Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02145

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02140 and HMPREF1078_RS02145 are separated by 116 nucleotidesHMPREF1078_RS02145 and HMPREF1078_RS02150 are separated by 108 nucleotides HMPREF1078_RS02140: HMPREF1078_RS02140 - family 20 glycosylhydrolase, at 531,918 to 534,266 _RS02140 HMPREF1078_RS02145: HMPREF1078_RS02145 - serine hydroxymethyltransferase, at 534,383 to 535,663 _RS02145 HMPREF1078_RS02150: HMPREF1078_RS02150 - Gfo/Idh/MocA family oxidoreductase, at 535,772 to 536,827 _RS02150 Position (kb) 534 535 536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 533.399 kb on + strand, within HMPREF1078_RS02140at 533.516 kb on - strand, within HMPREF1078_RS02140at 533.520 kb on + strand, within HMPREF1078_RS02140at 533.546 kb on + strand, within HMPREF1078_RS02140at 533.547 kb on - strand, within HMPREF1078_RS02140at 533.559 kb on - strand, within HMPREF1078_RS02140at 533.559 kb on - strand, within HMPREF1078_RS02140at 533.560 kb on + strand, within HMPREF1078_RS02140at 533.561 kb on - strand, within HMPREF1078_RS02140at 533.561 kb on - strand, within HMPREF1078_RS02140at 533.688 kb on + strand, within HMPREF1078_RS02140at 533.689 kb on - strand, within HMPREF1078_RS02140at 533.692 kb on - strand, within HMPREF1078_RS02140at 533.692 kb on - strand, within HMPREF1078_RS02140at 533.692 kb on - strand, within HMPREF1078_RS02140at 533.692 kb on - strand, within HMPREF1078_RS02140at 533.820 kb on + strand, within HMPREF1078_RS02140at 533.879 kb on - strand, within HMPREF1078_RS02140at 533.901 kb on - strand, within HMPREF1078_RS02140at 533.941 kb on + strand, within HMPREF1078_RS02140at 533.941 kb on + strand, within HMPREF1078_RS02140at 533.956 kb on - strand, within HMPREF1078_RS02140at 534.019 kb on - strand, within HMPREF1078_RS02140at 534.074 kb on + strandat 534.125 kb on + strandat 534.194 kb on + strandat 534.224 kb on + strandat 534.277 kb on - strandat 534.350 kb on - strandat 534.350 kb on - strandat 534.357 kb on - strandat 534.377 kb on - strandat 534.384 kb on + strandat 534.385 kb on - strandat 534.385 kb on - strandat 534.397 kb on + strandat 534.397 kb on + strandat 534.397 kb on + strandat 534.398 kb on - strandat 534.398 kb on - strandat 534.402 kb on + strandat 534.402 kb on + strandat 534.403 kb on - strandat 534.446 kb on - strandat 534.446 kb on - strandat 534.598 kb on + strand, within HMPREF1078_RS02145at 534.598 kb on + strand, within HMPREF1078_RS02145at 534.598 kb on + strand, within HMPREF1078_RS02145at 534.599 kb on - strand, within HMPREF1078_RS02145at 534.599 kb on - strand, within HMPREF1078_RS02145at 534.599 kb on - strand, within HMPREF1078_RS02145at 534.626 kb on + strand, within HMPREF1078_RS02145at 534.726 kb on + strand, within HMPREF1078_RS02145at 534.727 kb on - strand, within HMPREF1078_RS02145at 534.754 kb on + strand, within HMPREF1078_RS02145at 534.773 kb on + strand, within HMPREF1078_RS02145at 534.786 kb on + strand, within HMPREF1078_RS02145at 534.787 kb on - strand, within HMPREF1078_RS02145at 534.795 kb on + strand, within HMPREF1078_RS02145at 534.796 kb on - strand, within HMPREF1078_RS02145at 534.866 kb on + strand, within HMPREF1078_RS02145at 534.867 kb on - strand, within HMPREF1078_RS02145at 534.867 kb on - strand, within