Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05865 and HMPREF1078_RS05870 are separated by 158 nucleotides HMPREF1078_RS05870 and HMPREF1078_RS05875 are separated by 139 nucleotides HMPREF1078_RS05875 and HMPREF1078_RS05880 are separated by 1 nucleotides HMPREF1078_RS05880 and HMPREF1078_RS05885 are separated by 79 nucleotides
HMPREF1078_RS05865: HMPREF1078_RS05865 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 501,143 to 503,644
_RS05865
HMPREF1078_RS05870: HMPREF1078_RS05870 - PglZ domain-containing protein, at 503,803 to 505,353
_RS05870
HMPREF1078_RS05875: HMPREF1078_RS05875 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 505,493 to 505,912
_RS05875
HMPREF1078_RS05880: HMPREF1078_RS05880 - immunity 17 family protein, at 505,914 to 506,129
_RS05880
HMPREF1078_RS05885: HMPREF1078_RS05885 - ribonuclease R, at 506,209 to 508,389
_RS05885
Position (kb) 503
504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.807 kb on + strand, within HMPREF1078_RS05865 at 502.839 kb on + strand, within HMPREF1078_RS05865 at 502.865 kb on + strand, within HMPREF1078_RS05865 at 502.866 kb on - strand, within HMPREF1078_RS05865 at 502.965 kb on + strand, within HMPREF1078_RS05865 at 503.042 kb on - strand, within HMPREF1078_RS05865 at 503.124 kb on - strand, within HMPREF1078_RS05865 at 503.226 kb on + strand, within HMPREF1078_RS05865 at 503.227 kb on - strand, within HMPREF1078_RS05865 at 503.257 kb on - strand, within HMPREF1078_RS05865 at 503.302 kb on + strand, within HMPREF1078_RS05865 at 503.302 kb on + strand, within HMPREF1078_RS05865 at 503.303 kb on - strand, within HMPREF1078_RS05865 at 503.335 kb on - strand, within HMPREF1078_RS05865 at 503.568 kb on - strand at 503.631 kb on - strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.644 kb on + strand at 503.645 kb on - strand at 503.650 kb on + strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.651 kb on - strand at 503.666 kb on - strand at 503.667 kb on + strand at 503.673 kb on - strand at 503.684 kb on - strand at 503.730 kb on + strand at 503.731 kb on - strand at 503.796 kb on + strand at 503.802 kb on + strand at 503.802 kb on + strand at 503.938 kb on - strand at 504.150 kb on + strand, within HMPREF1078_RS05870 at 504.176 kb on + strand, within HMPREF1078_RS05870 at 504.176 kb on + strand, within HMPREF1078_RS05870 at 504.177 kb on - strand, within HMPREF1078_RS05870 at 504.177 kb on - strand, within HMPREF1078_RS05870 at 504.182 kb on + strand, within HMPREF1078_RS05870 at 504.293 kb on - strand, within HMPREF1078_RS05870 at 504.494 kb on + strand, within HMPREF1078_RS05870 at 504.494 kb on + strand, within HMPREF1078_RS05870 at 504.495 kb on - strand, within HMPREF1078_RS05870 at 504.562 kb on + strand, within HMPREF1078_RS05870 at 504.563 kb on - strand, within HMPREF1078_RS05870 at 504.566 kb on - strand, within HMPREF1078_RS05870 at 504.616 kb on + strand, within HMPREF1078_RS05870 at 504.768 kb on + strand, within HMPREF1078_RS05870 at 504.769 kb on - strand, within HMPREF1078_RS05870 at 504.769 kb on - strand, within HMPREF1078_RS05870 at 504.788 kb on + strand, within HMPREF1078_RS05870 at 504.788 kb on + strand, within HMPREF1078_RS05870 at 504.788 kb on + strand, within HMPREF1078_RS05870 at 504.802 kb on + strand, within HMPREF1078_RS05870 at 504.803 kb on - strand, within HMPREF1078_RS05870 at 504.864 kb on - strand, within HMPREF1078_RS05870 at 504.879 kb on + strand, within HMPREF1078_RS05870 at 504.880 kb on - strand, within HMPREF1078_RS05870 at 504.943 kb on + strand, within HMPREF1078_RS05870 at 505.002 kb on + strand, within HMPREF1078_RS05870 at 505.002 kb on + strand, within HMPREF1078_RS05870 at 505.020 kb on + strand, within HMPREF1078_RS05870 at 505.021 kb on - strand, within HMPREF1078_RS05870 at 505.021 kb on - strand, within HMPREF1078_RS05870 at 505.079 kb on + strand, within HMPREF1078_RS05870 at 505.079 kb on + strand, within HMPREF1078_RS05870 at 505.093 kb on - strand, within HMPREF1078_RS05870 at 505.098 kb on + strand, within HMPREF1078_RS05870 at 505.135 kb on + strand, within HMPREF1078_RS05870 