Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01685 and HMPREF1078_RS01690 are separated by 189 nucleotides HMPREF1078_RS01690 and HMPREF1078_RS01695 are separated by 34 nucleotides HMPREF1078_RS01695 and HMPREF1078_RS01700 are separated by 73 nucleotides
HMPREF1078_RS01685: HMPREF1078_RS01685 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 423,862 to 424,677
_RS01685
HMPREF1078_RS01690: HMPREF1078_RS01690 - SLC13 family permease, at 424,867 to 426,420
_RS01690
HMPREF1078_RS01695: HMPREF1078_RS01695 - four helix bundle protein, at 426,455 to 426,820
_RS01695
HMPREF1078_RS01700: HMPREF1078_RS01700 - adenylyl-sulfate kinase, at 426,894 to 427,469
_RS01700
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 423.881 kb on - strand at 423.881 kb on - strand at 423.886 kb on + strand at 423.887 kb on - strand at 423.887 kb on - strand at 423.888 kb on + strand at 423.888 kb on + strand at 423.889 kb on - strand at 423.889 kb on - strand at 423.889 kb on - strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.894 kb on + strand at 423.894 kb on + strand at 423.895 kb on - strand at 423.895 kb on - strand at 423.933 kb on + strand at 423.937 kb on + strand at 423.937 kb on + strand at 424.152 kb on + strand, within HMPREF1078_RS01685 at 424.174 kb on - strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.226 kb on - strand, within HMPREF1078_RS01685 at 424.249 kb on + strand, within HMPREF1078_RS01685 at 424.303 kb on + strand, within HMPREF1078_RS01685 at 424.304 kb on - strand, within HMPREF1078_RS01685 at 424.325 kb on + strand, within HMPREF1078_RS01685 at 424.325 kb on + strand, within HMPREF1078_RS01685 at 424.340 kb on + strand, within HMPREF1078_RS01685 at 424.340 kb on + strand, within HMPREF1078_RS01685 at 424.551 kb on + strand, within HMPREF1078_RS01685 at 424.597 kb on + strand at 424.602 kb on + strand at 424.627 kb on + strand at 424.627 kb on + strand at 424.628 kb on - strand at 424.647 kb on + strand at 424.716 kb on - strand at 424.746 kb on + strand at 424.747 kb on - strand at 424.747 kb on - strand at 424.749 kb on + strand at 424.749 kb on + strand at 424.761 kb on + strand at 424.764 kb on + strand at 424.770 kb on + strand at 424.787 kb on + strand at 424.794 kb on + strand at 424.794 kb on + strand at 424.812 kb on + strand at 424.813 kb on - strand at 424.828 kb on + strand at 424.880 kb on + strand at 424.992 kb on - strand at 425.022 kb on + strand at 425.039 kb on + strand, within HMPREF1078_RS01690 at 425.063 kb on + strand, within HMPREF1078_RS01690 at 425.073 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.158 kb on - strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.290 kb on + strand, within HMPREF1078_RS01690 at 425.290 kb on + strand, within HMPREF1078_RS01690 at 425.291 kb on - strand, within HMPREF1078_RS01690 at 425.291 kb on - strand, within HMPREF1078_RS01690 at 425.316 kb on + strand, within