Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02465

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02460 and HMPREF1078_RS02465 are separated by 16 nucleotidesHMPREF1078_RS02465 and HMPREF1078_RS02470 are separated by 0 nucleotides HMPREF1078_RS02460: HMPREF1078_RS02460 - M1 family aminopeptidase, at 603,690 to 606,236 _RS02460 HMPREF1078_RS02465: HMPREF1078_RS02465 - DUF4268 domain-containing protein, at 606,253 to 606,708 _RS02465 HMPREF1078_RS02470: HMPREF1078_RS02470 - insulinase family protein, at 606,709 to 609,573 _RS02470 Position (kb) 606 607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 605.261 kb on + strand, within HMPREF1078_RS02460at 605.261 kb on + strand, within HMPREF1078_RS02460at 605.261 kb on + strand, within HMPREF1078_RS02460at 605.348 kb on + strand, within HMPREF1078_RS02460at 605.349 kb on - strand, within HMPREF1078_RS02460at 605.349 kb on - strand, within HMPREF1078_RS02460at 605.351 kb on - strand, within HMPREF1078_RS02460at 605.353 kb on - strand, within HMPREF1078_RS02460at 605.367 kb on - strand, within HMPREF1078_RS02460at 605.413 kb on + strand, within HMPREF1078_RS02460at 605.414 kb on - strand, within HMPREF1078_RS02460at 605.428 kb on + strand, within HMPREF1078_RS02460at 605.433 kb on + strand, within HMPREF1078_RS02460at 605.433 kb on + strand, within HMPREF1078_RS02460at 605.433 kb on + strand, within HMPREF1078_RS02460at 605.433 kb on + strand, within HMPREF1078_RS02460at 605.433 kb on + strand, within HMPREF1078_RS02460at 605.434 kb on - strand, within HMPREF1078_RS02460at 605.434 kb on - strand, within HMPREF1078_RS02460at 605.434 kb on - strand, within HMPREF1078_RS02460at 605.441 kb on + strand, within HMPREF1078_RS02460at 605.442 kb on - strand, within HMPREF1078_RS02460at 605.442 kb on - strand, within HMPREF1078_RS02460at 605.444 kb on - strand, within HMPREF1078_RS02460at 605.602 kb on + strand, within HMPREF1078_RS02460at 605.802 kb on - strand, within HMPREF1078_RS02460at 605.803 kb on + strand, within HMPREF1078_RS02460at 605.804 kb on - strand, within HMPREF1078_RS02460at 605.904 kb on - strand, within HMPREF1078_RS02460at 605.921 kb on + strand, within HMPREF1078_RS02460at 605.921 kb on + strand, within HMPREF1078_RS02460at 605.921 kb on + strand, within HMPREF1078_RS02460at 605.922 kb on - strand, within HMPREF1078_RS02460at 605.922 kb on - strand, within HMPREF1078_RS02460at 605.922 kb on - strand, within HMPREF1078_RS02460at 605.923 kb on + strand, within HMPREF1078_RS02460at 605.924 kb on - strand, within HMPREF1078_RS02460at 605.935 kb on + strand, within HMPREF1078_RS02460at 605.958 kb on + strand, within HMPREF1078_RS02460at 605.958 kb on + strand, within HMPREF1078_RS02460at 605.959 kb on - strand, within HMPREF1078_RS02460at 605.985 kb on + strandat 606.012 kb on - strandat 606.022 kb on - strandat 606.164 kb on + strandat 606.165 kb on - strandat 606.165 kb on - strandat 606.165 kb on - strandat 606.187 kb on - strandat 606.194 kb on + strandat 606.195 