Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05600 and HMPREF1078_RS05605 are separated by 80 nucleotides HMPREF1078_RS05605 and HMPREF1078_RS05610 are separated by 40 nucleotides HMPREF1078_RS05610 and HMPREF1078_RS05615 are separated by 82 nucleotides
HMPREF1078_RS05600: HMPREF1078_RS05600 - sulfatase-like hydrolase/transferase, at 418,635 to 420,077
_RS05600
HMPREF1078_RS05605: HMPREF1078_RS05605 - sugar kinase, at 420,158 to 421,201
_RS05605
HMPREF1078_RS05610: HMPREF1078_RS05610 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 421,242 to 421,910
_RS05610
HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396
_RS05615
Position (kb) 420
421
422 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 419.191 kb on - strand, within HMPREF1078_RS05600 at 419.196 kb on + strand, within HMPREF1078_RS05600 at 419.197 kb on - strand, within HMPREF1078_RS05600 at 419.197 kb on - strand, within HMPREF1078_RS05600 at 419.220 kb on - strand, within HMPREF1078_RS05600 at 419.246 kb on + strand, within HMPREF1078_RS05600 at 419.264 kb on + strand, within HMPREF1078_RS05600 at 419.295 kb on + strand, within HMPREF1078_RS05600 at 419.295 kb on + strand, within HMPREF1078_RS05600 at 419.297 kb on + strand, within HMPREF1078_RS05600 at 419.297 kb on + strand, within HMPREF1078_RS05600 at 419.297 kb on + strand, within HMPREF1078_RS05600 at 419.297 kb on + strand, within HMPREF1078_RS05600 at 419.298 kb on - strand, within HMPREF1078_RS05600 at 419.335 kb on - strand, within HMPREF1078_RS05600 at 419.419 kb on + strand, within HMPREF1078_RS05600 at 419.488 kb on - strand, within HMPREF1078_RS05600 at 419.518 kb on + strand, within HMPREF1078_RS05600 at 419.556 kb on + strand, within HMPREF1078_RS05600 at 419.557 kb on - strand, within HMPREF1078_RS05600 at 419.575 kb on + strand, within HMPREF1078_RS05600 at 419.575 kb on + strand, within HMPREF1078_RS05600 at 419.636 kb on - strand, within HMPREF1078_RS05600 at 419.710 kb on + strand, within HMPREF1078_RS05600 at 419.710 kb on + strand, within HMPREF1078_RS05600 at 419.710 kb on + strand, within HMPREF1078_RS05600 at 419.710 kb on + strand, within HMPREF1078_RS05600 at 419.710 kb on + strand, within HMPREF1078_RS05600 at 419.711 kb on - strand, within HMPREF1078_RS05600 at 419.711 kb on - strand, within HMPREF1078_RS05600 at 419.711 kb on - strand, within HMPREF1078_RS05600 at 419.711 kb on - strand, within HMPREF1078_RS05600 at 419.715 kb on + strand, within HMPREF1078_RS05600 at 419.722 kb on + strand, within HMPREF1078_RS05600 at 419.728 kb on + strand, within HMPREF1078_RS05600 at 419.829 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.833 kb on + strand, within HMPREF1078_RS05600 at 419.834 kb on - strand, within HMPREF1078_RS05600 at 419.834 kb on - strand, within HMPREF1078_RS05600 at 419.834 kb on - strand, within HMPREF1078_RS05600 at 419.835 kb on + strand, within HMPREF1078_RS05600 at 419.835 kb on + strand, within HMPREF1078_RS05600 at 419.836 kb on - strand, within HMPREF1078_RS05600 at 419.838 kb on + strand, within HMPREF1078_RS05600 at 419.844 kb on + strand, within HMPREF1078_RS05600 at 419.845 kb on - strand, within HMPREF1078_RS05600 at 419.845 kb on - strand, within HMPREF1078_RS05600 at 419.846 kb on + strand, within HMPREF1078_RS05600 at 419.846 kb on + strand, within HMPREF1078_RS05600 at 419.846 kb on + strand, within HMPREF1078_RS05600 at 419.846 kb on + strand, within HMPREF1078_RS05600 at 419.927 kb on - strand, within HMPREF1078_RS05600 at 420.044 kb on + strand at 420.045 kb on - strand at 420.045 kb on - strand at 420.045 kb on - strand at 