Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00765

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00760 and HMPREF1078_RS00765 are separated by 30 nucleotidesHMPREF1078_RS00765 and HMPREF1078_RS00770 overlap by 8 nucleotidesHMPREF1078_RS00770 and HMPREF1078_RS00775 are separated by 78 nucleotides HMPREF1078_RS00760: HMPREF1078_RS00760 - STN and carboxypeptidase regulatory-like domain-containing protein, at 180,361 to 181,920 _RS00760 HMPREF1078_RS00765: HMPREF1078_RS00765 - FecR domain-containing protein, at 181,951 to 182,799 _RS00765 HMPREF1078_RS00770: HMPREF1078_RS00770 - RNA polymerase sigma-70 factor, at 182,792 to 183,343 _RS00770 HMPREF1078_RS00775: HMPREF1078_RS00775 - carboxypeptidase-like regulatory domain-containing protein, at 183,422 to 184,690 _RS00775 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 181.273 kb on + strand, within HMPREF1078_RS00760at 181.349 kb on - strand, within HMPREF1078_RS00760at 181.369 kb on + strand, within HMPREF1078_RS00760at 181.390 kb on - strand, within HMPREF1078_RS00760at 181.461 kb on + strand, within HMPREF1078_RS00760at 181.475 kb on - strand, within HMPREF1078_RS00760at 181.665 kb on - strand, within HMPREF1078_RS00760at 181.685 kb on + strand, within HMPREF1078_RS00760at 181.685 kb on + strand, within HMPREF1078_RS00760at 181.705 kb on + strand, within HMPREF1078_RS00760at 181.769 kb on - strandat 181.794 kb on + strandat 181.930 kb on + strandat 181.931 kb on - strandat 181.931 kb on - strandat 181.932 kb on + strandat 181.932 kb on + strandat 181.939 kb on - strandat 181.946 kb on - strandat 181.946 kb on - strandat 181.960 kb on + strandat 182.038 kb on - strand, within HMPREF1078_RS00765at 182.038 kb on - strand, within HMPREF1078_RS00765at 182.038 kb on - strand, within HMPREF1078_RS00765at 182.075 kb on - strand, within HMPREF1078_RS00765at 182.075 kb on - strand, within HMPREF1078_RS00765at 182.140 kb on + strand, within HMPREF1078_RS00765at 182.141 kb on - strand, within HMPREF1078_RS00765at 182.173 kb on - strand, within HMPREF1078_RS00765at 182.255 kb on - strand, within HMPREF1078_RS00765at 182.294 kb on - strand, within HMPREF1078_RS00765at 182.332 kb on - strand, within HMPREF1078_RS00765at 182.363 kb on - strand, within HMPREF1078_RS00765at 182.380 kb on - strand, within HMPREF1078_RS00765at 182.396 kb on - strand, within HMPREF1078_RS00765at 182.500 kb on - strand, within HMPREF1078_RS00765at 182.619 kb on - strand, within HMPREF1078_RS00765at 182.619 kb on - strand, within HMPREF1078_RS00765at 182.631 kb on + strand, within HMPREF1078_RS00765at 182.631 kb on + strand, within HMPREF1078_RS00765at 182.631 kb on + strand, within HMPREF1078_RS00765at 182.744 kb on + strandat 182.745 kb on - strandat 182.745 kb on - strandat 182.745 kb on - strandat 182.751 kb on + strandat 182.752 kb on - strandat 182.752 kb on - strandat 182.799 kb on + strandat 182.799 kb on + strandat 182.800 kb on - strandat 182.808 kb on + strandat 182.829 kb on - strandat 183.081 kb on - strand, within HMPREF1078_RS00770at 183.135 kb on + strand, within HMPREF1078_RS00770at 183.162 kb on - strand, within HMPREF1078_RS00770at 183.189 kb on + strand, within HMPREF1078_RS00770at 183.203 kb on + strand, within HMPREF1078_RS00770at 183.203 kb on + strand, within HMPREF1078_RS00770at 183.253 kb on + strand, within HMPREF1078_RS00770at 183.254 kb on - strand, within HMPREF1078_RS00770at 183.254 kb on - strand, within HMPREF1078_RS00770at 183.254 kb on - strand, within HMPREF1078_RS00770at 183.267 kb on + strand, within HMPREF1078_RS00770at 183.270 kb on + strand, within HMPREF1078_RS00770at 183.351 kb on - strandat 183.355 kb on - strandat 183.388 kb on + strandat 183.390 kb on + strandat 183.395 kb on + strandat 183.396 kb on - strandat 183.396 kb on - strandat 183.423 kb on + strandat 183.424 kb on - strandat 183.424 kb on - strandat 183.424 kb on - strandat 183.427 kb on + strandat 183.484 kb on + strandat 183.485 kb on - strandat 183.489 kb on + strandat 183.490 kb on - strandat 183.490 kb on - strandat 183.574 kb on + strand, within HMPREF1078_RS00775at 183.575 kb on - strand, within HMPREF1078_RS00775at 183.630 kb on + strand, within HMPREF1078_RS00775at 183.723 kb on + strand, within HMPREF1078_RS00775