kb on - strandat 606.195 kb on - strandat 606.208 kb on - strandat 606.208 kb on - strandat 606.275 kb on - strandat 606.303 kb on - strand, within HMPREF1078_RS02465at 606.318 kb on + strand, within HMPREF1078_RS02465at 606.380 kb on + strand, within HMPREF1078_RS02465at 606.449 kb on + strand, within HMPREF1078_RS02465at 606.463 kb on - strand, within HMPREF1078_RS02465at 606.468 kb on + strand, within HMPREF1078_RS02465at 606.469 kb on - strand, within HMPREF1078_RS02465at 606.469 kb on - strand, within HMPREF1078_RS02465at 606.469 kb on - strand, within HMPREF1078_RS02465at 606.471 kb on - strand, within HMPREF1078_RS02465at 606.471 kb on - strand, within HMPREF1078_RS02465at 606.517 kb on - strand, within HMPREF1078_RS02465at 606.597 kb on - strand, within HMPREF1078_RS02465at 606.598 kb on + strand, within HMPREF1078_RS02465at 606.598 kb on + strand, within HMPREF1078_RS02465at 606.629 kb on + strand, within HMPREF1078_RS02465at 606.637 kb on + strand, within HMPREF1078_RS02465at 606.702 kb on + strandat 606.704 kb on + strandat 606.705 kb on - strandat 606.705 kb on - strandat 606.714 kb on + strandat 606.716 kb on + strandat 606.717 kb on - strandat 606.717 kb on - strandat 606.717 kb on - strandat 606.718 kb on + strandat 606.718 kb on + strandat 606.718 kb on + strandat 606.718 kb on + strandat 606.719 kb on - strandat 606.719 kb on - strandat 606.739 kb on + strandat 606.740 kb on - strandat 606.742 kb on + strandat 606.743 kb on - strandat 606.747 kb on + strandat 606.778 kb on - strandat 606.778 kb on - strandat 606.796 kb on - strandat 606.804 kb on - strandat 606.850 kb on - strandat 606.850 kb on - strandat 606.975 kb on + strandat 607.101 kb on + strand, within HMPREF1078_RS02470at 607.187 kb on - strand, within HMPREF1078_RS02470at 607.187 kb on - strand, within HMPREF1078_RS02470at 607.212 kb on + strand, within HMPREF1078_RS02470at 607.212 kb on + strand, within HMPREF1078_RS02470at 607.323 kb on + strand, within HMPREF1078_RS02470at 607.371 kb on - strand, within HMPREF1078_RS02470at 607.512 kb on + strand, within HMPREF1078_RS02470at 607.513 kb on - strand, within HMPREF1078_RS02470at 607.513 kb on - strand, within HMPREF1078_RS02470at 607.585 kb on + strand, within HMPREF1078_RS02470at 607.672 kb on + strand, within HMPREF1078_RS02470at 607.672 kb on + strand, within HMPREF1078_RS02470at 607.672 kb on + strand, within HMPREF1078_RS02470

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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605,261 + HMPREF1078_RS02460 0.62 +2.3
605,261 + HMPREF1078_RS02460 0.62 -1.1
605,261 + HMPREF1078_RS02460 0.62 -1.6
605,348 + HMPREF1078_RS02460 0.65 -1.3
605,349 - HMPREF1078_RS02460 0.65 -0.3
605,349 - HMPREF1078_RS02460 0.65 +1.3
605,351 - HMPREF1078_RS02460 0.65 -0.3
605,353 - HMPREF1078_RS02460 0.65 -0.8
605,367 - HMPREF1078_RS02460 0.66 -0.3
605,413 + HMPREF1078_RS02460 0.68 -1.0
605,414 - HMPREF1078_RS02460 0.68 +1.3
605,428 + HMPREF1078_RS02460 0.68 -3.0
