Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05610

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS05605 and HMPREF1078_RS05610 are separated by 40 nucleotidesHMPREF1078_RS05610 and HMPREF1078_RS05615 are separated by 82 nucleotides HMPREF1078_RS05605: HMPREF1078_RS05605 - sugar kinase, at 420,158 to 421,201 _RS05605 HMPREF1078_RS05610: HMPREF1078_RS05610 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 421,242 to 421,910 _RS05610 HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396 _RS05615 Position (kb) 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 420.250 kb on + strandat 420.271 kb on + strand, within HMPREF1078_RS05605at 420.272 kb on - strand, within HMPREF1078_RS05605at 420.296 kb on + strand, within HMPREF1078_RS05605at 420.297 kb on - strand, within HMPREF1078_RS05605at 420.297 kb on - strand, within HMPREF1078_RS05605at 420.371 kb on - strand, within HMPREF1078_RS05605at 420.381 kb on + strand, within HMPREF1078_RS05605at 420.516 kb on + strand, within HMPREF1078_RS05605at 420.569 kb on - strand, within HMPREF1078_RS05605at 420.658 kb on + strand, within HMPREF1078_RS05605at 420.663 kb on - strand, within HMPREF1078_RS05605at 420.684 kb on - strand, within HMPREF1078_RS05605at 420.735 kb on + strand, within HMPREF1078_RS05605at 420.736 kb on - strand, within HMPREF1078_RS05605at 420.768 kb on + strand, within HMPREF1078_RS05605at 420.819 kb on + strand, within HMPREF1078_RS05605at 420.925 kb on + strand, within HMPREF1078_RS05605at 420.925 kb on + strand, within HMPREF1078_RS05605at 420.926 kb on - strand, within HMPREF1078_RS05605at 420.985 kb on + strand, within HMPREF1078_RS05605at 420.991 kb on + strand, within HMPREF1078_RS05605at 421.005 kb on + strand, within HMPREF1078_RS05605at 421.005 kb on + strand, within HMPREF1078_RS05605at 421.040 kb on + strand, within HMPREF1078_RS05605at 421.041 kb on - strand, within HMPREF1078_RS05605at 421.041 kb on - strand, within HMPREF1078_RS05605at 421.055 kb on - strand, within HMPREF1078_RS05605at 421.056 kb on - strand, within HMPREF1078_RS05605at 421.134 kb on - strandat 421.298 kb on - strandat 421.412 kb on - strand, within HMPREF1078_RS05610at 421.476 kb on - strand, within HMPREF1078_RS05610at 421.476 kb on - strand, within HMPREF1078_RS05610at 421.503 kb on + strand, within HMPREF1078_RS05610at 421.569 kb on - strand, within HMPREF1078_RS05610at 421.587 kb on + strand, within HMPREF1078_RS05610at 421.588 kb on - strand, within HMPREF1078_RS05610at 421.589 kb on + strand, within HMPREF1078_RS05610at 421.589 kb on + strand, within HMPREF1078_RS05610at 421.590 kb on - strand, within HMPREF1078_RS05610at 421.590 kb on - strand, within HMPREF1078_RS05610at 421.590 kb on - strand, within HMPREF1078_RS05610at 421.637 kb on - strand, within HMPREF1078_RS05610at 421.676 kb on - strand, within HMPREF1078_RS05610at 421.724 kb on + strand, within