HMPREF1078_RS02145at 534.958 kb on + strand, within HMPREF1078_RS02145at 534.963 kb on - strand, within HMPREF1078_RS02145at 535.017 kb on - strand, within HMPREF1078_RS02145at 535.017 kb on - strand, within HMPREF1078_RS02145at 535.017 kb on - strand, within HMPREF1078_RS02145at 535.030 kb on - strand, within HMPREF1078_RS02145at 535.042 kb on + strand, within HMPREF1078_RS02145at 535.043 kb on - strand, within HMPREF1078_RS02145at 535.196 kb on + strand, within HMPREF1078_RS02145at 535.226 kb on + strand, within HMPREF1078_RS02145at 535.248 kb on - strand, within HMPREF1078_RS02145at 535.248 kb on - strand, within HMPREF1078_RS02145at 535.254 kb on + strand, within HMPREF1078_RS02145at 535.254 kb on + strand, within HMPREF1078_RS02145at 535.271 kb on + strand, within HMPREF1078_RS02145at 535.272 kb on - strand, within HMPREF1078_RS02145at 535.277 kb on - strand, within HMPREF1078_RS02145at 535.331 kb on + strand, within HMPREF1078_RS02145at 535.337 kb on + strand, within HMPREF1078_RS02145at 535.338 kb on - strand, within HMPREF1078_RS02145at 535.409 kb on + strand, within HMPREF1078_RS02145at 535.409 kb on + strand, within HMPREF1078_RS02145at 535.409 kb on + strand, within HMPREF1078_RS02145at 535.410 kb on - strand, within HMPREF1078_RS02145at 535.410 kb on - strand, within HMPREF1078_RS02145at 535.410 kb on - strand, within HMPREF1078_RS02145at 535.410 kb on - strand, within HMPREF1078_RS02145at 535.410 kb on - strand, within HMPREF1078_RS02145at 535.459 kb on + strand, within HMPREF1078_RS02145at 535.476 kb on - strand, within HMPREF1078_RS02145at 535.476 kb on - strand, within HMPREF1078_RS02145at 535.478 kb on + strand, within HMPREF1078_RS02145at 535.479 kb on - strand, within HMPREF1078_RS02145at 535.495 kb on - strand, within HMPREF1078_RS02145at 535.495 kb on - strand, within HMPREF1078_RS02145at 535.498 kb on - strand, within HMPREF1078_RS02145at 535.498 kb on - strand, within HMPREF1078_RS02145at 535.525 kb on - strand, within HMPREF1078_RS02145at 535.648 kb on + strandat 535.649 kb on - strandat 535.664 kb on + strandat 535.665 kb on - strandat 535.665 kb on - strandat 535.670 kb on + strandat 535.671 kb on - strandat 535.671 kb on - strandat 535.744 kb on - strandat 535.756 kb on + strandat 535.757 kb on - strandat 535.775 kb on + strandat 535.841 kb on + strandat 535.890 kb on + strand, within HMPREF1078_RS02150at 535.891 kb on - strand, within HMPREF1078_RS02150at 535.891 kb on - strand, within HMPREF1078_RS02150at 535.914 kb on + strand, within HMPREF1078_RS02150at 535.914 kb on + strand, within HMPREF1078_RS02150at 535.935 kb on + strand, within HMPREF1078_RS02150at 535.988 kb on - strand, within HMPREF1078_RS02150at 536.130 kb on + strand, within HMPREF1078_RS02150at 536.180 kb on + strand, within HMPREF1078_RS02150at 536.197 kb on - strand, within HMPREF1078_RS02150at 536.204 kb on + strand, within HMPREF1078_RS02150at 536.205 kb on - strand, within HMPREF1078_RS02150at 536.205 kb on - strand, within HMPREF1078_RS02150at 536.205 kb on - strand, within HMPREF1078_RS02150at 536.262 kb on - strand, within HMPREF1078_RS02150at 536.262 kb on - strand, within HMPREF1078_RS02150at 536.287 kb on + strand, within HMPREF1078_RS02150at 536.288 kb on - strand, within HMPREF1078_RS02150at 536.354 kb on + strand, within