605,433 + HMPREF1078_RS02460 0.68 -0.9
605,433 + HMPREF1078_RS02460 0.68 -1.3
605,433 + HMPREF1078_RS02460 0.68 -1.0
605,433 + HMPREF1078_RS02460 0.68 -1.3
605,433 + HMPREF1078_RS02460 0.68 -0.3
605,434 - HMPREF1078_RS02460 0.68 -1.2
605,434 - HMPREF1078_RS02460 0.68 -1.6
605,434 - HMPREF1078_RS02460 0.68 -1.1
605,441 + HMPREF1078_RS02460 0.69 +0.7
605,442 - HMPREF1078_RS02460 0.69 +0.7
605,442 - HMPREF1078_RS02460 0.69 +0.7
605,444 - HMPREF1078_RS02460 0.69 +0.3
605,602 + HMPREF1078_RS02460 0.75 -1.1
605,802 - HMPREF1078_RS02460 0.83 -0.7
605,803 + HMPREF1078_RS02460 0.83 +0.6
605,804 - HMPREF1078_RS02460 0.83 -1.3
605,904 - HMPREF1078_RS02460 0.87 -0.1
605,921 + HMPREF1078_RS02460 0.88 -1.8
605,921 + HMPREF1078_RS02460 0.88 -0.8
605,921 + HMPREF1078_RS02460 0.88 +1.0
605,922 - HMPREF1078_RS02460 0.88 -1.4
605,922 - HMPREF1078_RS02460 0.88 -1.1
605,922 - HMPREF1078_RS02460 0.88 +0.5
605,923 + HMPREF1078_RS02460 0.88 +0.4
605,924 - HMPREF1078_RS02460 0.88 +1.1
605,935 + HMPREF1078_RS02460 0.88 +0.0
605,958 + HMPREF1078_RS02460 0.89 +2.3
605,958 + HMPREF1078_RS02460 0.89 -0.1
605,959 - HMPREF1078_RS02460 0.89 +0.3
605,985 + +1.3
606,012 - -1.5
606,022 - +0.3
606,164 + -1.1
606,165 - +0.4
606,165 - -0.0
606,165 - -1.5
606,187 - +2.0
606,194 + -0.2
606,195 - -1.6
606,195 - +0.2
606,208 - -0.5
606,208 - +0.7
606,275 - -0.4
606,303 - HMPREF1078_RS02465 0.11 -0.3
606,318 + HMPREF1078_RS02465 0.14 +1.3
606,380 + HMPREF1078_RS02465 0.28 +0.0
606,449 + HMPREF1078_RS02465 0.43 +1.3
606,463 - HMPREF1078_RS02465 0.46 -1.0
606,468 + HMPREF1078_RS02465 0.47 -0.3
606,469 - HMPREF1078_RS02465 0.47 -1.0
606,469 - HMPREF1078_RS02465 0.47 -0.6
606,469 - HMPREF1078_RS02465 0.47 +0.0
606,471 - HMPREF1078_RS02465 0.48 -1.0
606,471 - HMPREF1078_RS02465 0.48 -1.7
606,517 - HMPREF1078_RS02465 0.58 -1.8
606,597 - HMPREF1078_RS02465 0.75 -1.6
606,598 + HMPREF1078_RS02465 0.76 -2.5
606,598 + HMPREF1078_RS02465 0.76 +2.3
606,629 + HMPREF1078_RS02465 0.82 -0.9
606,637 + HMPREF1078_RS02465 0.84 -2.9
606,702 + -0.7
606,704 + +0.7
606,705 - -1.6
606,705 - -1.3
606,714 + -0.8
606,716 + +1.5
606,717 - -1.3
606,717 - +0.3
606,717 - -1.4
606,718 + -1.9
606,718 + -0.3
606,718 + -2.5
606,718 + -0.5
606,719 - +1.3
606,719 - +0.3
606,739 + -0.6
606,740 - +0.6
606,742 + -2.3
606,743 - -0.4
606,747 + -0.8
606,778 - -0.8
606,778 - -0.5
606,796 - +1.3
606,804 - -0.3
606,850 - -1.3
606,850 - -0.3
606,975 + +0.2
607,101 + HMPREF1078_RS02470 0.14 +1.2
607,187 - HMPREF1078_RS02470 0.17 +0.1
607,187 - HMPREF1078_RS02470 0.17 -0.6
607,212 + HMPREF1078_RS02470 0.18 +0.3
607,212 + HMPREF1078_RS02470 0.18 +0.4
607,323 + HMPREF1078_RS02470 0.21 -1.9
607,371 - HMPREF1078_RS02470 0.23 -1.2
607,512 + HMPREF1078_RS02470 0.28 -0.5
607,513 - HMPREF1078_RS02470 0.28 +0.1
607,513 - HMPREF1078_RS02470 0.28 -0.7
607,585 + HMPREF1078_RS02470 0.31 +0.7
607,672 + HMPREF1078_RS02470 0.34 -2.4
607,672 + HMPREF1078_RS02470 0.34 -0.5
607,672 + HMPREF1078_RS02470 0.34 -0.8

Or see this region's nucleotide sequence