420.105 kb on - strand at 420.105 kb on - strand at 420.144 kb on + strand at 420.147 kb on - strand at 420.215 kb on + strand at 420.238 kb on + strand at 420.250 kb on + strand at 420.271 kb on + strand, within HMPREF1078_RS05605 at 420.272 kb on - strand, within HMPREF1078_RS05605 at 420.296 kb on + strand, within HMPREF1078_RS05605 at 420.297 kb on - strand, within HMPREF1078_RS05605 at 420.297 kb on - strand, within HMPREF1078_RS05605 at 420.371 kb on - strand, within HMPREF1078_RS05605 at 420.381 kb on + strand, within HMPREF1078_RS05605 at 420.516 kb on + strand, within HMPREF1078_RS05605 at 420.569 kb on - strand, within HMPREF1078_RS05605 at 420.658 kb on + strand, within HMPREF1078_RS05605 at 420.663 kb on - strand, within HMPREF1078_RS05605 at 420.684 kb on - strand, within HMPREF1078_RS05605 at 420.735 kb on + strand, within HMPREF1078_RS05605 at 420.736 kb on - strand, within HMPREF1078_RS05605 at 420.768 kb on + strand, within HMPREF1078_RS05605 at 420.819 kb on + strand, within HMPREF1078_RS05605 at 420.925 kb on + strand, within HMPREF1078_RS05605 at 420.925 kb on + strand, within HMPREF1078_RS05605 at 420.926 kb on - strand, within HMPREF1078_RS05605 at 420.985 kb on + strand, within HMPREF1078_RS05605 at 420.991 kb on + strand, within HMPREF1078_RS05605 at 421.005 kb on + strand, within HMPREF1078_RS05605 at 421.005 kb on + strand, within HMPREF1078_RS05605 at 421.040 kb on + strand, within HMPREF1078_RS05605 at 421.041 kb on - strand, within HMPREF1078_RS05605 at 421.041 kb on - strand, within HMPREF1078_RS05605 at 421.055 kb on - strand, within HMPREF1078_RS05605 at 421.056 kb on - strand, within HMPREF1078_RS05605 at 421.134 kb on - strand at 421.298 kb on - strand at 421.412 kb on - strand, within HMPREF1078_RS05610 at 421.476 kb on - strand, within HMPREF1078_RS05610 at 421.476 kb on - strand, within HMPREF1078_RS05610 at 421.503 kb on + strand, within HMPREF1078_RS05610 at 421.569 kb on - strand, within HMPREF1078_RS05610 at 421.587 kb on + strand, within HMPREF1078_RS05610 at 421.588 kb on - strand, within HMPREF1078_RS05610 at 421.589 kb on + strand, within HMPREF1078_RS05610 at 421.589 kb on + strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.637 kb on - strand, within HMPREF1078_RS05610 at 421.676 kb on - strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.725 kb on - strand, within HMPREF1078_RS05610 at 421.725 kb on - strand, within HMPREF1078_RS05610 at 421.747 kb on + strand, within HMPREF1078_RS05610 at 422.051 kb on - strand at 422.126 kb on - strand at 422.172 kb on + strand, within HMPREF1078_RS05615 at 422.173 kb on - strand, within HMPREF1078_RS05615
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 419,191 - HMPREF1078_RS05600 0.39 -0.6 419,196 + HMPREF1078_RS05600 0.39 -1.9 419,197 - HMPREF1078_RS05600 0.39 -0.8 419,197 - HMPREF1078_RS05600 0.39 -0.3 419,220 - HMPREF1078_RS05600 0.41 -0.6 419,246 + HMPREF1078_RS05600 0.42 -1.4 419,264 + HMPREF1078_RS05600 0.44 +2.7 419,295 + HMPREF1078_RS05600 0.46 -0.5 419,295 + HMPREF1078_RS05600 0.46 -1.5 419,297 + HMPREF1078_RS05600 0.46 -1.0 419,297 + HMPREF1078_RS05600 0.46 +0.2 419,297 + HMPREF1078_RS05600 0.46 +0.2 419,297 + HMPREF1078_RS05600 0.46 -1.6 419,298 - HMPREF1078_RS05600 0.46 -0.7 419,335 - HMPREF1078_RS05600 0.49 -0.7 419,419 + HMPREF1078_RS05600 0.54 -1.3 419,488 - HMPREF1078_RS05600 0.59 -0.7 419,518 + HMPREF1078_RS05600 0.61 -3.1 419,556 + HMPREF1078_RS05600 0.64 -0.6 419,557 - HMPREF1078_RS05600 0.64 -1.1 419,575 + HMPREF1078_RS05600 0.65 -2.5 419,575 + HMPREF1078_RS05600 0.65 -0.3 419,636 - HMPREF1078_RS05600 