Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03200 and HMPREF1078_RS03205 are separated by 323 nucleotides HMPREF1078_RS03205 and HMPREF1078_RS03210 overlap by 4 nucleotides HMPREF1078_RS03210 and HMPREF1078_RS03215 overlap by 4 nucleotides HMPREF1078_RS03215 and HMPREF1078_RS03220 are separated by 26 nucleotides
HMPREF1078_RS03200: HMPREF1078_RS03200 - site-specific integrase, at 761,208 to 762,134
_RS03200
HMPREF1078_RS03205: HMPREF1078_RS03205 - hypothetical protein, at 762,458 to 763,132
_RS03205
HMPREF1078_RS03210: HMPREF1078_RS03210 - hypothetical protein, at 763,129 to 763,674
_RS03210
HMPREF1078_RS03215: HMPREF1078_RS03215 - DNA topoisomerase I, at 763,671 to 764,216
_RS03215
HMPREF1078_RS03220: HMPREF1078_RS03220 - hypothetical protein, at 764,243 to 764,983
_RS03220
Position (kb) 763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 762.132 kb on + strand at 762.133 kb on - strand at 762.133 kb on - strand at 762.139 kb on - strand at 762.139 kb on - strand at 762.140 kb on + strand at 762.140 kb on + strand at 762.140 kb on + strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.151 kb on + strand at 762.152 kb on - strand at 762.152 kb on - strand at 762.179 kb on - strand at 762.180 kb on + strand at 762.180 kb on + strand at 762.181 kb on - strand at 762.184 kb on + strand at 762.185 kb on - strand at 762.185 kb on - strand at 762.209 kb on + strand at 762.209 kb on + strand at 762.210 kb on - strand at 762.228 kb on + strand at 762.229 kb on - strand at 762.232 kb on - strand at 762.232 kb on - strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.235 kb on - strand at 762.242 kb on + strand at 762.243 kb on - strand at 762.243 kb on - strand at 762.246 kb on + strand at 762.246 kb on + strand at 762.246 kb on + strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.252 kb on - strand at 762.253 kb on + strand at 762.260 kb on + strand at 762.261 kb on - strand at 762.264 kb on + strand at 762.265 kb on - strand at 762.279 kb on + strand at 762.280 kb on - strand at 762.281 kb on + strand at 762.282 kb on - strand at 762.286 kb on + strand at 762.286 kb on + strand at 762.286 kb on + strand at 762.291 kb on + strand at 762.324 kb on - strand at 762.330 kb on - strand at 762.353 kb on - strand at 762.353 kb on - strand at 762.387 kb on - strand at 762.397 kb on + strand at 762.414 kb on + strand at 762.414 kb on + strand at 762.414 kb on + strand at 762.415 kb on - strand at 762.415 kb on - strand at 762.420 kb on - strand at 762.441 kb on + strand at 762.442 kb on - strand at 762.443 kb on + strand at 762.443 kb on + strand at 762.444 kb on - strand at 762.444 kb on - strand at 762.444 kb on - strand at 762.460 kb on - strand at 762.460 kb on - strand at 762.469 kb on + strand at 762.470 kb on - strand at 762.471 kb on + strand at 762.471 kb on + strand at 762.472 kb on - strand at 762.472 kb on - strand at 762.472 kb on - strand at 762.472 kb on - strand at 762.473 kb on + strand at 762.473 kb on + strand at 762.473 kb on + strand at 762.474 kb on - strand at 762.474 kb on - strand at 762.476 kb on - strand at 762.526 kb on + strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.541 