Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01260

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01255 and HMPREF1078_RS01260 are separated by 103 nucleotidesHMPREF1078_RS01260 and HMPREF1078_RS01265 are separated by 26 nucleotides HMPREF1078_RS01255: HMPREF1078_RS01255 - PL29 family lyase N-terminal domain-containing protein, at 316,401 to 318,356 _RS01255 HMPREF1078_RS01260: HMPREF1078_RS01260 - asparagine synthase B, at 318,460 to 320,124 _RS01260 HMPREF1078_RS01265: HMPREF1078_RS01265 - glutamate synthase subunit beta, at 320,151 to 321,584 _RS01265 Position (kb) 318 319 320 321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.465 kb on + strand, within HMPREF1078_RS01255at 317.507 kb on + strand, within HMPREF1078_RS01255at 317.507 kb on + strand, within HMPREF1078_RS01255at 317.513 kb on + strand, within HMPREF1078_RS01255at 317.513 kb on + strand, within HMPREF1078_RS01255at 317.514 kb on - strand, within HMPREF1078_RS01255at 317.561 kb on + strand, within HMPREF1078_RS01255at 317.573 kb on - strand, within HMPREF1078_RS01255at 317.583 kb on + strand, within HMPREF1078_RS01255at 317.584 kb on - strand, within HMPREF1078_RS01255at 317.694 kb on + strand, within HMPREF1078_RS01255at 317.694 kb on + strand, within HMPREF1078_RS01255at 317.726 kb on + strand, within HMPREF1078_RS01255at 317.726 kb on + strand, within HMPREF1078_RS01255at 317.726 kb on + strand, within HMPREF1078_RS01255at 317.726 kb on + strand, within HMPREF1078_RS01255at 317.726 kb on + strand, within HMPREF1078_RS01255at 317.727 kb on - strand, within HMPREF1078_RS01255at 317.730 kb on + strand, within HMPREF1078_RS01255at 317.730 kb on + strand, within HMPREF1078_RS01255at 317.731 kb on - strand, within HMPREF1078_RS01255at 317.740 kb on - strand, within HMPREF1078_RS01255at 317.740 kb on - strand, within HMPREF1078_RS01255at 317.742 kb on - strand, within HMPREF1078_RS01255at 317.809 kb on - strand, within HMPREF1078_RS01255at 317.811 kb on - strand, within HMPREF1078_RS01255at 317.844 kb on + strand, within HMPREF1078_RS01255at 317.844 kb on + strand, within HMPREF1078_RS01255at 317.845 kb on - strand, within HMPREF1078_RS01255at 317.891 kb on - strand, within HMPREF1078_RS01255at 317.891 kb on - strand, within HMPREF1078_RS01255at 317.903 kb on + strand, within HMPREF1078_RS01255at 317.903 kb on + strand, within HMPREF1078_RS01255at 317.904 kb on - strand, within HMPREF1078_RS01255at 317.934 kb on - strand, within HMPREF1078_RS01255at 317.959 kb on + strand, within HMPREF1078_RS01255at 317.970 kb on + strand, within HMPREF1078_RS01255at 317.970 kb on + strand, within HMPREF1078_RS01255at 317.971 kb on - strand, within HMPREF1078_RS01255at 317.989 kb on - strand, within HMPREF1078_RS01255at 317.991 kb on - strand, within HMPREF1078_RS01255at 318.023 kb on + strand, within HMPREF1078_RS01255at 318.035 kb on + strand, within HMPREF1078_RS01255at 318.098 kb on + strand, within HMPREF1078_RS01255at 318.099 kb on - strand, within HMPREF1078_RS01255at 318.102 kb on - strand, within HMPREF1078_RS01255at 318.132 kb on + strand, within HMPREF1078_RS01255at 318.179 kb on + strandat 318.185 kb on + strandat 318.264 kb on + strandat 318.265 kb on - strandat 318.284 kb on + strandat 318.284 kb on + strandat 318.285 kb on - strandat 318.290 kb on + strandat 318.293 kb on + strandat 318.294 kb on - strandat 318.294 kb on - strandat 318.328 kb on - strandat 318.416 kb on - strandat 318.418 kb on - strandat 318.418 kb on - strandat 318.418 kb on - strandat 318.422 kb on + strandat 318.464 kb on + strandat 318.465 kb on - strandat 318.638 kb on + strand, within HMPREF1078_RS01260at 318.639 kb on - strand, within HMPREF1078_RS01260at 318.947 kb on - strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.974 kb on + strand, within HMPREF1078_RS01260at 318.975 kb on - strand, within HMPREF1078_RS01260at 318.975 kb on - strand, within HMPREF1078_RS01260at 318.975 kb on - strand, within HMPREF1078_RS01260at 318.978 kb on + strand, within HMPREF1078_RS01260at 318.979 kb on - strand, within HMPREF1078_RS01260at 318.980 kb on + strand, within HMPREF1078_RS01260at 318.980 kb on + strand, within HMPREF1078_RS01260at 319.100 kb on - strand, within HMPREF1078_RS01260at 319.118 kb on - strand, within HMPREF1078_RS01260at 319.134 kb on - strand, within HMPREF1078_RS01260at 319.134 kb on - strand, within HMPREF1078_RS01260at 319.169 kb on + strand, within HMPREF1078_RS01260at 319.169 kb on + strand, within HMPREF1078_RS01260at 319.169 kb on + strand, within HMPREF1078_RS01260at 319.181 kb on + strand, within HMPREF1078_RS01260at 319.184 kb on + strand, within HMPREF1078_RS01260at 319.437 kb on - strand, within HMPREF1078_RS01260at 319.530 kb on - strand, within HMPREF1078_RS01260at 319.549 kb on - strand, within HMPREF1078_RS01260at 319.550 kb on + strand, within HMPREF1078_RS01260at 319.550 kb on + strand, within HMPREF1078_RS01260at 319.551 kb on - strand, within HMPREF1078_RS01260at 319.586 kb on + strand, within HMPREF1078_RS01260at 319.587 kb on - strand, within HMPREF1078_RS01260at 319.851 kb on - strand, within HMPREF1078_RS01260at 319.887 kb on + strand, within HMPREF1078_RS01260at 319.887 kb on + strand, within HMPREF1078_RS01260at 319.888 kb on - strand, within HMPREF1078_RS01260at 319.891 kb on + strand, within HMPREF1078_RS01260at 319.892 kb on - strand, within HMPREF1078_RS01260at 320.092 kb on - strandat 320.113 kb on - strandat 320.131 kb on + strandat 320.145 kb on + strandat 320.174 kb on - strandat 320.264 kb on + strandat 320.265 kb on - strandat 320.265 kb on - strandat 321.079 kb on - strand, within HMPREF1078_RS01265

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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317,465 + HMPREF1078_RS01255 0.54 -1.6
317,465 + HMPREF1078_RS01255 0.54 +0.8
317,465 + HMPREF1078_RS01255 0.54 -3.0
317,465 + HMPREF1078_RS01255 0.54 -1.3
317,465 + HMPREF1078_RS01255 0.54 -1.7
317,465 + HMPREF1078_RS01255 0.54 +0.0
317,465 + HMPREF1078_RS01255 0.54 +2.4
317,465 + HMPREF1078_RS01255 0.54 -2.0
317,507 + HMPREF1078_RS01255 0.57 -1.2
317,507 + HMPREF1078_RS01255 0.57 +0.5
317,513 + HMPREF1078_RS01255 0.57 +1.2
317,513 + HMPREF1078_RS01255 0.57 +0.2
317,514 - HMPREF1078_RS01255 0.57 -1.3
317,561 + HMPREF1078_RS01255 0.59 -0.6
317,573 - HMPREF1078_RS01255 0.60 +2.4
317,583 + HMPREF1078_RS01255 0.60 -1.0
317,584 - HMPREF1078_RS01255 0.60 +0.7
317,694 + HMPREF1078_RS01255 0.66 +0.8
317,694 + HMPREF1078_RS01255 0.66 +0.9
317,726 + HMPREF1078_RS01255 0.68 -1.0
317,726 + HMPREF1078_RS01255 0.68 +0.2
317,726 + HMPREF1078_RS01255 0.68 -1.1
317,726 + HMPREF1078_RS01255 0.68 +0.8