0.69 +1.6 419,710 + HMPREF1078_RS05600 0.74 +1.2 419,710 + HMPREF1078_RS05600 0.74 -1.8 419,710 + HMPREF1078_RS05600 0.74 -0.7 419,710 + HMPREF1078_RS05600 0.74 +1.5 419,710 + HMPREF1078_RS05600 0.74 -0.6 419,711 - HMPREF1078_RS05600 0.75 -0.0 419,711 - HMPREF1078_RS05600 0.75 +0.2 419,711 - HMPREF1078_RS05600 0.75 -1.0 419,711 - HMPREF1078_RS05600 0.75 +1.5 419,715 + HMPREF1078_RS05600 0.75 -2.0 419,722 + HMPREF1078_RS05600 0.75 -1.4 419,728 + HMPREF1078_RS05600 0.76 +1.2 419,829 + HMPREF1078_RS05600 0.83 +1.2 419,833 + HMPREF1078_RS05600 0.83 +0.0 419,833 + HMPREF1078_RS05600 0.83 +1.2 419,833 + HMPREF1078_RS05600 0.83 +1.2 419,833 + HMPREF1078_RS05600 0.83 +1.5 419,833 + HMPREF1078_RS05600 0.83 -1.7 419,833 + HMPREF1078_RS05600 0.83 +2.2 419,833 + HMPREF1078_RS05600 0.83 +0.7 419,834 - HMPREF1078_RS05600 0.83 -0.2 419,834 - HMPREF1078_RS05600 0.83 -0.9 419,834 - HMPREF1078_RS05600 0.83 -0.2 419,835 + HMPREF1078_RS05600 0.83 -3.0 419,835 + HMPREF1078_RS05600 0.83 +0.2 419,836 - HMPREF1078_RS05600 0.83 -1.0 419,838 + HMPREF1078_RS05600 0.83 +2.5 419,844 + HMPREF1078_RS05600 0.84 -1.0 419,845 - HMPREF1078_RS05600 0.84 -2.1 419,845 - HMPREF1078_RS05600 0.84 -0.5 419,846 + HMPREF1078_RS05600 0.84 -0.6 419,846 + HMPREF1078_RS05600 0.84 +2.8 419,846 + HMPREF1078_RS05600 0.84 -1.3 419,846 + HMPREF1078_RS05600 0.84 -1.6 419,927 - HMPREF1078_RS05600 0.90 -2.2 420,044 + +0.4 420,045 - -2.2 420,045 - -0.1 420,045 - -1.1 420,105 - +1.6 420,105 - -0.8 420,144 + -2.6 420,147 - +2.2 420,215 + -2.4 420,238 + -0.4 420,250 + -2.4 420,271 + HMPREF1078_RS05605 0.11 -1.9 420,272 - HMPREF1078_RS05605 0.11 -0.8 420,296 + HMPREF1078_RS05605 0.13 -1.5 420,297 - HMPREF1078_RS05605 0.13 -2.8 420,297 - HMPREF1078_RS05605 0.13 -3.0 420,371 - HMPREF1078_RS05605 0.20 -2.3 420,381 + HMPREF1078_RS05605 0.21 -3.3 420,516 + HMPREF1078_RS05605 0.34 -1.4 420,569 - HMPREF1078_RS05605 0.39 -0.8 420,658 + HMPREF1078_RS05605 0.48 -0.8 420,663 - HMPREF1078_RS05605 0.48 -3.0 420,684 - HMPREF1078_RS05605 0.50 -1.8 420,735 + HMPREF1078_RS05605 0.55 -2.3 420,736 - HMPREF1078_RS05605 0.55 -1.9 420,768 + HMPREF1078_RS05605 0.58 -3.0 420,819 + HMPREF1078_RS05605 0.63 -3.4 420,925 + HMPREF1078_RS05605 0.73 +0.6 420,925 + HMPREF1078_RS05605 0.73 -1.7 420,926 - HMPREF1078_RS05605 0.74 -1.7 420,985 + HMPREF1078_RS05605 0.79 -1.0 420,991 + HMPREF1078_RS05605 0.80 +1.2 421,005 + HMPREF1078_RS05605 0.81 -2.7 421,005 + HMPREF1078_RS05605 0.81 -0.6 421,040 + HMPREF1078_RS05605 0.84 -1.0 421,041 - HMPREF1078_RS05605 0.85 -1.9 421,041 - HMPREF1078_RS05605 0.85 -0.6 421,055 - HMPREF1078_RS05605 0.86 -1.6 421,056 - HMPREF1078_RS05605 0.86 -0.1 421,134 - -1.3 421,298 - -2.0 421,412 - HMPREF1078_RS05610 0.25 -0.7 421,476 - HMPREF1078_RS05610 0.35 -1.4 421,476 - HMPREF1078_RS05610 0.35 +0.2 421,503 + HMPREF1078_RS05610 0.39 +0.6 421,569 - HMPREF1078_RS05610 0.49 -1.3 421,587 + HMPREF1078_RS05610 0.52 -2.5 421,588 - HMPREF1078_RS05610 0.52 -2.5 421,589 + HMPREF1078_RS05610 0.52 -3.6 421,589 + HMPREF1078_RS05610 0.52 -1.5 421,590 - HMPREF1078_RS05610 0.52 -3.2 421,590 - HMPREF1078_RS05610 0.52 -2.1 421,590 - HMPREF1078_RS05610 0.52 -0.6 421,637 - HMPREF1078_RS05610 0.59 -4.1 421,676 - HMPREF1078_RS05610 0.65 -3.5 421,724 + HMPREF1078_RS05610 0.72 -2.3 421,724 + HMPREF1078_RS05610 0.72 -1.7 421,724 + HMPREF1078_RS05610 0.72 -3.3 421,725 - HMPREF1078_RS05610 0.72 -1.5 421,725 - HMPREF1078_RS05610 0.72 -0.1 421,747 + HMPREF1078_RS05610 0.75 +0.2 422,051 - -3.5 422,126 - -2.6 422,172 + HMPREF1078_RS05615 0.13 -0.5 422,173 - HMPREF1078_RS05615 0.13 -2.6
Or see this region's nucleotide sequence