Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01360 and HMPREF1078_RS01365 are separated by 11 nucleotides HMPREF1078_RS01365 and HMPREF1078_RS01370 are separated by 254 nucleotides
HMPREF1078_RS01360: HMPREF1078_RS01360 - efflux RND transporter permease subunit, at 349,610 to 352,804
_RS01360
HMPREF1078_RS01365: HMPREF1078_RS01365 - efflux RND transporter periplasmic adaptor subunit, at 352,816 to 353,922
_RS01365
HMPREF1078_RS01370: HMPREF1078_RS01370 - alkaline phosphatase, at 354,177 to 355,871
_RS01370
Position (kb) 352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 351.856 kb on + strand, within HMPREF1078_RS01360 at 351.856 kb on + strand, within HMPREF1078_RS01360 at 351.857 kb on - strand, within HMPREF1078_RS01360 at 351.895 kb on + strand, within HMPREF1078_RS01360 at 351.914 kb on - strand, within HMPREF1078_RS01360 at 351.930 kb on - strand, within HMPREF1078_RS01360 at 352.031 kb on + strand, within HMPREF1078_RS01360 at 352.066 kb on + strand, within HMPREF1078_RS01360 at 352.105 kb on - strand, within HMPREF1078_RS01360 at 352.105 kb on - strand, within HMPREF1078_RS01360 at 352.114 kb on + strand, within HMPREF1078_RS01360 at 352.114 kb on + strand, within HMPREF1078_RS01360 at 352.114 kb on + strand, within HMPREF1078_RS01360 at 352.114 kb on + strand, within HMPREF1078_RS01360 at 352.114 kb on + strand, within HMPREF1078_RS01360 at 352.115 kb on - strand, within HMPREF1078_RS01360 at 352.115 kb on - strand, within HMPREF1078_RS01360 at 352.115 kb on - strand, within HMPREF1078_RS01360 at 352.115 kb on - strand, within HMPREF1078_RS01360 at 352.116 kb on + strand, within HMPREF1078_RS01360 at 352.117 kb on - strand, within HMPREF1078_RS01360 at 352.181 kb on + strand, within HMPREF1078_RS01360 at 352.185 kb on - strand, within HMPREF1078_RS01360 at 352.185 kb on - strand, within HMPREF1078_RS01360 at 352.247 kb on - strand, within HMPREF1078_RS01360 at 352.252 kb on + strand, within HMPREF1078_RS01360 at 352.252 kb on + strand, within HMPREF1078_RS01360 at 352.253 kb on - strand, within HMPREF1078_RS01360 at 352.253 kb on - strand, within HMPREF1078_RS01360 at 352.255 kb on + strand, within HMPREF1078_RS01360 at 352.256 kb on - strand, within HMPREF1078_RS01360 at 352.256 kb on - strand, within HMPREF1078_RS01360 at 352.256 kb on - strand, within HMPREF1078_RS01360 at 352.257 kb on + strand, within HMPREF1078_RS01360 at 352.257 kb on + strand, within HMPREF1078_RS01360 at 352.257 kb on + strand, within HMPREF1078_RS01360 at 352.257 kb on + strand, within HMPREF1078_RS01360 at 352.258 kb on - strand, within HMPREF1078_RS01360 at 352.258 kb on - strand, within HMPREF1078_RS01360 at 352.258 kb on - strand, within HMPREF1078_RS01360 at 352.258 kb on - strand, within HMPREF1078_RS01360 at 352.258 kb on - strand, within HMPREF1078_RS01360 at 352.258 kb on - strand, within HMPREF1078_RS01360 at 352.262 kb on - strand, within HMPREF1078_RS01360 at 352.278 kb on - strand, within HMPREF1078_RS01360 at 352.278 kb on - strand, within HMPREF1078_RS01360 