HMPREF1078_RS02150at 536.438 kb on - strand, within HMPREF1078_RS02150at 536.470 kb on - strand, within HMPREF1078_RS02150at 536.471 kb on + strand, within HMPREF1078_RS02150at 536.471 kb on + strand, within HMPREF1078_RS02150at 536.471 kb on + strand, within HMPREF1078_RS02150at 536.472 kb on - strand, within HMPREF1078_RS02150at 536.472 kb on - strand, within HMPREF1078_RS02150at 536.472 kb on - strand, within HMPREF1078_RS02150at 536.510 kb on + strand, within HMPREF1078_RS02150at 536.591 kb on - strand, within HMPREF1078_RS02150at 536.591 kb on - strand, within HMPREF1078_RS02150at 536.591 kb on - strand, within HMPREF1078_RS02150at 536.592 kb on + strand, within HMPREF1078_RS02150at 536.592 kb on + strand, within HMPREF1078_RS02150at 536.592 kb on + strand, within HMPREF1078_RS02150at 536.593 kb on - strand, within HMPREF1078_RS02150at 536.593 kb on - strand, within HMPREF1078_RS02150at 536.598 kb on + strand, within HMPREF1078_RS02150at 536.599 kb on - strand, within HMPREF1078_RS02150at 536.599 kb on - strand, within HMPREF1078_RS02150at 536.605 kb on + strand, within HMPREF1078_RS02150at 536.606 kb on - strand, within HMPREF1078_RS02150at 536.617 kb on + strand, within HMPREF1078_RS02150

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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533,399 + HMPREF1078_RS02140 0.63 -2.5
533,516 - HMPREF1078_RS02140 0.68 -1.6
533,520 + HMPREF1078_RS02140 0.68 +0.2
533,546 + HMPREF1078_RS02140 0.69 -0.6
533,547 - HMPREF1078_RS02140 0.69 -1.9
533,559 - HMPREF1078_RS02140 0.70 -0.4
533,559 - HMPREF1078_RS02140 0.70 -0.4
533,560 + HMPREF1078_RS02140 0.70 -0.2
533,561 - HMPREF1078_RS02140 0.70 -2.6
533,561 - HMPREF1078_RS02140 0.70 -0.4
533,688 + HMPREF1078_RS02140 0.75 +0.8
533,689 - HMPREF1078_RS02140 0.75 +0.4
533,692 - HMPREF1078_RS02140 0.76 -2.3
533,692 - HMPREF1078_RS02140 0.76 +0.1
533,692 - HMPREF1078_RS02140 0.76 -3.0
533,692 - HMPREF1078_RS02140 0.76 -1.6
533,820 + HMPREF1078_RS02140 0.81 -1.1
533,879 - HMPREF1078_RS02140 0.83 -1.5
533,901 - HMPREF1078_RS02140 0.84 -1.0
533,941 + HMPREF1078_RS02140 0.86 -1.8
533,941 + HMPREF1078_RS02140 0.86 -0.6
533,956 - HMPREF1078_RS02140 0.87 -0.4
534,019 - HMPREF1078_RS02140 0.89 -0.1
534,074 + +0.6
534,125 + +1.4
534,194 + +0.5
534,224 + +0.1
534,277 - +0.0
534,350 - +1.4
534,350 - +1.0
534,357 - +0.6
534,377 - -0.4
534,384 + -0.1
534,385 - -1.4
534,385 - +1.2
534,397 + -0.8
534,397 + -1.2
534,397 + -2.1
534,398 - -0.5
534,398 - -1.0
534,402 + -1.5
534,402 + -1.6
534,403 - -2.3
534,446 - +0.4
534,446 - -2.7
534,598 + HMPREF1078_RS02145 0.17 +0.4
534,598 + HMPREF1078_RS02145 0.17 +1.1
534,598 + HMPREF1078_RS02145 0.17 +1.4
534,599 - HMPREF1078_RS02145 0.17 -0.1
534,599 - HMPREF1078_RS02145 0.17 -0.7
534,599 - HMPREF1078_RS02145 0.17 -0.7
534,626 + HMPREF1078_RS02145 0.19 -1.3
534,726 + HMPREF1078_RS02145 0.27 -1.7
534,727 - HMPREF1078_RS02145 0.27 -1.2
534,754 + HMPREF1078_RS02145 0.29 -1.1
534,773 + HMPREF1078_RS02145 0.30 -1.5
534,786 + HMPREF1078_RS02145 0.31 -2.3
534,787 - HMPREF1078_RS02145 0.32 +0.1
534,795 + HMPREF1078_RS02145 0.32 -1.8
534,796 - HMPREF1078_RS02145 0.32 -2.4
534,866 + HMPREF1078_RS02145 0.38 -1.8
534,867 - HMPREF1078_RS02145 0.38 -1.1
534,867 - HMPREF1078_RS02145 0.38 -1.8
534,958 + HMPREF1078_RS02145 0.45 -0.9
