RS06015 0.42 -2.2
543,387 - HMPREF1078_RS06015 0.42 -0.6

Or see this region's nucleotide sequence