kb on + strand, within HMPREF1078_RS03205 at 762.613 kb on + strand, within HMPREF1078_RS03205 at 762.644 kb on - strand, within HMPREF1078_RS03205 at 762.649 kb on + strand, within HMPREF1078_RS03205 at 762.649 kb on + strand, within HMPREF1078_RS03205 at 762.650 kb on - strand, within HMPREF1078_RS03205 at 762.659 kb on - strand, within HMPREF1078_RS03205 at 762.709 kb on + strand, within HMPREF1078_RS03205 at 762.710 kb on - strand, within HMPREF1078_RS03205 at 762.712 kb on - strand, within HMPREF1078_RS03205 at 762.717 kb on + strand, within HMPREF1078_RS03205 at 762.778 kb on + strand, within HMPREF1078_RS03205 at 762.784 kb on - strand, within HMPREF1078_RS03205 at 762.784 kb on - strand, within HMPREF1078_RS03205 at 762.792 kb on + strand, within HMPREF1078_RS03205 at 762.793 kb on - strand, within HMPREF1078_RS03205 at 762.793 kb on - strand, within HMPREF1078_RS03205 at 762.793 kb on - strand, within HMPREF1078_RS03205 at 762.835 kb on + strand, within HMPREF1078_RS03205 at 762.880 kb on + strand, within HMPREF1078_RS03205 at 762.891 kb on + strand, within HMPREF1078_RS03205 at 762.901 kb on - strand, within HMPREF1078_RS03205 at 762.926 kb on - strand, within HMPREF1078_RS03205 at 762.932 kb on + strand, within HMPREF1078_RS03205 at 762.933 kb on - strand, within HMPREF1078_RS03205 at 762.993 kb on - strand, within HMPREF1078_RS03205 at 762.993 kb on - strand, within HMPREF1078_RS03205 at 762.995 kb on - strand, within HMPREF1078_RS03205 at 762.995 kb on - strand, within HMPREF1078_RS03205 at 762.995 kb on - strand, within HMPREF1078_RS03205 at 763.014 kb on - strand, within HMPREF1078_RS03205 at 763.037 kb on + strand, within HMPREF1078_RS03205 at 763.132 kb on + strand at 763.133 kb on - strand at 763.133 kb on - strand at 763.236 kb on - strand, within HMPREF1078_RS03210 at 763.236 kb on - strand, within HMPREF1078_RS03210 at 763.241 kb on - strand, within HMPREF1078_RS03210 at 763.247 kb on - strand, within HMPREF1078_RS03210 at 763.398 kb on + strand, within HMPREF1078_RS03210 at 763.419 kb on + strand, within HMPREF1078_RS03210 at 763.481 kb on + strand, within HMPREF1078_RS03210 at 763.481 kb on + strand, within HMPREF1078_RS03210 at 763.482 kb on - strand, within HMPREF1078_RS03210 at 763.587 kb on + strand, within HMPREF1078_RS03210 at 763.649 kb on - strand at 763.654 kb on + strand at 763.675 kb on - strand at 763.744 kb on + strand, within HMPREF1078_RS03215 at 763.766 kb on + strand, within HMPREF1078_RS03215 at 763.766 kb on + strand, within HMPREF1078_RS03215 at 763.767 kb on - strand, within HMPREF1078_RS03215 at 763.767 kb on - strand, within HMPREF1078_RS03215 at 763.821 kb on + strand, within HMPREF1078_RS03215 at 763.822 kb on - strand, within HMPREF1078_RS03215 at 763.822 kb on - strand, within HMPREF1078_RS03215 at 763.822 kb on - strand, within HMPREF1078_RS03215 at 763.823 kb on + strand, within HMPREF1078_RS03215 at 763.824 kb on - strand, within HMPREF1078_RS03215 at 763.824 kb on - strand, within HMPREF1078_RS03215 at 763.824 kb on - strand, within HMPREF1078_RS03215 at 763.833 kb on + strand, within HMPREF1078_RS03215 at 763.868 kb on - strand, within