HMPREF1078_RS01690 at 425.317 kb on - strand, within HMPREF1078_RS01690 at 425.347 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.349 kb on - strand, within HMPREF1078_RS01690 at 425.349 kb on - strand, within HMPREF1078_RS01690 at 425.440 kb on + strand, within HMPREF1078_RS01690 at 425.549 kb on + strand, within HMPREF1078_RS01690 at 425.550 kb on - strand, within HMPREF1078_RS01690 at 425.691 kb on + strand, within HMPREF1078_RS01690 at 425.715 kb on + strand, within HMPREF1078_RS01690 at 425.715 kb on + strand, within HMPREF1078_RS01690 at 425.970 kb on + strand, within HMPREF1078_RS01690 at 425.977 kb on + strand, within HMPREF1078_RS01690 at 425.977 kb on + strand, within HMPREF1078_RS01690 at 425.979 kb on + strand, within HMPREF1078_RS01690 at 425.979 kb on + strand, within HMPREF1078_RS01690 at 425.980 kb on - strand, within HMPREF1078_RS01690 at 425.980 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 426.081 kb on + strand, within HMPREF1078_RS01690 at 426.082 kb on - strand, within HMPREF1078_RS01690 at 426.103 kb on + strand, within HMPREF1078_RS01690 at 426.103 kb on + strand, within HMPREF1078_RS01690 at 426.104 kb on - strand, within HMPREF1078_RS01690 at 426.111 kb on - strand, within HMPREF1078_RS01690 at 426.126 kb on + strand, within HMPREF1078_RS01690 at 426.139 kb on - strand, within HMPREF1078_RS01690 at 426.156 kb on + strand, within HMPREF1078_RS01690 at 426.253 kb on - strand, within HMPREF1078_RS01690 at 426.277 kb on - strand at 426.315 kb on + strand at 426.326 kb on - strand at 426.327 kb on + strand at 426.327 kb on + strand at 426.327 kb on + strand at 426.328 kb on - strand at 426.513 kb on + strand, within HMPREF1078_RS01695 at 426.513 kb on + strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.517 kb on + strand, within HMPREF1078_RS01695 at 426.517 kb on + strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.523 kb on - strand, within HMPREF1078_RS01695 at 426.525 kb on + strand, within HMPREF1078_RS01695 at 426.525 kb on + strand, within HMPREF1078_RS01695 at 426.526 kb on - strand, within HMPREF1078_RS01695 at 426.526 kb on - strand, within HMPREF1078_RS01695 at 426.527 kb on + strand, within HMPREF1078_RS01695 at 426.528 kb on - strand, within HMPREF1078_RS01695 at 426.632 kb on - strand, within HMPREF1078_RS01695 at 426.643 kb on + strand, within HMPREF1078_RS01695 at 426.646 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.738 kb on + strand, within HMPREF1078_RS01695 at 426.776 kb on - strand, within HMPREF1078_RS01695 at 426.799 kb on + strand at 426.815 kb on - strand at 426.828 kb on - strand at 426.828 kb on - strand at 426.869 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.881 kb on + strand at 426.882 kb on - strand at 427.176 kb on - strand, within HMPREF1078_RS01700 at 427.214 kb on + strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.244 kb on - strand, within