at 352.298 kb on - strand, within HMPREF1078_RS01360 at 352.306 kb on + strand, within HMPREF1078_RS01360 at 352.306 kb on + strand, within HMPREF1078_RS01360 at 352.307 kb on - strand, within HMPREF1078_RS01360 at 352.482 kb on - strand, within HMPREF1078_RS01360 at 352.524 kb on + strand at 352.524 kb on + strand at 352.525 kb on - strand at 352.526 kb on + strand at 352.573 kb on - strand at 352.573 kb on - strand at 352.573 kb on - strand at 352.619 kb on - strand at 352.657 kb on - strand at 352.699 kb on - strand at 352.718 kb on - strand at 352.748 kb on - strand at 352.771 kb on + strand at 352.790 kb on + strand at 352.793 kb on - strand at 352.804 kb on + strand at 352.805 kb on - strand at 352.805 kb on - strand at 352.822 kb on - strand at 352.840 kb on + strand at 352.841 kb on - strand at 352.894 kb on + strand at 352.894 kb on + strand at 352.899 kb on + strand at 352.899 kb on + strand at 352.899 kb on + strand at 352.900 kb on - strand at 352.901 kb on + strand at 352.932 kb on + strand, within HMPREF1078_RS01365 at 352.933 kb on - strand, within HMPREF1078_RS01365 at 352.933 kb on - strand, within HMPREF1078_RS01365 at 352.969 kb on - strand, within HMPREF1078_RS01365 at 352.970 kb on + strand, within HMPREF1078_RS01365 at 353.017 kb on + strand, within HMPREF1078_RS01365 at 353.018 kb on - strand, within HMPREF1078_RS01365 at 353.031 kb on + strand, within HMPREF1078_RS01365 at 353.032 kb on + strand, within HMPREF1078_RS01365 at 353.032 kb on - strand, within HMPREF1078_RS01365 at 353.033 kb on + strand, within HMPREF1078_RS01365 at 353.033 kb on + strand, within HMPREF1078_RS01365 at 353.108 kb on - strand, within HMPREF1078_RS01365 at 353.174 kb on + strand, within HMPREF1078_RS01365 at 353.175 kb on - strand, within HMPREF1078_RS01365 at 353.178 kb on + strand, within HMPREF1078_RS01365 at 353.288 kb on + strand, within HMPREF1078_RS01365 at 353.288 kb on + strand, within HMPREF1078_RS01365 at 353.289 kb on - strand, within HMPREF1078_RS01365 at 353.294 kb on + strand, within HMPREF1078_RS01365 at 353.294 kb on + strand, within HMPREF1078_RS01365 at 353.294 kb on + strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.295 kb on - strand, within HMPREF1078_RS01365 at 353.376 kb on + strand, within HMPREF1078_RS01365 at 353.412 kb on + strand, within HMPREF1078_RS01365 at 353.412 kb on + strand, within HMPREF1078_RS01365 at 353.413 kb on - strand, within HMPREF1078_RS01365 at 353.413 kb on - strand, within HMPREF1078_RS01365 at 353.413 kb on - strand, within HMPREF1078_RS01365 at 353.414 kb on + strand, within HMPREF1078_RS01365 at 353.414 kb on + strand, within HMPREF1078_RS01365 at 353.483 kb on + strand, within HMPREF1078_RS01365 at 353.483 kb on + strand, within HMPREF1078_RS01365 at 353.483 kb on + strand, within HMPREF1078_RS01365 at 353.536 kb on + strand, within HMPREF1078_RS01365 at 353.537 kb on - strand, within HMPREF1078_RS01365 at 353.537 kb on - strand, within HMPREF1078_RS01365 at 353.545 kb on - strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.547 kb on + strand, within HMPREF1078_RS01365 at 353.548 kb on - strand, within HMPREF1078_RS01365 at 353.556 kb on + strand, within HMPREF1078_RS01365 at 353.575 kb on + strand, within HMPREF1078_RS01365 at 353.575 kb on + strand, within HMPREF1078_RS01365 at 353.575 kb on + strand, within HMPREF1078_RS01365 at 353.576 kb on - strand, within HMPREF1078_RS01365 at 353.644 kb on + strand, within HMPREF1078_RS01365 at 353.644 kb on + strand, within HMPREF1078_RS01365 at 353.645 kb on - strand, within HMPREF1078_RS01365 at 353.646 kb on + strand, within HMPREF1078_RS01365 at 353.656 kb on + strand, within HMPREF1078_RS01365 at 353.717 kb on - strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.734 kb on + strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.735 kb on - strand, within HMPREF1078_RS01365 at 353.766 kb on - strand, within HMPREF1078_RS01365 at 353.766 kb on - strand, within HMPREF1078_RS01365 at 353.766 kb on - strand, within HMPREF1078_RS01365 at 353.814 kb on - strand at 353.872 kb on - strand at 353.908 kb on - strand at 353.908 kb on - strand at 353.991 kb on + strand at 353.993 kb on + strand at 353.993 kb on + strand at 353.994 kb on - strand at 353.994 kb on - strand at 353.995 kb on + strand at 353.995 kb on + strand at 353.995 kb on + strand at 353.995 kb on + strand at 353.996 kb on - strand at 353.996 kb on - strand at 354.006 kb on + strand at 354.007 kb on - strand at 354.010 kb on + strand at 354.018 kb on - strand at 354.064 kb on - strand at 354.064 kb on - strand at 354.069 kb on - strand at 354.078 kb on + strand at 354.078 kb on + strand at 354.081 kb on + strand at 354.085 kb on + strand at 354.086 kb on - strand at 354.086 kb on - strand at 354.086 kb on - strand at 354.086 kb on - strand at 354.129 kb on - strand at 354.187 kb on + strand at 354.212 kb on - strand at 354.212 kb on - strand at 354.218 kb on + strand at 354.219 kb on - strand at 354.219 kb on - strand at 354.236 kb on - strand at 354.236 kb on - strand at 354.481 kb on + strand, within HMPREF1078_RS01370 at 354.482 kb on - strand, within HMPREF1078_RS01370 at 354.509 kb on + strand, within HMPREF1078_RS01370 at 354.519 kb on + strand, within HMPREF1078_RS01370 at 354.520 kb on - strand, within HMPREF1078_RS01370 at 354.520 kb on - strand, within HMPREF1078_RS01370 at 354.541 kb on + strand, within HMPREF1078_RS01370 at 354.608 kb on + strand, within HMPREF1078_RS01370 at 354.646 kb on + strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.647 kb on - strand, within HMPREF1078_RS01370 at 354.649 kb on - strand, within HMPREF1078_RS01370 at 354.891 kb on - strand, within HMPREF1078_RS01370 at 354.891 kb on - strand, within HMPREF1078_RS01370