HMPREF1078_RS03215 at 763.903 kb on - strand, within HMPREF1078_RS03215 at 763.903 kb on - strand, within HMPREF1078_RS03215 at 763.946 kb on + strand, within HMPREF1078_RS03215 at 764.105 kb on + strand, within HMPREF1078_RS03215 at 764.105 kb on + strand, within HMPREF1078_RS03215 at 764.106 kb on - strand, within HMPREF1078_RS03215 at 764.194 kb on - strand at 764.196 kb on - strand at 764.230 kb on + strand at 764.288 kb on + strand at 764.289 kb on - strand at 764.289 kb on - strand at 764.369 kb on + strand, within HMPREF1078_RS03220 at 764.402 kb on - strand, within HMPREF1078_RS03220 at 764.424 kb on - strand, within HMPREF1078_RS03220 at 764.435 kb on + strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.439 kb on + strand, within HMPREF1078_RS03220 at 764.440 kb on - strand, within HMPREF1078_RS03220 at 764.440 kb on - strand, within HMPREF1078_RS03220 at 764.468 kb on + strand, within HMPREF1078_RS03220 at 764.469 kb on - strand, within HMPREF1078_RS03220 at 764.506 kb on + strand, within HMPREF1078_RS03220 at 764.507 kb on - strand, within HMPREF1078_RS03220 at 764.507 kb on - strand, within HMPREF1078_RS03220 at 764.511 kb on + strand, within HMPREF1078_RS03220 at 764.663 kb on + strand, within HMPREF1078_RS03220
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 762,132 + +0.3 762,133 - -0.9 762,133 - -0.4 762,139 - -2.4 762,139 - -0.4 762,140 + -0.3 762,140 + -0.3 762,140 + -0.5 762,141 - -1.0 762,141 - -1.1 762,141 - -0.9 762,141 - +0.6 762,141 - -1.4 762,151 + -2.7 762,152 - -1.4 762,152 - -0.9 762,179 - -0.3 762,180 + +0.7 762,180 + -0.0 762,181 - -0.6 762,184 + -2.3 762,185 - +0.4 762,185 - +1.3 762,209 + -1.0 762,209 + -1.4 762,210 - +0.7 762,228 + +0.6 762,229 - +1.0 762,232 - -1.3 762,232 - +0.7 762,234 + -1.3 762,234 + +1.0 762,235 - -1.8 762,242 + +0.3 762,243 - -0.5 762,243 - -1.0 762,246 + +0.7 762,246 + +0.6 762,246 + -2.5 762,247 - +0.7 762,247 - +1.5 762,247 - -1.3 762,247 - -0.4 762,247 - +0.4 762,247 - -0.5 762,247 - +1.6 762,247 - +0.7 762,252 - -2.2 762,253 + +1.3 762,260 + +3.9 762,261 - -2.1 762,264 + -1.3 762,265 - -1.0 762,279 + -2.0 762,280 - +2.3 762,281 + -1.2 762,282 - -0.9 762,286 + -0.5 762,286 + +0.3 762,286 + +2.6 762,291 + +0.7 762,324 - -0.9 762,330 - -1.7 762,353 - -1.2 762,353 - -0.5 762,387 - -0.2 762,397 + -2.1 762,414 + -0.3 762,414 + -0.6 762,414 + -0.3 762,415 - +0.7 762,415 - -1.0 762,420 - -0.0 762,441 + +1.3 762,442 - -1.5 762,443 + -0.8 762,443 + +0.7 762,444 - +2.3 762,444 - +0.5 762,444 - -0.0 762,460 - -0.5 762,460 - -0.2 762,469 + -0.2 762,470 - +0.7 762,471 + +0.7 762,471 + -1.3 762,472 - -0.5 762,472 - -0.0 762,472 - +2.3 762,472 - +0.3 762,473 + -0.1 762,473 + -0.9 762,473 + +0.3 762,474 - +0.6 762,474 - -0.9 762,476 - +2.3 762,526 + HMPREF1078_RS03205 0.10 -0.3 762,527 - HMPREF1078_RS03205 0.10 -0.0 762,527 - HMPREF1078_RS03205 0.10 +1.7 762,527 - HMPREF1078_RS03205 0.10 -1.2 762,527 - HMPREF1078_RS03205 0.10 +0.6 762,541 + HMPREF1078_RS03205 0.12 +0.5 762,613 + HMPREF1078_RS03205 0.23 +0.7 762,644 - HMPREF1078_RS03205 0.28 -1.9 762,649 + HMPREF1078_RS03205 0.28 -2.6 762,649 + HMPREF1078_RS03205 0.28 +0.2 762,650 - HMPREF1078_RS03205 