HMPREF1078_RS01700 at 427.296 kb on + strand, within HMPREF1078_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 423,881 - -0.2 423,881 - +0.2 423,886 + +0.8 423,887 - +3.6 423,887 - +2.4 423,888 + +1.4 423,888 + +1.5 423,889 - +3.4 423,889 - +1.7 423,889 - +2.2 423,890 + +1.1 423,890 + +1.8 423,890 + +1.4 423,890 + +0.8 423,890 + +2.4 423,891 - -0.1 423,891 - +1.9 423,891 - +0.6 423,891 - +1.1 423,891 - +0.8 423,891 - +2.7 423,891 - -0.6 423,894 + +2.4 423,894 + +1.5 423,895 - +0.8 423,895 - +3.0 423,933 + +3.1 423,937 + +1.9 423,937 + +0.4 424,152 + HMPREF1078_RS01685 0.36 +0.6 424,174 - HMPREF1078_RS01685 0.38 +0.6 424,225 + HMPREF1078_RS01685 0.44 -0.1 424,225 + HMPREF1078_RS01685 0.44 +1.8 424,225 + HMPREF1078_RS01685 0.44 +2.9 424,225 + HMPREF1078_RS01685 0.44 +2.4 424,226 - HMPREF1078_RS01685 0.45 -2.2 424,249 + HMPREF1078_RS01685 0.47 -0.5 424,303 + HMPREF1078_RS01685 0.54 +3.2 424,304 - HMPREF1078_RS01685 0.54 +3.0 424,325 + HMPREF1078_RS01685 0.57 +1.1 424,325 + HMPREF1078_RS01685 0.57 +2.1 424,340 + HMPREF1078_RS01685 0.59 -1.5 424,340 + HMPREF1078_RS01685 0.59 +2.0 424,551 + HMPREF1078_RS01685 0.84 +2.7 424,597 + +1.8 424,602 + +1.9 424,627 + +4.7 424,627 + +0.3 424,628 - +1.4 424,647 + +2.3 424,716 - +3.4 424,746 + +0.8 424,747 - +2.9 424,747 - +1.1 424,749 + +1.0 424,749 + +0.5 424,761 + -2.5 424,764 + +1.0 424,770 + +0.5 424,787 + -0.9 424,794 + -1.1 424,794 + -1.3 424,812 + -1.5 424,813 - -0.9 424,828 + +1.3 424,880 + -0.8 424,992 - +1.8 425,022 + +2.1 425,039 + HMPREF1078_RS01690 0.11 +0.8 425,063 + HMPREF1078_RS01690 0.13 +0.8 425,073 + HMPREF1078_RS01690 0.13 +2.6 425,103 + HMPREF1078_RS01690 0.15 +0.3 425,103 + HMPREF1078_RS01690 0.15 +2.8 425,103 + HMPREF1078_RS01690 0.15 +1.4 425,103 + HMPREF1078_RS01690 0.15 +0.9 425,104 - HMPREF1078_RS01690 0.15 +0.2 425,104 - HMPREF1078_RS01690 0.15 +1.4 425,104 - HMPREF1078_RS01690 0.15 +2.4 425,158 - HMPREF1078_RS01690 0.19 +0.8 425,226 + HMPREF1078_RS01690 0.23 +1.8 425,226 + HMPREF1078_RS01690 0.23 +1.5 425,226 + HMPREF1078_RS01690 0.23 +0.6 425,226 + HMPREF1078_RS01690 0.23 +1.5 425,226 + HMPREF1078_RS01690 0.23 -0.2 425,290 + HMPREF1078_RS01690 0.27 +1.9 425,290 + HMPREF1078_RS01690 0.27 +2.7 425,291 - HMPREF1078_RS01690 0.27 +1.4 425,291 - HMPREF1078_RS01690 0.27 +1.4 425,316 + HMPREF1078_RS01690 0.29 -0.9 425,317 - HMPREF1078_RS01690 0.29 +0.8 425,347 + HMPREF1078_RS01690 0.31 +1.1 425,348 + HMPREF1078_RS01690 0.31 +0.7 425,348 + HMPREF1078_RS01690 0.31 +2.0 425,348 + HMPREF1078_RS01690 0.31 +1.5 425,349 - HMPREF1078_RS01690 0.31 +4.0 425,349 - HMPREF1078_RS01690 0.31 -0.6 425,440 + HMPREF1078_RS01690 0.37 +2.4 425,549 + HMPREF1078_RS01690 0.44 +2.2 425,550 - HMPREF1078_RS01690 0.44 -0.8 425,691 + HMPREF1078_RS01690 0.53 +4.0 425,715 + HMPREF1078_RS01690 0.55 +1.8 425,715 + HMPREF1078_RS01690 0.55 +4.3 425,970 + HMPREF1078_RS01690 0.71 +0.8 425,977 + HMPREF1078_RS01690 0.71 +0.1 425,977 + HMPREF1078_RS01690 0.71 +0.8 425,979 + HMPREF1078_RS01690 0.72 +1.6 425,979 + HMPREF1078_RS01690 0.72 +5.4 425,980 - HMPREF1078_RS01690 0.72 +0.1 425,980 - HMPREF1078_RS01690 0.72 +1.4 425,982 - HMPREF1078_RS01690 0.72 +0.1 425,982 - HMPREF1078_RS01690 0.72 +1.2 425,982 - HMPREF1078_RS01690 0.72 -0.1 425,982 - HMPREF1078_RS01690 0.72 +1.4 426,081 + HMPREF1078_RS01690 0.78 +0.2 426,082 - HMPREF1078_RS01690 0.78 +1.4 426,103 + HMPREF1078_RS01690 0.80 +1.9 426,103 + HMPREF1078_RS01690 0.80 +1.9 426,104 - HMPREF1078_RS01690 0.80 +0.1 426,111 - HMPREF1078_RS01690 0.80 -1.2 426,126 + HMPREF1078_RS01690 0.81 +1.1 426,139 - HMPREF1078_RS01690 0.82 +2.4 426,156 + HMPREF1078_RS01690 0.83 +2.5 426,253 - HMPREF1078_RS01690 0.89 -0.4 426,277 - +0.8 426,315 + +1.5 426,326 - +2.4 426,327 + +3.1 426,327 + +1.1 426,327 + +2.6 426,328 - +0.8 426,513 + HMPREF1078_RS01695 0.16 -2.2 426,513 + HMPREF1078_RS01695 0.16 -2.4 426,514 - HMPREF1078_RS01695 0.16 +0.4 426,514 - HMPREF1078_RS01695 0.16 +0.8 426,514 - HMPREF1078_RS01695 0.16 +0.1 426,514 - HMPREF1078_RS01695 0.16 -0.9 426,515 + HMPREF1078_RS01695 0.16 -0.7 426,515 + HMPREF1078_RS01695 0.16 -1.4 426,515 + HMPREF1078_RS01695 0.16 +2.4 426,515 + HMPREF1078_RS01695 0.16 +1.4 426,515 + HMPREF1078_RS01695 0.16 +0.6 426,517 + HMPREF1078_RS01695 0.17 -2.5 426,517 + HMPREF1078_RS01695 0.17 +0.5 426,518 - HMPREF1078_RS01695 0.17 -1.1 426,518 - HMPREF1078_RS01695 0.17 +0.8 426,518 - HMPREF1078_RS01695 0.17 +4.0 426,522 + HMPREF1078_RS01695 0.18 -1.2 426,522 + HMPREF1078_RS01695 0.18 +1.2 426,522 + HMPREF1078_RS01695 0.18 -0.6 426,523 - HMPREF1078_RS01695 0.19 +0.8 426,525 + HMPREF1078_RS01695 0.19 -3.6 426,525 + HMPREF1078_RS01695 0.19 +1.1 426,526 - HMPREF1078_RS01695 0.19 +0.1 426,526 - HMPREF1078_RS01695 0.19 +2.4 426,527 + HMPREF1078_RS01695 0.20 +0.4 426,528 - HMPREF1078_RS01695 0.20 +2.4 426,632 - HMPREF1078_RS01695 0.48 +0.1 426,643 + HMPREF1078_RS01695 0.51 -1.3 426,646 + HMPREF1078_RS01695 0.52 +1.6 426,685 + HMPREF1078_RS01695 0.63 +0.4 426,685 + HMPREF1078_RS01695 0.63 -0.8 426,685 + HMPREF1078_RS01695 0.63 -1.3 426,685 + HMPREF1078_RS01695 0.63 -2.5 426,685 + HMPREF1078_RS01695 0.63 -0.5 426,685 + HMPREF1078_RS01695 0.63 +0.4 426,686 - HMPREF1078_RS01695 0.63 +1.2 426,686 - HMPREF1078_RS01695 0.63 +0.8 426,686 - HMPREF1078_RS01695 0.63 -0.2 426,738 + HMPREF1078_RS01695 0.77 -2.2 426,776 - HMPREF1078_RS01695 0.88 +1.2 426,799 + -0.3 426,815 - +0.8 426,828 - +0.8 426,828 - +0.4 426,869 + +0.6 426,876 + +1.0 426,876 + +0.7 426,876 + +4.0 426,876 + +4.0 426,881 + -0.8 426,882 - +3.0 427,176 - HMPREF1078_RS01700 0.49 +0.8 427,214 + HMPREF1078_RS01700 0.56 +0.9 427,215 - HMPREF1078_RS01700 0.56 +2.4 427,215 - HMPREF1078_RS01700 0.56 -0.4 427,243 + HMPREF1078_RS01700 0.61 +1.4 427,243 + HMPREF1078_RS01700 0.61 +1.0 427,244 - HMPREF1078_RS01700 0.61 +0.8 427,296 + HMPREF1078_RS01700 0.70 +1.1
Or see this region's nucleotide sequence