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 351,856 + HMPREF1078_RS01360 0.70 -1.7 351,856 + HMPREF1078_RS01360 0.70 -1.3 351,857 - HMPREF1078_RS01360 0.70 -0.6 351,895 + HMPREF1078_RS01360 0.72 -1.4 351,914 - HMPREF1078_RS01360 0.72 +1.4 351,930 - HMPREF1078_RS01360 0.73 -0.4 352,031 + HMPREF1078_RS01360 0.76 +0.3 352,066 + HMPREF1078_RS01360 0.77 -0.9 352,105 - HMPREF1078_RS01360 0.78 -0.4 352,105 - HMPREF1078_RS01360 0.78 -0.1 352,114 + HMPREF1078_RS01360 0.78 +0.4 352,114 + HMPREF1078_RS01360 0.78 +2.0 352,114 + HMPREF1078_RS01360 0.78 -0.6 352,114 + HMPREF1078_RS01360 0.78 -0.6 352,114 + HMPREF1078_RS01360 0.78 -0.2 352,115 - HMPREF1078_RS01360 0.78 +0.1 352,115 - HMPREF1078_RS01360 0.78 -1.4 352,115 - HMPREF1078_RS01360 0.78 -0.1 352,115 - HMPREF1078_RS01360 0.78 -2.9 352,116 + HMPREF1078_RS01360 0.78 -0.7 352,117 - HMPREF1078_RS01360 0.78 -1.3 352,181 + HMPREF1078_RS01360 0.80 +3.0 352,185 - HMPREF1078_RS01360 0.81 -0.0 352,185 - HMPREF1078_RS01360 0.81 +0.6 352,247 - HMPREF1078_RS01360 0.83 -1.3 352,252 + HMPREF1078_RS01360 0.83 +0.8 352,252 + HMPREF1078_RS01360 0.83 +2.4 352,253 - HMPREF1078_RS01360 0.83 -0.9 352,253 - HMPREF1078_RS01360 0.83 -0.3 352,255 + HMPREF1078_RS01360 0.83 -0.2 352,256 - HMPREF1078_RS01360 0.83 -2.4 352,256 - HMPREF1078_RS01360 0.83 -0.9 352,256 - HMPREF1078_RS01360 0.83 -0.6 352,257 + HMPREF1078_RS01360 0.83 -0.8 352,257 + HMPREF1078_RS01360 0.83 -0.4 352,257 + HMPREF1078_RS01360 0.83 +0.4 352,257 + HMPREF1078_RS01360 0.83 +0.1 352,258 - HMPREF1078_RS01360 0.83 -0.2 352,258 - HMPREF1078_RS01360 0.83 +2.4 352,258 - HMPREF1078_RS01360 0.83 +0.1 352,258 - HMPREF1078_RS01360 0.83 +0.6 352,258 - HMPREF1078_RS01360 0.83 +0.8 352,258 - HMPREF1078_RS01360 0.83 -1.3 352,262 - HMPREF1078_RS01360 0.83 -1.2 352,278 - HMPREF1078_RS01360 0.84 -1.4 352,278 - HMPREF1078_RS01360 0.84 -0.4 352,298 - HMPREF1078_RS01360 0.84 +0.4 352,306 + HMPREF1078_RS01360 0.84 +0.4 352,306 + HMPREF1078_RS01360 0.84 -1.1 352,307 - HMPREF1078_RS01360 0.84 +0.6 352,482 - HMPREF1078_RS01360 0.90 +1.4 352,524 + -1.3 352,524 + -0.6 352,525 - -0.9 352,526 + +2.4 352,573 - -1.4 352,573 - +0.8 352,573 - +0.9 352,619 - -0.6 352,657 - -2.5 352,699 - -0.1 352,718 - -0.9 352,748 - +0.1 352,771 + -2.5 352,790 + -1.7 352,793 - -0.2 352,804 + -2.6 352,805 - -0.8 352,805 - -0.4 352,822 - -1.5 352,840 + -2.1 352,841 - -1.1 352,894 + -2.1 352,894 + -0.8 352,899 + +0.1 352,899 + +0.8 352,899 + -0.9 352,900 - -1.1 352,901 + +0.1 352,932 + HMPREF1078_RS01365 0.10 -0.6 352,933 - HMPREF1078_RS01365 0.11 +0.4 352,933 - HMPREF1078_RS01365 0.11 +0.1 352,969 - HMPREF1078_RS01365 0.14 +1.4 352,970 + HMPREF1078_RS01365 0.14 +1.4 353,017 + HMPREF1078_RS01365 0.18 -0.5 353,018 - HMPREF1078_RS01365 0.18 -1.5 353,031 + HMPREF1078_RS01365 0.19 -1.2 353,032 + HMPREF1078_RS01365 0.20 -1.1 353,032 - HMPREF1078_RS01365 0.20 -0.9 353,033 + HMPREF1078_RS01365 0.20 -0.4 353,033 + HMPREF1078_RS01365 0.20 +0.8 353,108 - HMPREF1078_RS01365 0.26 -0.2 353,174 + HMPREF1078_RS01365 0.32 +1.4 353,175 - HMPREF1078_RS01365 0.32 -0.9 353,178 + HMPREF1078_RS01365 0.33 -2.1 353,288 + HMPREF1078_RS01365 0.43 +2.4 353,288 + HMPREF1078_RS01365 0.43 +1.4 353,289 - HMPREF1078_RS01365 0.43 -1.1 353,294 + HMPREF1078_RS01365 0.43 +0.1 353,294 + HMPREF1078_RS01365 0.43 +0.1 353,294 + HMPREF1078_RS01365 