317,726 + HMPREF1078_RS01255 0.68 +0.7
317,727 - HMPREF1078_RS01255 0.68 -1.6
317,730 + HMPREF1078_RS01255 0.68 +1.7
317,730 + HMPREF1078_RS01255 0.68 -1.5
317,731 - HMPREF1078_RS01255 0.68 -1.2
317,740 - HMPREF1078_RS01255 0.68 +0.0
317,740 - HMPREF1078_RS01255 0.68 +1.7
317,742 - HMPREF1078_RS01255 0.69 -0.8
317,809 - HMPREF1078_RS01255 0.72 -0.2
317,811 - HMPREF1078_RS01255 0.72 +1.4
317,844 + HMPREF1078_RS01255 0.74 +1.4
317,844 + HMPREF1078_RS01255 0.74 -1.5
317,845 - HMPREF1078_RS01255 0.74 +0.0
317,891 - HMPREF1078_RS01255 0.76 +0.0
317,891 - HMPREF1078_RS01255 0.76 -0.2
317,903 + HMPREF1078_RS01255 0.77 -0.8
317,903 + HMPREF1078_RS01255 0.77 -0.5
317,904 - HMPREF1078_RS01255 0.77 +0.0
317,934 - HMPREF1078_RS01255 0.78 +0.0
317,959 + HMPREF1078_RS01255 0.80 -1.6
317,970 + HMPREF1078_RS01255 0.80 +0.8
317,970 + HMPREF1078_RS01255 0.80 -0.2
317,971 - HMPREF1078_RS01255 0.80 -1.8
317,989 - HMPREF1078_RS01255 0.81 +0.1
317,991 - HMPREF1078_RS01255 0.81 -1.2
318,023 + HMPREF1078_RS01255 0.83 +0.0
318,035 + HMPREF1078_RS01255 0.84 +0.5
318,098 + HMPREF1078_RS01255 0.87 +1.4
318,099 - HMPREF1078_RS01255 0.87 +1.1
318,102 - HMPREF1078_RS01255 0.87 +0.4
318,132 + HMPREF1078_RS01255 0.88 -0.8
318,179 + -0.8
318,185 + -1.9
318,264 + -2.1
318,265 - +0.4
318,284 + -1.3
318,284 + +0.4
318,285 - -0.5
318,290 + +0.3
318,293 + +0.8
318,294 - -1.2
318,294 - +0.8
318,328 - +2.4
318,416 - +1.4
318,418 - -1.4
318,418 - +1.4
318,418 - -0.5
318,422 + -1.3
318,464 + +2.4
318,465 - -1.6
318,638 + HMPREF1078_RS01260 0.11 -0.6
318,639 - HMPREF1078_RS01260 0.11 +0.4
318,947 - HMPREF1078_RS01260 0.29 -1.8
318,974 + HMPREF1078_RS01260 0.31 +0.8
318,974 + HMPREF1078_RS01260 0.31 +0.0
318,974 + HMPREF1078_RS01260 0.31 +0.0
318,974 + HMPREF1078_RS01260 0.31 -0.6
318,974 + HMPREF1078_RS01260 0.31 +0.0
318,974 + HMPREF1078_RS01260 0.31 -1.9
318,974 + HMPREF1078_RS01260 0.31 -1.2
318,974 + HMPREF1078_RS01260 0.31 -0.8
318,974 + HMPREF1078_RS01260 0.31 -0.5
318,975 - HMPREF1078_RS01260 0.31 -1.0
318,975 - HMPREF1078_RS01260 0.31 -1.6
318,975 - HMPREF1078_RS01260 0.31 -0.8
318,978 + HMPREF1078_RS01260 0.31 +1.2
318,979 - HMPREF1078_RS01260 0.31 -1.6
318,980 + HMPREF1078_RS01260 0.31 -2.1
318,980 + HMPREF1078_RS01260 0.31 +0.4
319,100 - HMPREF1078_RS01260 0.38 -1.6
319,118 - HMPREF1078_RS01260 0.40 -0.2
319,134 - HMPREF1078_RS01260 0.40 +2.4
319,134 - HMPREF1078_RS01260 0.40 -1.1
319,169 + HMPREF1078_RS01260 0.43 +0.0
319,169 + HMPREF1078_RS01260 0.43 -0.2
319,169 + HMPREF1078_RS01260 0.43 +0.4
319,181 + HMPREF1078_RS01260 0.43 -0.2
319,184 + HMPREF1078_RS01260 0.43 -0.8
319,437 - HMPREF1078_RS01260 0.59 +2.9
319,530 - HMPREF1078_RS01260 0.64 -0.6
319,549 - HMPREF1078_RS01260 0.65 -2.6
319,550 + HMPREF1078_RS01260 0.65 -1.0
319,550 + HMPREF1078_RS01260 0.65 -0.5
319,551 - HMPREF1078_RS01260 0.66 +2.4
319,586 + HMPREF1078_RS01260 0.68 -0.6
319,587 - HMPREF1078_RS01260 0.68 +0.7
319,851 - HMPREF1078_RS01260 0.84 +1.6
319,887 + HMPREF1078_RS01260 0.86 +0.4
319,887 + HMPREF1078_RS01260 0.86 +1.1
319,888 - HMPREF1078_RS01260 0.86 +0.4
319,891 + HMPREF1078_RS01260 0.86 +0.0
319,892 - HMPREF1078_RS01260 0.86 -0.2
320,092 - -1.8
320,113 - -1.0
320,131 + +0.1
320,145 + +2.4
320,174 - -2.0
320,264 + +0.8
320,265 - -0.5
320,265 - -1.1
321,079 - HMPREF1078_RS01265 0.65 -0.6

Or see this region's nucleotide sequence