at 505.141 kb on - strand, within HMPREF1078_RS05870 at 505.210 kb on + strand at 505.211 kb on - strand at 505.212 kb on + strand at 505.212 kb on + strand at 505.212 kb on + strand at 505.213 kb on - strand at 505.213 kb on - strand at 505.255 kb on + strand at 505.255 kb on + strand at 505.255 kb on + strand at 505.256 kb on - strand at 505.256 kb on - strand at 505.257 kb on + strand at 505.257 kb on + strand at 505.265 kb on - strand at 505.274 kb on - strand at 505.279 kb on - strand at 505.284 kb on + strand at 505.284 kb on + strand at 505.302 kb on + strand at 505.302 kb on + strand at 505.302 kb on + strand at 505.303 kb on - strand at 505.369 kb on + strand at 505.390 kb on + strand at 505.390 kb on + strand at 505.899 kb on + strand at 505.929 kb on + strand at 505.942 kb on + strand, within HMPREF1078_RS05880 at 506.042 kb on - strand, within HMPREF1078_RS05880 at 506.068 kb on - strand, within HMPREF1078_RS05880 at 506.115 kb on - strand at 506.130 kb on + strand at 506.164 kb on - strand at 506.264 kb on - strand at 506.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 502,807 + HMPREF1078_RS05865 0.67 +0.6 502,839 + HMPREF1078_RS05865 0.68 -0.4 502,865 + HMPREF1078_RS05865 0.69 +0.1 502,866 - HMPREF1078_RS05865 0.69 -0.8 502,965 + HMPREF1078_RS05865 0.73 -0.1 503,042 - HMPREF1078_RS05865 0.76 -0.5 503,124 - HMPREF1078_RS05865 0.79 -2.6 503,226 + HMPREF1078_RS05865 0.83 +1.6 503,227 - HMPREF1078_RS05865 0.83 +0.5 503,257 - HMPREF1078_RS05865 0.84 -0.4 503,302 + HMPREF1078_RS05865 0.86 +1.2 503,302 + HMPREF1078_RS05865 0.86 -0.8 503,303 - HMPREF1078_RS05865 0.86 +0.2 503,335 - HMPREF1078_RS05865 0.88 +1.2 503,568 - -1.4 503,631 - -0.8 503,644 + -1.3 503,644 + -2.9 503,644 + +2.2 503,644 + +0.6 503,644 + +0.5 503,645 - +1.2 503,650 + -1.0 503,651 - -0.9 503,651 - -0.5 503,651 - -2.2 503,651 - -0.3 503,666 - -0.1 503,667 + -0.2 503,673 - +0.3 503,684 - -1.6 503,730 + -1.0 503,731 - -2.1 503,796 + -1.6 503,802 + -1.4 503,802 + -2.4 503,938 - -0.8 504,150 + HMPREF1078_RS05870 0.22 -1.3 504,176 + HMPREF1078_RS05870 0.24 -1.3 504,176 + HMPREF1078_RS05870 0.24 +2.2 504,177 - HMPREF1078_RS05870 0.24 -1.6 504,177 - HMPREF1078_RS05870 0.24 -2.2 504,182 + HMPREF1078_RS05870 0.24 +2.2 504,293 - HMPREF1078_RS05870 0.32 -1.8 504,494 + HMPREF1078_RS05870 0.45 -1.5 504,494 + HMPREF1078_RS05870 0.45 +2.2 504,495 - HMPREF1078_RS05870 0.45 -0.8 504,562 + HMPREF1078_RS05870 0.49 -0.6 504,563 - HMPREF1078_RS05870 0.49 +2.2 504,566 - HMPREF1078_RS05870 0.49 -1.4 504,616 + HMPREF1078_RS05870 0.52 -2.7 504,768 + HMPREF1078_RS05870 0.62 -0.4 504,769 - HMPREF1078_RS05870 0.62 -1.1 504,769 - HMPREF1078_RS05870 0.62 -0.4 504,788 + HMPREF1078_RS05870 0.64 +0.2 504,788 + HMPREF1078_RS05870 0.64 -1.1 504,788 + HMPREF1078_RS05870 0.64 -0.6 504,802 + HMPREF1078_RS05870 0.64 -2.0 504,803 - HMPREF1078_RS05870 0.64 +0.2 504,864 - HMPREF1078_RS05870 0.68 -1.5 504,879 + HMPREF1078_RS05870 0.69 -2.3 504,880 - HMPREF1078_RS05870 0.69 -1.4 504,943 + HMPREF1078_RS05870 0.74 -2.1 505,002 + HMPREF1078_RS05870 0.77 +1.2 505,002 + HMPREF1078_RS05870 0.77 -1.7 505,020 + HMPREF1078_RS05870 0.78 +0.2 505,021 - HMPREF1078_RS05870 0.79 -0.1 505,021 - HMPREF1078_RS05870 0.79 +0.6 505,079 + HMPREF1078_RS05870 0.82 +0.2 505,079 + HMPREF1078_RS05870 0.82 -0.6 505,093 - HMPREF1078_RS05870 0.83 -0.6 505,098 + HMPREF1078_RS05870 0.83 -0.6 505,135 + HMPREF1078_RS05870 0.86 -2.0 505,141 - HMPREF1078_RS05870 0.86 -1.0 505,210 + -3.2 505,211 - +0.6 505,212 + -0.4 505,212 + +0.2 505,212 + +2.2 505,213 - -2.1 505,213 - -1.9 505,255 + -1.0 505,255 + -0.8 505,255 + +1.2 505,256 - -2.4 505,256 - +0.6 505,257 + -1.0 505,257 + -3.0 505,265 - -1.3 505,274 - +1.2 505,279 - -1.3 505,284 + -0.1 505,284 + +1.2 505,302 + -0.1 505,302 + -0.1 505,302 + -2.8 505,303 - +1.2 505,369 + +1.2 505,390 + +0.8 505,390 + +0.4 505,899 + -0.4 505,929 + +1.7 505,942 + HMPREF1078_RS05880 0.13 -0.7 506,042 - HMPREF1078_RS05880 0.59 -2.4 506,068 - HMPREF1078_RS05880 0.71 -0.2 506,115 - +1.3 506,130 + -1.1 506,164 - +0.2 506,264 - -1.4 506,345 + -1.4
Or see this region's nucleotide sequence