Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15050 and HMPREF1078_RS15055 are separated by 127 nucleotides
HMPREF1078_RS15050: HMPREF1078_RS15050 - VapE family protein, at 67,097 to 69,172
_RS15050
HMPREF1078_RS15055: HMPREF1078_RS15055 - CRISPR-associated helicase/endonuclease Cas3, at 69,300 to 71,525
_RS15055
Position (kb) 69
70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 68.324 kb on - strand, within HMPREF1078_RS15050 at 68.324 kb on - strand, within HMPREF1078_RS15050 at 68.325 kb on + strand, within HMPREF1078_RS15050 at 68.325 kb on + strand, within HMPREF1078_RS15050 at 68.325 kb on + strand, within HMPREF1078_RS15050 at 68.325 kb on + strand, within HMPREF1078_RS15050 at 68.326 kb on - strand, within HMPREF1078_RS15050 at 68.326 kb on - strand, within HMPREF1078_RS15050 at 68.326 kb on - strand, within HMPREF1078_RS15050 at 68.326 kb on - strand, within HMPREF1078_RS15050 at 68.326 kb on - strand, within HMPREF1078_RS15050 at 68.382 kb on - strand, within HMPREF1078_RS15050 at 68.383 kb on + strand, within HMPREF1078_RS15050 at 68.383 kb on + strand, within HMPREF1078_RS15050 at 68.521 kb on + strand, within HMPREF1078_RS15050 at 68.521 kb on + strand, within HMPREF1078_RS15050 at 68.522 kb on - strand, within HMPREF1078_RS15050 at 68.525 kb on + strand, within HMPREF1078_RS15050 at 68.525 kb on + strand, within HMPREF1078_RS15050 at 68.525 kb on + strand, within HMPREF1078_RS15050 at 68.531 kb on - strand, within HMPREF1078_RS15050 at 68.688 kb on - strand, within HMPREF1078_RS15050 at 68.785 kb on + strand, within HMPREF1078_RS15050 at 68.806 kb on + strand, within HMPREF1078_RS15050 at 68.811 kb on + strand, within HMPREF1078_RS15050 at 68.815 kb on + strand, within HMPREF1078_RS15050 at 68.816 kb on - strand, within HMPREF1078_RS15050 at 68.846 kb on + strand, within HMPREF1078_RS15050 at 68.923 kb on + strand, within HMPREF1078_RS15050 at 68.924 kb on - strand, within HMPREF1078_RS15050 at 68.924 kb on - strand, within HMPREF1078_RS15050 at 69.038 kb on + strand at 69.038 kb on + strand at 69.062 kb on - strand at 69.112 kb on + strand at 69.149 kb on + strand at 69.184 kb on + strand at 69.194 kb on + strand at 69.195 kb on - strand at 69.226 kb on - strand at 69.240 kb on + strand at 69.245 kb on + strand at 69.397 kb on + strand at 69.464 kb on + strand at 69.465 kb on - strand at 69.474 kb on + strand at 69.476 kb on + strand at 69.477 kb on - strand at 69.486 kb on - strand at 69.498 kb on + strand at 69.498 kb on + strand at 69.499 kb on - strand at 69.618 kb on + strand, within HMPREF1078_RS15055 at 69.624 kb on - strand, within HMPREF1078_RS15055 at 69.624 kb on - strand, within HMPREF1078_RS15055 at 69.624 kb on - strand, within HMPREF1078_RS15055 at 69.708 kb on + strand, within HMPREF1078_RS15055 at 69.798 kb on - strand, within HMPREF1078_RS15055 at 69.798 kb on - strand, within HMPREF1078_RS15055 at 69.798 kb on - strand, within HMPREF1078_RS15055 at 69.798 kb on - strand, within HMPREF1078_RS15055 at 69.799 kb on + strand, within HMPREF1078_RS15055 at 69.799 kb on + strand, within HMPREF1078_RS15055 at 69.799 kb on + strand, within HMPREF1078_RS15055 at 69.846 kb on + strand, within HMPREF1078_RS15055 