HMPREF1078_RS05610at 421.724 kb on + strand, within HMPREF1078_RS05610at 421.724 kb on + strand, within HMPREF1078_RS05610at 421.725 kb on - strand, within HMPREF1078_RS05610at 421.725 kb on - strand, within HMPREF1078_RS05610at 421.747 kb on + strand, within HMPREF1078_RS05610at 422.051 kb on - strandat 422.126 kb on - strandat 422.172 kb on + strand, within HMPREF1078_RS05615at 422.173 kb on - strand, within HMPREF1078_RS05615at 422.272 kb on + strand, within HMPREF1078_RS05615at 422.272 kb on + strand, within HMPREF1078_RS05615at 422.273 kb on - strand, within HMPREF1078_RS05615at 422.291 kb on + strand, within HMPREF1078_RS05615at 422.319 kb on + strand, within HMPREF1078_RS05615at 422.322 kb on + strand, within HMPREF1078_RS05615at 422.371 kb on + strand, within HMPREF1078_RS05615at 422.433 kb on + strand, within HMPREF1078_RS05615at 422.434 kb on - strand, within HMPREF1078_RS05615at 422.450 kb on + strand, within HMPREF1078_RS05615at 422.450 kb on + strand, within HMPREF1078_RS05615at 422.490 kb on + strand, within HMPREF1078_RS05615at 422.491 kb on - strand, within HMPREF1078_RS05615at 422.575 kb on - strand, within HMPREF1078_RS05615at 422.575 kb on - strand, within HMPREF1078_RS05615at 422.578 kb on + strand, within HMPREF1078_RS05615at 422.578 kb on + strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.579 kb on - strand, within HMPREF1078_RS05615at 422.711 kb on + strand, within HMPREF1078_RS05615at 422.711 kb on + strand, within HMPREF1078_RS05615at 422.716 kb on - strand, within HMPREF1078_RS05615at 422.716 kb on - strand, within HMPREF1078_RS05615at 422.720 kb on - strand, within HMPREF1078_RS05615at 422.722 kb on + strand, within HMPREF1078_RS05615at 422.736 kb on + strand, within HMPREF1078_RS05615at 422.760 kb on - strand, within HMPREF1078_RS05615at 422.760 kb on - strand, within HMPREF1078_RS05615at 422.775 kb on + strand, within HMPREF1078_RS05615at 422.775 kb on + strand, within HMPREF1078_RS05615at 422.831 kb on - strand, within HMPREF1078_RS05615at 422.867 kb on + strand, within HMPREF1078_RS05615at 422.867 kb on + strand, within HMPREF1078_RS05615

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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420,250 + -2.4
420,271 + HMPREF1078_RS05605 0.11 -1.9
420,272 - HMPREF1078_RS05605 0.11 -0.8
420,296 + HMPREF1078_RS05605 0.13 -1.5
420,297 - HMPREF1078_RS05605 0.13 -2.8
420,297 - HMPREF1078_RS05605 0.13 -3.0
420,371 - HMPREF1078_RS05605 0.20 -2.3
420,381 + HMPREF1078_RS05605 0.21 -3.3
420,516 + HMPREF1078_RS05605 0.34 -1.4
420,569 - HMPREF1078_RS05605 0.39 -0.8
420,658 + HMPREF1078_RS05605 0.48 -0.8
420,663 - HMPREF1078_RS05605 0.48 -3.0
420,684 - HMPREF1078_RS05605 0.50 -1.8
420,735 + HMPREF1078_RS05605 0.55 -2.3
420,736 - HMPREF1078_RS05605 0.55 -1.9
420,768 + HMPREF1078_RS05605 0.58 -3.0
420,819 + HMPREF1078_RS05605 0.63 -3.4
420,925 + HMPREF1078_RS05605 0.73 +0.6
