Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05685 and HMPREF1078_RS05690 are separated by 153 nucleotides HMPREF1078_RS05690 and HMPREF1078_RS05695 are separated by 108 nucleotides HMPREF1078_RS05695 and HMPREF1078_RS05700 are separated by 65 nucleotides
HMPREF1078_RS05685: HMPREF1078_RS05685 - FecR family protein, at 446,935 to 447,930
_RS05685
HMPREF1078_RS05690: HMPREF1078_RS05690 - RNA polymerase sigma-70 factor, at 448,084 to 448,638
_RS05690
HMPREF1078_RS05695: HMPREF1078_RS05695 - transcriptional repressor, at 448,747 to 449,175
_RS05695
HMPREF1078_RS05700: HMPREF1078_RS05700 - heavy metal translocating P-type ATPase, at 449,241 to 451,175
_RS05700
Position (kb) 448
449 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 447.149 kb on + strand, within HMPREF1078_RS05685 at 447.170 kb on + strand, within HMPREF1078_RS05685 at 447.205 kb on - strand, within HMPREF1078_RS05685 at 447.205 kb on - strand, within HMPREF1078_RS05685 at 447.274 kb on + strand, within HMPREF1078_RS05685 at 447.275 kb on - strand, within HMPREF1078_RS05685 at 447.340 kb on + strand, within HMPREF1078_RS05685 at 447.341 kb on - strand, within HMPREF1078_RS05685 at 447.345 kb on + strand, within HMPREF1078_RS05685 at 447.346 kb on - strand, within HMPREF1078_RS05685 at 447.346 kb on - strand, within HMPREF1078_RS05685 at 447.394 kb on - strand, within HMPREF1078_RS05685 at 447.583 kb on + strand, within HMPREF1078_RS05685 at 447.583 kb on + strand, within HMPREF1078_RS05685 at 447.583 kb on + strand, within HMPREF1078_RS05685 at 447.602 kb on - strand, within HMPREF1078_RS05685 at 447.655 kb on + strand, within HMPREF1078_RS05685 at 447.684 kb on - strand, within HMPREF1078_RS05685 at 447.721 kb on + strand, within HMPREF1078_RS05685 at 447.721 kb on + strand, within HMPREF1078_RS05685 at 447.804 kb on + strand, within HMPREF1078_RS05685 at 447.804 kb on + strand, within HMPREF1078_RS05685 at 447.805 kb on - strand, within HMPREF1078_RS05685 at 447.805 kb on - strand, within HMPREF1078_RS05685 at 447.805 kb on - strand, within HMPREF1078_RS05685 at 447.898 kb on + strand at 447.898 kb on + strand at 447.910 kb on + strand at 447.913 kb on - strand at 447.945 kb on + strand at 447.945 kb on + strand at 447.986 kb on + strand at 448.078 kb on + strand at 448.200 kb on + strand, within HMPREF1078_RS05690 at 448.385 kb on + strand, within HMPREF1078_RS05690 at 448.556 kb on + strand, within HMPREF1078_RS05690 at 448.720 kb on + strand at 448.790 kb on + strand, within HMPREF1078_RS05695 at 448.843 kb on + strand, within HMPREF1078_RS05695 at 448.914 kb on - strand, within HMPREF1078_RS05695 at 448.976 kb on - strand, within HMPREF1078_RS05695 at 449.026 kb on - strand, within HMPREF1078_RS05695 at 449.064 kb on + strand, within HMPREF1078_RS05695 at 449.065 kb on - strand, within HMPREF1078_RS05695 at 449.197 kb on + strand at 449.285 kb on + strand at 449.286 kb on - strand at 449.286 kb on - strand at 449.286 kb on - strand at 449.360 kb on - strand at 449.572 kb on - strand, within HMPREF1078_RS05700
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 447,149 + HMPREF1078_RS05685 0.21 -0.6 447,170 + HMPREF1078_RS05685 0.24 -1.0 447,205 - HMPREF1078_RS05685 0.27 -0.6 447,205 - HMPREF1078_RS05685 0.27 -1.6 447,274 + HMPREF1078_RS05685 0.34 -0.9 447,275 - HMPREF1078_RS05685 0.34 -0.8 447,340 + HMPREF1078_RS05685 0.41 -0.7 447,341 - HMPREF1078_RS05685 0.41 -2.1 447,345 + HMPREF1078_RS05685 0.41 +0.2 447,346 - HMPREF1078_RS05685 0.41 -2.1 447,346 - HMPREF1078_RS05685 0.41 -1.7 447,394 - HMPREF1078_RS05685 0.46 -1.5 447,583 + HMPREF1078_RS05685 0.65 -1.6 447,583 + HMPREF1078_RS05685 0.65 +0.0 447,583 + HMPREF1078_RS05685 0.65 -1.5 447,602 - HMPREF1078_RS05685 0.67 +0.6 447,655 + HMPREF1078_RS05685 0.72 -1.0 447,684 - HMPREF1078_RS05685 0.75 +0.6 447,721 + HMPREF1078_RS05685 0.79 +1.9 447,721 + HMPREF1078_RS05685 0.79 +0.6 447,804 + HMPREF1078_RS05685 0.87 -0.8 447,804 + HMPREF1078_RS05685 0.87 -0.7 447,805 - HMPREF1078_RS05685 0.87 -0.6 447,805 - HMPREF1078_RS05685 0.87 +2.2 447,805 - HMPREF1078_RS05685 0.87 -2.1 447,898 + -1.7 447,898 + +0.8 447,910 + +5.0 447,913 - -0.8 447,945 + +1.4 447,945 + -2.7 447,986 + +0.1 448,078 + -1.8 448,200 + HMPREF1078_RS05690 0.21 -1.4 448,385 + HMPREF1078_RS05690 0.54 -1.3 448,556 + HMPREF1078_RS05690 0.85 -0.7 448,720 + -1.1 448,790 + HMPREF1078_RS05695 0.10 -0.8 448,843 + HMPREF1078_RS05695 0.22 -1.9 448,914 - HMPREF1078_RS05695 0.39 +1.0 448,976 - HMPREF1078_RS05695 0.53 +2.2 449,026 - HMPREF1078_RS05695 0.65 -1.7 449,064 + HMPREF1078_RS05695 0.74 -1.0 449,065 - HMPREF1078_RS05695 0.74 +0.2 449,197 + -1.6 449,285 + +0.2 449,286 - +0.6 449,286 - +0.2 449,286 - +0.5 449,360 - -0.1 449,572 - HMPREF1078_RS05700 0.17 -0.1
Or see this region's nucleotide sequence