0.43 -0.6 353,295 - HMPREF1078_RS01365 0.43 +2.4 353,295 - HMPREF1078_RS01365 0.43 -1.2 353,295 - HMPREF1078_RS01365 0.43 -0.5 353,295 - HMPREF1078_RS01365 0.43 -1.9 353,376 + HMPREF1078_RS01365 0.51 +0.8 353,412 + HMPREF1078_RS01365 0.54 -0.2 353,412 + HMPREF1078_RS01365 0.54 -1.6 353,413 - HMPREF1078_RS01365 0.54 -1.9 353,413 - HMPREF1078_RS01365 0.54 -0.8 353,413 - HMPREF1078_RS01365 0.54 -2.4 353,414 + HMPREF1078_RS01365 0.54 -1.1 353,414 + HMPREF1078_RS01365 0.54 -1.4 353,483 + HMPREF1078_RS01365 0.60 -2.8 353,483 + HMPREF1078_RS01365 0.60 -0.8 353,483 + HMPREF1078_RS01365 0.60 -1.6 353,536 + HMPREF1078_RS01365 0.65 -0.6 353,537 - HMPREF1078_RS01365 0.65 -3.2 353,537 - HMPREF1078_RS01365 0.65 -1.9 353,545 - HMPREF1078_RS01365 0.66 +0.8 353,547 + HMPREF1078_RS01365 0.66 -3.2 353,547 + HMPREF1078_RS01365 0.66 +3.4 353,547 + HMPREF1078_RS01365 0.66 -1.5 353,547 + HMPREF1078_RS01365 0.66 -2.5 353,548 - HMPREF1078_RS01365 0.66 +1.4 353,556 + HMPREF1078_RS01365 0.67 -0.3 353,575 + HMPREF1078_RS01365 0.69 -0.2 353,575 + HMPREF1078_RS01365 0.69 -0.9 353,575 + HMPREF1078_RS01365 0.69 -1.0 353,576 - HMPREF1078_RS01365 0.69 -0.9 353,644 + HMPREF1078_RS01365 0.75 +1.8 353,644 + HMPREF1078_RS01365 0.75 +0.4 353,645 - HMPREF1078_RS01365 0.75 -0.6 353,646 + HMPREF1078_RS01365 0.75 -0.9 353,656 + HMPREF1078_RS01365 0.76 -1.1 353,717 - HMPREF1078_RS01365 0.81 -0.2 353,734 + HMPREF1078_RS01365 0.83 +1.4 353,734 + HMPREF1078_RS01365 0.83 +0.1 353,734 + HMPREF1078_RS01365 0.83 +0.8 353,735 - HMPREF1078_RS01365 0.83 -1.1 353,735 - HMPREF1078_RS01365 0.83 -0.8 353,735 - HMPREF1078_RS01365 0.83 -0.9 353,735 - HMPREF1078_RS01365 0.83 -1.4 353,766 - HMPREF1078_RS01365 0.86 -2.5 353,766 - HMPREF1078_RS01365 0.86 -1.2 353,766 - HMPREF1078_RS01365 0.86 -0.9 353,814 - +1.4 353,872 - +0.1 353,908 - +1.1 353,908 - -0.8 353,991 + -0.6 353,993 + -0.9 353,993 + -1.1 353,994 - -2.7 353,994 - -0.4 353,995 + -1.5 353,995 + -1.3 353,995 + +0.4 353,995 + -0.9 353,996 - +0.2 353,996 - +2.4 354,006 + -2.5 354,007 - -1.9 354,010 + -1.3 354,018 - +0.8 354,064 - +0.6 354,064 - -0.6 354,069 - -0.4 354,078 + -2.3 354,078 + +0.6 354,081 + -0.4 354,085 + -0.9 354,086 - -0.6 354,086 - +0.8 354,086 - +0.1 354,086 - +0.4 354,129 - +0.5 354,187 + -1.5 354,212 - +0.4 354,212 - -0.2 354,218 + -1.2 354,219 - -1.3 354,219 - -0.9 354,236 - -1.9 354,236 - -1.3 354,481 + HMPREF1078_RS01370 0.18 -0.2 354,482 - HMPREF1078_RS01370 0.18 -1.4 354,509 + HMPREF1078_RS01370 0.20 -0.8 354,519 + HMPREF1078_RS01370 0.20 +0.1 354,520 - HMPREF1078_RS01370 0.20 -1.0 354,520 - HMPREF1078_RS01370 0.20 -2.1 354,541 + HMPREF1078_RS01370 0.21 -0.2 354,608 + HMPREF1078_RS01370 0.25 -0.2 354,646 + HMPREF1078_RS01370 0.28 -2.1 354,647 - HMPREF1078_RS01370 0.28 -2.6 354,647 - HMPREF1078_RS01370 0.28 +0.4 354,647 - HMPREF1078_RS01370 0.28 -1.8 354,647 - HMPREF1078_RS01370 0.28 -2.2 354,649 - HMPREF1078_RS01370 0.28 -0.8 354,891 - HMPREF1078_RS01370 0.42 +1.1 354,891 - HMPREF1078_RS01370 0.42 +0.1
Or see this region's nucleotide sequence