at 69.901 kb on - strand, within HMPREF1078_RS15055 at 69.901 kb on - strand, within HMPREF1078_RS15055 at 69.939 kb on + strand, within HMPREF1078_RS15055 at 69.939 kb on + strand, within HMPREF1078_RS15055 at 69.940 kb on - strand, within HMPREF1078_RS15055 at 70.136 kb on + strand, within HMPREF1078_RS15055 at 70.154 kb on + strand, within HMPREF1078_RS15055 at 70.160 kb on + strand, within HMPREF1078_RS15055 at 70.164 kb on - strand, within HMPREF1078_RS15055 at 70.226 kb on + strand, within HMPREF1078_RS15055 at 70.374 kb on - strand, within HMPREF1078_RS15055 at 70.377 kb on - strand, within HMPREF1078_RS15055 at 70.383 kb on - strand, within HMPREF1078_RS15055 at 70.484 kb on + strand, within HMPREF1078_RS15055 at 70.496 kb on + strand, within HMPREF1078_RS15055 at 70.702 kb on + strand, within HMPREF1078_RS15055 at 70.702 kb on + strand, within HMPREF1078_RS15055 at 70.703 kb on - strand, within HMPREF1078_RS15055 at 70.707 kb on - strand, within HMPREF1078_RS15055 at 70.707 kb on - strand, within HMPREF1078_RS15055 at 70.712 kb on - strand, within HMPREF1078_RS15055 at 70.778 kb on + strand, within HMPREF1078_RS15055 at 70.862 kb on + strand, within HMPREF1078_RS15055 at 70.907 kb on - strand, within HMPREF1078_RS15055 at 70.907 kb on - strand, within HMPREF1078_RS15055 at 70.907 kb on - strand, within HMPREF1078_RS15055 at 70.907 kb on - strand, within HMPREF1078_RS15055 at 70.939 kb on + strand, within HMPREF1078_RS15055 at 70.939 kb on + strand, within HMPREF1078_RS15055 at 70.959 kb on - strand, within HMPREF1078_RS15055 at 70.993 kb on + strand, within HMPREF1078_RS15055 at 71.074 kb on + strand, within HMPREF1078_RS15055 at 71.074 kb on + strand, within HMPREF1078_RS15055 at 71.074 kb on + strand, within HMPREF1078_RS15055 at 71.075 kb on - strand, within HMPREF1078_RS15055 at 71.118 kb on - strand, within HMPREF1078_RS15055 at 71.118 kb on - strand, within HMPREF1078_RS15055 at 71.118 kb on - strand, within HMPREF1078_RS15055 at 71.144 kb on + strand, within HMPREF1078_RS15055 at 71.171 kb on + strand, within HMPREF1078_RS15055 at 71.172 kb on - strand, within HMPREF1078_RS15055 at 71.176 kb on + strand, within HMPREF1078_RS15055 at 71.177 kb on - strand, within HMPREF1078_RS15055 at 71.188 kb on + strand, within HMPREF1078_RS15055 at 71.347 kb on + strand at 71.347 kb on + strand at 71.351 kb on + strand at 71.357 kb on - strand at 71.367 kb on - strand at 71.371 kb on + strand at 71.402 kb on - strand at 71.402 kb on - strand at 71.427 kb on + strand at 71.427 kb on + strand at 71.428 kb on - strand at 71.526 kb on + strand at 71.552 kb on - strand at 71.552 kb on - strand at 71.592 kb on + strand at 71.639 kb on + strand at 71.639 kb on + strand at 71.662 kb on + strand at 71.662 kb on + strand at 71.663 kb on - strand at 71.663 kb on - strand at 71.663 kb on - strand at 71.663 kb on - strand at 71.666 kb on + strand at 71.666 kb on + strand at 71.666 kb on + strand at 71.666 kb on + strand at 71.667 kb on - strand at 71.667 kb on - strand at 71.667 kb on - strand at 71.667 kb on - strand at 71.668 kb on + strand at 71.668 kb on + strand at 71.669 kb on - strand at 71.669 kb on - strand at 71.670 kb on + strand at 