420,925 + HMPREF1078_RS05605 0.73 -1.7
420,926 - HMPREF1078_RS05605 0.74 -1.7
420,985 + HMPREF1078_RS05605 0.79 -1.0
420,991 + HMPREF1078_RS05605 0.80 +1.2
421,005 + HMPREF1078_RS05605 0.81 -2.7
421,005 + HMPREF1078_RS05605 0.81 -0.6
421,040 + HMPREF1078_RS05605 0.84 -1.0
421,041 - HMPREF1078_RS05605 0.85 -1.9
421,041 - HMPREF1078_RS05605 0.85 -0.6
421,055 - HMPREF1078_RS05605 0.86 -1.6
421,056 - HMPREF1078_RS05605 0.86 -0.1
421,134 - -1.3
421,298 - -2.0
421,412 - HMPREF1078_RS05610 0.25 -0.7
421,476 - HMPREF1078_RS05610 0.35 -1.4
421,476 - HMPREF1078_RS05610 0.35 +0.2
421,503 + HMPREF1078_RS05610 0.39 +0.6
421,569 - HMPREF1078_RS05610 0.49 -1.3
421,587 + HMPREF1078_RS05610 0.52 -2.5
421,588 - HMPREF1078_RS05610 0.52 -2.5
421,589 + HMPREF1078_RS05610 0.52 -3.6
421,589 + HMPREF1078_RS05610 0.52 -1.5
421,590 - HMPREF1078_RS05610 0.52 -3.2
421,590 - HMPREF1078_RS05610 0.52 -2.1
421,590 - HMPREF1078_RS05610 0.52 -0.6
421,637 - HMPREF1078_RS05610 0.59 -4.1
421,676 - HMPREF1078_RS05610 0.65 -3.5
421,724 + HMPREF1078_RS05610 0.72 -2.3
421,724 + HMPREF1078_RS05610 0.72 -1.7
421,724 + HMPREF1078_RS05610 0.72 -3.3
421,725 - HMPREF1078_RS05610 0.72 -1.5
421,725 - HMPREF1078_RS05610 0.72 -0.1
421,747 + HMPREF1078_RS05610 0.75 +0.2
422,051 - -3.5
422,126 - -2.6
422,172 + HMPREF1078_RS05615 0.13 -0.5
422,173 - HMPREF1078_RS05615 0.13 -2.6
422,272 + HMPREF1078_RS05615 0.20 -2.6
422,272 + HMPREF1078_RS05615 0.20 +0.6
422,273 - HMPREF1078_RS05615 0.20 -1.0
422,291 + HMPREF1078_RS05615 0.21 -3.8
422,319 + HMPREF1078_RS05615 0.23 -1.6
422,322 + HMPREF1078_RS05615 0.23 -2.6
422,371 + HMPREF1078_RS05615 0.27 -1.1
422,433 + HMPREF1078_RS05615 0.31 -2.4
422,434 - HMPREF1078_RS05615 0.31 -2.4
422,450 + HMPREF1078_RS05615 0.33 -2.0
422,450 + HMPREF1078_RS05615 0.33 -1.1
422,490 + HMPREF1078_RS05615 0.35 -1.8
422,491 - HMPREF1078_RS05615 0.35 -1.6
422,575 - HMPREF1078_RS05615 0.41 -0.8
422,575 - HMPREF1078_RS05615 0.41 -2.9
422,578 + HMPREF1078_RS05615 0.42 +0.6
422,578 + HMPREF1078_RS05615 0.42 -2.5
422,579 - HMPREF1078_RS05615 0.42 -2.1
422,579 - HMPREF1078_RS05615 0.42 -2.3
422,579 - HMPREF1078_RS05615 0.42 -0.3
422,579 - HMPREF1078_RS05615 0.42 -2.7
422,579 - HMPREF1078_RS05615 0.42 -1.3
422,579 - HMPREF1078_RS05615 0.42 -2.6
422,579 - HMPREF1078_RS05615 0.42 -2.9
422,711 + HMPREF1078_RS05615 0.51 -1.7
422,711 + HMPREF1078_RS05615 0.51 -2.3
422,716 - HMPREF1078_RS05615 0.51 +0.2
422,716 - HMPREF1078_RS05615 0.51 -2.7
422,720 - HMPREF1078_RS05615 0.52 -2.5
422,722 + HMPREF1078_RS05615 0.52 -2.1
422,736 + HMPREF1078_RS05615 0.53 -0.8
422,760 - HMPREF1078_RS05615 0.55 +0.6
422,760 - HMPREF1078_RS05615 0.55 -2.0
422,775 + HMPREF1078_RS05615 0.56 -1.5
422,775 + HMPREF1078_RS05615 0.56 -2.3
422,831 - HMPREF1078_RS05615 0.60 -0.8
422,867 + HMPREF1078_RS05615 0.62 -1.6
422,867 + HMPREF1078_RS05615 0.62 -3.3

Or see this region's nucleotide sequence