0.28 +0.5 762,659 - HMPREF1078_RS03205 0.30 -0.3 762,709 + HMPREF1078_RS03205 0.37 -1.9 762,710 - HMPREF1078_RS03205 0.37 -0.9 762,712 - HMPREF1078_RS03205 0.38 +1.3 762,717 + HMPREF1078_RS03205 0.38 +1.3 762,778 + HMPREF1078_RS03205 0.47 -0.3 762,784 - HMPREF1078_RS03205 0.48 -1.0 762,784 - HMPREF1078_RS03205 0.48 -1.8 762,792 + HMPREF1078_RS03205 0.49 -1.6 762,793 - HMPREF1078_RS03205 0.50 -1.0 762,793 - HMPREF1078_RS03205 0.50 -1.1 762,793 - HMPREF1078_RS03205 0.50 +0.7 762,835 + HMPREF1078_RS03205 0.56 -1.3 762,880 + HMPREF1078_RS03205 0.63 -1.9 762,891 + HMPREF1078_RS03205 0.64 +1.1 762,901 - HMPREF1078_RS03205 0.66 -0.9 762,926 - HMPREF1078_RS03205 0.69 +1.1 762,932 + HMPREF1078_RS03205 0.70 -0.8 762,933 - HMPREF1078_RS03205 0.70 -0.4 762,993 - HMPREF1078_RS03205 0.79 -0.9 762,993 - HMPREF1078_RS03205 0.79 +0.3 762,995 - HMPREF1078_RS03205 0.80 -0.0 762,995 - HMPREF1078_RS03205 0.80 -1.4 762,995 - HMPREF1078_RS03205 0.80 -0.3 763,014 - HMPREF1078_RS03205 0.82 -0.3 763,037 + HMPREF1078_RS03205 0.86 -1.2 763,132 + +2.3 763,133 - +0.6 763,133 - -0.7 763,236 - HMPREF1078_RS03210 0.20 -0.5 763,236 - HMPREF1078_RS03210 0.20 +3.3 763,241 - HMPREF1078_RS03210 0.21 +1.5 763,247 - HMPREF1078_RS03210 0.22 -1.7 763,398 + HMPREF1078_RS03210 0.49 -0.0 763,419 + HMPREF1078_RS03210 0.53 -0.5 763,481 + HMPREF1078_RS03210 0.64 -1.9 763,481 + HMPREF1078_RS03210 0.64 +1.3 763,482 - HMPREF1078_RS03210 0.65 +2.3 763,587 + HMPREF1078_RS03210 0.84 -1.8 763,649 - -0.3 763,654 + -0.5 763,675 - -1.0 763,744 + HMPREF1078_RS03215 0.13 +0.3 763,766 + HMPREF1078_RS03215 0.17 +0.1 763,766 + HMPREF1078_RS03215 0.17 -0.7 763,767 - HMPREF1078_RS03215 0.18 -0.4 763,767 - HMPREF1078_RS03215 0.18 -1.6 763,821 + HMPREF1078_RS03215 0.27 -1.2 763,822 - HMPREF1078_RS03215 0.28 -2.9 763,822 - HMPREF1078_RS03215 0.28 +1.3 763,822 - HMPREF1078_RS03215 0.28 -1.0 763,823 + HMPREF1078_RS03215 0.28 -1.2 763,824 - HMPREF1078_RS03215 0.28 +1.3 763,824 - HMPREF1078_RS03215 0.28 -0.0 763,824 - HMPREF1078_RS03215 0.28 +0.2 763,833 + HMPREF1078_RS03215 0.30 -1.0 763,868 - HMPREF1078_RS03215 0.36 -1.5 763,903 - HMPREF1078_RS03215 0.42 +2.0 763,903 - HMPREF1078_RS03215 0.42 -0.7 763,946 + HMPREF1078_RS03215 0.50 -0.7 764,105 + HMPREF1078_RS03215 0.79 -0.3 764,105 + HMPREF1078_RS03215 0.79 -0.0 764,106 - HMPREF1078_RS03215 0.80 -0.9 764,194 - +1.3 764,196 - -2.2 764,230 + +2.9 764,288 + -1.6 764,289 - +0.9 764,289 - +0.8 764,369 + HMPREF1078_RS03220 0.17 +0.3 764,402 - HMPREF1078_RS03220 0.21 -0.0 764,424 - HMPREF1078_RS03220 0.24 -0.2 764,435 + HMPREF1078_RS03220 0.26 -0.9 764,436 - HMPREF1078_RS03220 0.26 -0.5 764,436 - HMPREF1078_RS03220 0.26 -0.8 764,436 - HMPREF1078_RS03220 0.26 -1.0 764,436 - HMPREF1078_RS03220 0.26 -1.3 764,439 + HMPREF1078_RS03220 0.26 +0.1 764,440 - HMPREF1078_RS03220 0.27 -0.3 764,440 - HMPREF1078_RS03220 0.27 -0.3 764,468 + HMPREF1078_RS03220 0.30 -2.5 764,469 - HMPREF1078_RS03220 0.30 -0.0 764,506 + HMPREF1078_RS03220 0.35 -0.3 764,507 - HMPREF1078_RS03220 0.36 -1.0 764,507 - HMPREF1078_RS03220 0.36 -0.0 764,511 + HMPREF1078_RS03220 0.36 -0.6 764,663 + HMPREF1078_RS03220 0.57 +0.5
Or see this region's nucleotide sequence