71.670 kb on + strand at 71.670 kb on + strand at 71.676 kb on - strand at 71.729 kb on - strand at 71.732 kb on + strand at 71.732 kb on + strand at 71.732 kb on + strand at 71.732 kb on + strand at 71.732 kb on + strand at 71.733 kb on - strand at 71.733 kb on - strand at 71.733 kb on - strand at 71.734 kb on + strand at 71.735 kb on - strand at 71.735 kb on - strand at 71.735 kb on - strand at 71.736 kb on + strand at 71.736 kb on + strand at 71.737 kb on - strand at 71.737 kb on - strand at 71.737 kb on - strand at 71.742 kb on - strand at 71.742 kb on - strand at 71.759 kb on - strand at 71.761 kb on - strand at 71.794 kb on + strand at 71.795 kb on - strand at 71.798 kb on + strand at 71.798 kb on + strand at 71.799 kb on - strand at 71.799 kb on - strand at 71.799 kb on - strand at 71.800 kb on + strand at 71.801 kb on - strand at 71.802 kb on + strand at 71.802 kb on + strand at 71.802 kb on + strand at 71.802 kb on + strand at 71.802 kb on + strand at 71.803 kb on - strand at 71.803 kb on - strand at 71.803 kb on - strand at 71.807 kb on + strand at 71.808 kb on - strand at 71.833 kb on - strand at 71.859 kb on - strand at 71.863 kb on - strand at 71.863 kb on - strand at 71.863 kb on - strand at 71.865 kb on - strand at 71.865 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand at 71.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 68,324 - HMPREF1078_RS15050 0.59 +1.0 68,324 - HMPREF1078_RS15050 0.59 +0.6 68,325 + HMPREF1078_RS15050 0.59 +1.7 68,325 + HMPREF1078_RS15050 0.59 -1.2 68,325 + HMPREF1078_RS15050 0.59 -1.1 68,325 + HMPREF1078_RS15050 0.59 +1.5 68,326 - HMPREF1078_RS15050 0.59 -0.2 68,326 - HMPREF1078_RS15050 0.59 +0.3 68,326 - HMPREF1078_RS15050 0.59 -0.1 68,326 - HMPREF1078_RS15050 0.59 -1.1 68,326 - HMPREF1078_RS15050 0.59 -0.5 68,382 - HMPREF1078_RS15050 0.62 +0.2 68,383 + HMPREF1078_RS15050 0.62 -0.5 68,383 + HMPREF1078_RS15050 0.62 -0.8 68,521 + HMPREF1078_RS15050 0.69 +1.2 68,521 + HMPREF1078_RS15050 0.69 -0.4 68,522 - HMPREF1078_RS15050 0.69 -1.2 68,525 + HMPREF1078_RS15050 0.69 +1.6 68,525 + HMPREF1078_RS15050 0.69 -2.3 68,525 + HMPREF1078_RS15050 0.69 +1.2 68,531 - HMPREF1078_RS15050 0.69 -0.6 68,688 - HMPREF1078_RS15050 0.77 -0.8 68,785 + HMPREF1078_RS15050 0.81 -3.0 68,806 + HMPREF1078_RS15050 0.82 +0.0 68,811 + HMPREF1078_RS15050 0.83 +0.8 68,815 + HMPREF1078_RS15050 0.83 +0.4 68,816 - HMPREF1078_RS15050 0.83 -1.4 68,846 + HMPREF1078_RS15050 0.84 -1.4 68,923 + HMPREF1078_RS15050 0.88 +0.2 68,924 - HMPREF1078_RS15050 0.88 -0.1 68,924 - HMPREF1078_RS15050 0.88 -0.4 69,038 + -0.6 69,038 + -1.6 69,062 - +1.1 69,112 + +1.0 69,149 + -2.0 69,184 + -1.9 69,194 + -1.4 69,195 - -1.0 69,226 - -1.5 69,240 + +0.1 69,245 + -0.5 69,397 + +0.2 69,464 + -2.0 69,465 - -0.1 69,474 + +0.6 69,476 + -1.8 69,477 - +0.2 69,486 - +0.3 69,498 + +1.5 69,498 + +0.0 69,499 - -1.9 69,618 + HMPREF1078_RS15055 0.14 -1.5 69,624 - HMPREF1078_RS15055 0.15 +0.5 69,624 - HMPREF1078_RS15055 0.15 -0.7 69,624 - HMPREF1078_RS15055 0.15 +0.7 69,708 + HMPREF1078_RS15055 0.18 -0.8 69,798 - HMPREF1078_RS15055 0.22 +0.8 69,798 - HMPREF1078_RS15055 0.22 -0.1 69,798 - HMPREF1078_RS15055 0.22 +1.1 69,798 - HMPREF1078_RS15055 0.22 +0.3 69,799 + HMPREF1078_RS15055 0.22 +1.5 69,799 + HMPREF1078_RS15055 0.22 +0.6 69,799 + HMPREF1078_RS15055 0.22 +0.5 69,846 + HMPREF1078_RS15055 0.25 +0.1 69,901 - HMPREF1078_RS15055 0.27 -1.0 69,901 - HMPREF1078_RS15055 0.27 -0.4 69,939 + HMPREF1078_RS15055 0.29 +1.2 69,939 + HMPREF1078_RS15055 0.29 +1.2 69,940 - HMPREF1078_RS15055 0.29 +0.5 70,136 + HMPREF1078_RS15055 0.38 -0.5 70,154 + HMPREF1078_RS15055 0.38 -0.1 70,160 + HMPREF1078_RS15055 0.39 +0.2 70,164 - HMPREF1078_RS15055 0.39 +2.2 70,226 + HMPREF1078_RS15055 0.42 -1.5 70,374 - HMPREF1078_RS15055 0.48 -1.9 70,377 - HMPREF1078_RS15055 0.48 -0.7 70,383 - HMPREF1078_RS15055 0.49 +1.9 70,484 + HMPREF1078_RS15055 0.53 +1.5 70,496 + HMPREF1078_RS15055 0.54 -0.1 70,702 + HMPREF1078_RS15055 0.63 -2.3 70,702 + HMPREF1078_RS15055 0.63 +3.8 70,703 - HMPREF1078_RS15055 0.63 -1.8 70,707 - HMPREF1078_RS15055 0.63 -1.6 70,707 - HMPREF1078_RS15055 0.63 -1.0 70,712 - HMPREF1078_RS15055 0.63 +0.3 70,778 + HMPREF1078_RS15055 0.66 +0.4 70,862 + HMPREF1078_RS15055 0.70 -1.2 70,907 - HMPREF1078_RS15055 0.72 -0.0 70,907 - HMPREF1078_RS15055 0.72 +0.6 70,907 - HMPREF1078_RS15055 0.72 +0.6 70,907 - HMPREF1078_RS15055 0.72 +1.5 70,939 + HMPREF1078_RS15055 0.74 +2.0 70,939 + HMPREF1078_RS15055 0.74 -0.5 70,959 - HMPREF1078_RS15055 0.75 +0.1 70,993 + HMPREF1078_RS15055 0.76 -1.1 71,074 + HMPREF1078_RS15055 0.80 -1.1 71,074 + HMPREF1078_RS15055 0.80 +0.8 71,074 + HMPREF1078_RS15055 0.80 +0.9 71,075 - HMPREF1078_RS15055 0.80 +0.1 71,118 - HMPREF1078_RS15055 0.82 -1.0 71,118 - HMPREF1078_RS15055 0.82 +1.6 71,118 - HMPREF1078_RS15055 0.82 +0.9 71,144 + HMPREF1078_RS15055 0.83 +0.5 71,171 + HMPREF1078_RS15055 0.84 -2.2 71,172 - HMPREF1078_RS15055 0.84 +2.4 71,176 + HMPREF1078_RS15055 0.84 -0.4 71,177 - HMPREF1078_RS15055 0.84 -0.6 71,188 + HMPREF1078_RS15055 0.85 -1.1 71,347 + +2.6 71,347 + -0.8 71,351 + +0.2 71,357 - +2.2 71,367 - +0.8 71,371 + -0.5 71,402 - +0.0 71,402 - -1.6 71,427 + -1.0 71,427 + -0.9 71,428 - +0.5 71,526 + +2.1 71,552 - +2.2 71,552 - +1.7 71,592 + -0.1 71,639 + -2.8 71,639 + +0.6 71,662 + -0.9 71,662 + -0.8 71,663 - +0.5 71,663 - +2.2 71,663 - +1.5 71,663 - +2.2 71,666 + -0.4 71,666 + -2.0 71,666 + -1.0 71,666 + -1.2 71,667 - -1.9 71,667 - -1.5 71,667 - -2.1 71,667 - -0.8 71,668 + +0.2 71,668 + -0.6 71,669 - -0.1 71,669 - +0.6 71,670 + -0.6 71,670 + +0.4 71,670 + -1.4 71,676 - +1.2 71,729 - -0.4 71,732 + -1.6 71,732 + -1.0 71,732 + -1.3 71,732 + +0.8 71,732 + -1.1 71,733 - -2.2 71,733 - +1.2 71,733 - -1.8 71,734 + +0.0 71,735 - -0.6 71,735 - +2.3 71,735 - -1.4 71,736 + -2.0 71,736 + -0.3 71,737 - +0.6 71,737 - -1.5 71,737 - +1.5 71,742 - +0.2 71,742 - -1.0 71,759 - -1.5 71,761 - -0.1 71,794 + -0.5 71,795 - +0.9 71,798 + +0.0 71,798 + +0.2 71,799 - +1.6 71,799 - -0.3 71,799 - -0.2 71,800 + -0.7 71,801 - -0.6 71,802 + -0.1 71,802 + +0.7 71,802 + -1.8 71,802 + +0.2 71,802 + -0.1 71,803 - +0.5 71,803 - +1.8 71,803 - +0.9 71,807 + +0.6 71,808 - +0.3 71,833 - -0.1 71,859 - -0.7 71,863 - -2.5 71,863 - -0.8 71,863 - -1.3 71,865 - +0.5 71,865 - -1.2 71,867 - -1.5 71,867 - -1.4 71,867 - -0.4 71,867 - +0.5 71,867 - -0.6 71,867 - -1.2 71,867 - +1.4 71,867 - +0.4 71,867 - +1.3
Or see this region's nucleotide sequence