534,963 - HMPREF1078_RS02145 0.45 -2.9
535,017 - HMPREF1078_RS02145 0.49 -1.2
535,017 - HMPREF1078_RS02145 0.49 -1.4
535,017 - HMPREF1078_RS02145 0.49 -0.6
535,030 - HMPREF1078_RS02145 0.51 +0.4
535,042 + HMPREF1078_RS02145 0.51 -1.9
535,043 - HMPREF1078_RS02145 0.52 -1.0
535,196 + HMPREF1078_RS02145 0.63 -0.6
535,226 + HMPREF1078_RS02145 0.66 -1.5
535,248 - HMPREF1078_RS02145 0.68 -2.9
535,248 - HMPREF1078_RS02145 0.68 -1.5
535,254 + HMPREF1078_RS02145 0.68 -0.8
535,254 + HMPREF1078_RS02145 0.68 -0.9
535,271 + HMPREF1078_RS02145 0.69 -1.1
535,272 - HMPREF1078_RS02145 0.69 -3.1
535,277 - HMPREF1078_RS02145 0.70 -1.3
535,331 + HMPREF1078_RS02145 0.74 +2.4
535,337 + HMPREF1078_RS02145 0.74 -2.7
535,338 - HMPREF1078_RS02145 0.75 -1.1
535,409 + HMPREF1078_RS02145 0.80 -1.9
535,409 + HMPREF1078_RS02145 0.80 +0.5
535,409 + HMPREF1078_RS02145 0.80 -0.8
535,410 - HMPREF1078_RS02145 0.80 -0.2
535,410 - HMPREF1078_RS02145 0.80 -2.4
535,410 - HMPREF1078_RS02145 0.80 -1.3
535,410 - HMPREF1078_RS02145 0.80 -1.8
535,410 - HMPREF1078_RS02145 0.80 -4.4
535,459 + HMPREF1078_RS02145 0.84 -1.4
535,476 - HMPREF1078_RS02145 0.85 -3.3
535,476 - HMPREF1078_RS02145 0.85 +1.4
535,478 + HMPREF1078_RS02145 0.85 -0.8
535,479 - HMPREF1078_RS02145 0.86 -2.1
535,495 - HMPREF1078_RS02145 0.87 -2.1
535,495 - HMPREF1078_RS02145 0.87 +0.3
535,498 - HMPREF1078_RS02145 0.87 -0.9
535,498 - HMPREF1078_RS02145 0.87 -3.2
535,525 - HMPREF1078_RS02145 0.89 -2.4
535,648 + +2.4
535,649 - -1.1
535,664 + +0.4
535,665 - -3.8
535,665 - -0.3
535,670 + -0.6
535,671 - -1.8
535,671 - +0.5
535,744 - -1.4
535,756 + -0.8
535,757 - -0.1
535,775 + -0.8
535,841 + -0.4
535,890 + HMPREF1078_RS02150 0.11 +0.1
535,891 - HMPREF1078_RS02150 0.11 +2.4
535,891 - HMPREF1078_RS02150 0.11 +0.3
535,914 + HMPREF1078_RS02150 0.13 -0.9
535,914 + HMPREF1078_RS02150 0.13 -1.3
535,935 + HMPREF1078_RS02150 0.15 +0.8
535,988 - HMPREF1078_RS02150 0.20 -0.2
536,130 + HMPREF1078_RS02150 0.34 +1.6
536,180 + HMPREF1078_RS02150 0.39 -0.7
536,197 - HMPREF1078_RS02150 0.40 +1.4
536,204 + HMPREF1078_RS02150 0.41 -0.2
536,205 - HMPREF1078_RS02150 0.41 -0.8
536,205 - HMPREF1078_RS02150 0.41 +0.4
536,205 - HMPREF1078_RS02150 0.41 -0.8
536,262 - HMPREF1078_RS02150 0.46 -0.5
536,262 - HMPREF1078_RS02150 0.46 +1.0
536,287 + HMPREF1078_RS02150 0.49 +0.4
536,288 - HMPREF1078_RS02150 0.49 -0.9
536,354 + HMPREF1078_RS02150 0.55 -1.1
536,438 - HMPREF1078_RS02150 0.63 -0.5
536,470 - HMPREF1078_RS02150 0.66 +0.1
536,471 + HMPREF1078_RS02150 0.66 -0.4
536,471 + HMPREF1078_RS02150 0.66 -1.1
536,471 + HMPREF1078_RS02150 0.66 -2.0
536,472 - HMPREF1078_RS02150 0.66 -0.6
536,472 - HMPREF1078_RS02150 0.66 +0.8
536,472 - HMPREF1078_RS02150 0.66 +1.4
536,510 + HMPREF1078_RS02150 0.70 +0.5
536,591 - HMPREF1078_RS02150 0.78 +0.1
536,591 - HMPREF1078_RS02150 0.78 +0.8
536,591 - HMPREF1078_RS02150 0.78 -1.9
536,592 + HMPREF1078_RS02150 0.78 +2.0
536,592 + HMPREF1078_RS02150 0.78 -1.0
536,592 + HMPREF1078_RS02150 0.78 -0.8
536,593 - HMPREF1078_RS02150 0.78 -0.4
536,593 - HMPREF1078_RS02150 0.78 +0.8
536,598 + HMPREF1078_RS02150 0.78 +0.2
536,599 - HMPREF1078_RS02150 0.78 -0.6
536,599 - HMPREF1078_RS02150 0.78 -1.5
536,605 + HMPREF1078_RS02150 0.79 -1.9
536,606 - HMPREF1078_RS02150 0.79 +0.4
536,617 + HMPREF1078_RS02150 0.80 +1.2

Or see this region's nucleotide sequence