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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181,273 + HMPREF1078_RS00760 0.58 +0.3
181,349 - HMPREF1078_RS00760 0.63 -0.8
181,369 + HMPREF1078_RS00760 0.65 +0.6
181,390 - HMPREF1078_RS00760 0.66 -0.7
181,461 + HMPREF1078_RS00760 0.71 -0.2
181,475 - HMPREF1078_RS00760 0.71 +2.3
181,665 - HMPREF1078_RS00760 0.84 -0.8
181,685 + HMPREF1078_RS00760 0.85 -2.0
181,685 + HMPREF1078_RS00760 0.85 +0.0
181,705 + HMPREF1078_RS00760 0.86 -0.5
181,769 - -0.7
181,794 + -0.1
181,930 + -2.2
181,931 - -1.1
181,931 - -1.7
181,932 + -1.0
181,932 + +0.8
181,939 - -0.8
181,946 - +1.9
181,946 - +0.3
181,960 + -0.7
182,038 - HMPREF1078_RS00765 0.10 -0.5
182,038 - HMPREF1078_RS00765 0.10 -2.5
182,038 - HMPREF1078_RS00765 0.10 -2.0
182,075 - HMPREF1078_RS00765 0.15 -2.6
182,075 - HMPREF1078_RS00765 0.15 -3.0
182,140 + HMPREF1078_RS00765 0.22 -2.4
182,141 - HMPREF1078_RS00765 0.22 -1.1
182,173 - HMPREF1078_RS00765 0.26 -2.2
182,255 - HMPREF1078_RS00765 0.36 -1.6
182,294 - HMPREF1078_RS00765 0.40 -1.4
182,332 - HMPREF1078_RS00765 0.45 -2.1
182,363 - HMPREF1078_RS00765 0.49 -1.6
182,380 - HMPREF1078_RS00765 0.51 -1.1
182,396 - HMPREF1078_RS00765 0.52 -2.1
182,500 - HMPREF1078_RS00765 0.65 -1.1
182,619 - HMPREF1078_RS00765 0.79 -2.8
182,619 - HMPREF1078_RS00765 0.79 -0.7
182,631 + HMPREF1078_RS00765 0.80 -2.1
182,631 + HMPREF1078_RS00765 0.80 -0.2
182,631 + HMPREF1078_RS00765 0.80 +2.3
182,744 + -2.2
182,745 - -3.5
182,745 - -2.2
182,745 - -1.5
182,751 + +1.3
182,752 - -0.8
182,752 - -2.4
182,799 + +0.0
182,799 + -1.6
182,800 - -1.0
182,808 + -0.2
182,829 - -0.8
183,081 - HMPREF1078_RS00770 0.52 -0.2
183,135 + HMPREF1078_RS00770 0.62 +0.8
183,162 - HMPREF1078_RS00770 0.67 -0.8
183,189 + HMPREF1078_RS00770 0.72 +1.9
183,203 + HMPREF1078_RS00770 0.74 +0.2
183,203 + HMPREF1078_RS00770 0.74 +0.9
183,253 + HMPREF1078_RS00770 0.84 -0.2
183,254 - HMPREF1078_RS00770 0.84 -0.7
183,254 - HMPREF1078_RS00770 0.84 -2.2
183,254 - HMPREF1078_RS00770 0.84 -0.9
183,267 + HMPREF1078_RS00770 0.86 +2.1
183,270 + HMPREF1078_RS00770 0.87 +0.3
183,351 - -0.9
183,355 - -0.1
183,388 + +0.8
183,390 + -1.2
183,395 + -0.5
183,396 - +0.3
183,396 - +1.6
183,423 + +0.8
183,424 - +3.9
183,424 - -0.1
183,424 - -2.9
183,427 + +0.5
183,484 + +0.3
183,485 - +0.3
183,489 + -0.8
183,490 - +0.3
183,490 - -1.0
183,574 + HMPREF1078_RS00775 0.12 +1.5
183,575 - HMPREF1078_RS00775 0.12 +0.0
183,630 + HMPREF1078_RS00775 0.16 +0.4
183,723 + HMPREF1078_RS00775 0.24 -1.1

Or see this region's nucleotide sequence