Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09985 and HMPREF1078_RS09990 are separated by 96 nucleotides HMPREF1078_RS09990 and HMPREF1078_RS09995 are separated by 239 nucleotides
HMPREF1078_RS09985: HMPREF1078_RS09985 - substrate-binding domain-containing protein, at 615,510 to 618,242
_RS09985
HMPREF1078_RS09990: HMPREF1078_RS09990 - WbuC family cupin fold metalloprotein, at 618,339 to 618,806
_RS09990
HMPREF1078_RS09995: HMPREF1078_RS09995 - U32 family peptidase, at 619,046 to 620,875
_RS09995
Position (kb) 618
619 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 617.398 kb on - strand, within HMPREF1078_RS09985 at 617.766 kb on + strand, within HMPREF1078_RS09985 at 617.776 kb on - strand, within HMPREF1078_RS09985 at 617.780 kb on + strand, within HMPREF1078_RS09985 at 617.781 kb on - strand, within HMPREF1078_RS09985 at 617.856 kb on - strand, within HMPREF1078_RS09985 at 617.856 kb on - strand, within HMPREF1078_RS09985 at 617.857 kb on + strand, within HMPREF1078_RS09985 at 617.857 kb on + strand, within HMPREF1078_RS09985 at 617.857 kb on + strand, within HMPREF1078_RS09985 at 617.857 kb on + strand, within HMPREF1078_RS09985 at 617.858 kb on - strand, within HMPREF1078_RS09985 at 617.858 kb on - strand, within HMPREF1078_RS09985 at 617.864 kb on + strand, within HMPREF1078_RS09985 at 617.976 kb on + strand at 617.977 kb on - strand at 617.988 kb on - strand at 618.092 kb on + strand at 618.131 kb on + strand at 618.131 kb on + strand at 618.131 kb on + strand at 618.205 kb on - strand at 618.205 kb on - strand at 618.220 kb on + strand at 618.220 kb on + strand at 618.223 kb on + strand at 618.224 kb on - strand at 618.224 kb on - strand at 618.229 kb on - strand at 618.324 kb on + strand at 618.324 kb on + strand at 618.480 kb on + strand, within HMPREF1078_RS09990 at 618.481 kb on - strand, within HMPREF1078_RS09990 at 618.553 kb on + strand, within HMPREF1078_RS09990 at 618.596 kb on - strand, within HMPREF1078_RS09990 at 618.682 kb on + strand, within HMPREF1078_RS09990 at 618.683 kb on - strand, within HMPREF1078_RS09990 at 618.684 kb on + strand, within HMPREF1078_RS09990 at 618.684 kb on + strand, within HMPREF1078_RS09990 at 618.685 kb on - strand, within HMPREF1078_RS09990 at 618.777 kb on + strand at 618.778 kb on - strand at 618.779 kb on + strand at 618.780 kb on - strand at 618.780 kb on - strand at 618.788 kb on - strand at 618.790 kb on + strand at 618.803 kb on - strand at 618.803 kb on - strand at 618.816 kb on - strand at 618.940 kb on + strand at 618.940 kb on + strand at 618.940 kb on + strand at 618.945 kb on - strand at 619.015 kb on - strand at 619.114 kb on - strand at 619.126 kb on - strand at 619.158 kb on + strand at 619.319 kb on - strand, within HMPREF1078_RS09995 at 619.341 kb on - strand, within HMPREF1078_RS09995 at 619.507 kb on + strand, within HMPREF1078_RS09995 at 619.508 kb on - strand, within HMPREF1078_RS09995 at 619.535 kb on + strand, within HMPREF1078_RS09995 at 619.537 kb on + strand, within HMPREF1078_RS09995 at 619.538 kb on - strand, within HMPREF1078_RS09995 at 619.540 kb on + strand, within HMPREF1078_RS09995 at 619.541 kb on - strand, within HMPREF1078_RS09995 at 619.618 kb on + strand, within HMPREF1078_RS09995 at 619.619 kb on - strand, within HMPREF1078_RS09995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 617,398 - HMPREF1078_RS09985 0.69 -1.6 617,766 + HMPREF1078_RS09985 0.83 +2.1 617,776 - HMPREF1078_RS09985 0.83 +1.1 617,780 + HMPREF1078_RS09985 0.83 -0.4 617,781 - HMPREF1078_RS09985 0.83 -0.4 617,856 - HMPREF1078_RS09985 0.86 +0.4 617,856 - HMPREF1078_RS09985 0.86 -1.5 617,857 + HMPREF1078_RS09985 0.86 -1.0 617,857 + HMPREF1078_RS09985 0.86 +1.6 617,857 + HMPREF1078_RS09985 0.86 -0.7 617,857 + HMPREF1078_RS09985 0.86 -0.4 617,858 - HMPREF1078_RS09985 0.86 -0.0 617,858 - HMPREF1078_RS09985 0.86 +0.6 617,864 + HMPREF1078_RS09985 0.86 +2.1 617,976 + -0.2 617,977 - -2.1 617,988 - +2.1 618,092 + -1.2 618,131 + -0.9 618,131 + +0.6 618,131 + -1.8 618,205 - -1.0 618,205 - -0.4 618,220 + -1.2 618,220 + -1.7 618,223 + -0.7 618,224 - -1.4 618,224 - -1.3 618,229 - +0.4 618,324 + -0.7 618,324 + -0.4 618,480 + HMPREF1078_RS09990 0.30 +0.6 618,481 - HMPREF1078_RS09990 0.30 -0.0 618,553 + HMPREF1078_RS09990 0.46 -1.9 618,596 - HMPREF1078_RS09990 0.55 -0.6 618,682 + HMPREF1078_RS09990 0.73 -0.2 618,683 - HMPREF1078_RS09990 0.74 -1.0 618,684 + HMPREF1078_RS09990 0.74 -1.6 618,684 + HMPREF1078_RS09990 0.74 -2.2 618,685 - HMPREF1078_RS09990 0.74 -2.1 618,777 + +0.6 618,778 - -0.7 618,779 + -0.7 618,780 - -0.9 618,780 - +0.1 618,788 - +0.1 618,790 + -1.0 618,803 - -1.2 618,803 - -1.8 618,816 - -2.5 618,940 + -1.2 618,940 + -0.6 618,940 + +0.1 618,945 - +1.1 619,015 - +3.1 619,114 - -1.6 619,126 - +0.6 619,158 + -0.9 619,319 - HMPREF1078_RS09995 0.15 +1.8 619,341 - HMPREF1078_RS09995 0.16 -1.9 619,507 + HMPREF1078_RS09995 0.25 -1.2 619,508 - HMPREF1078_RS09995 0.25 +1.0 619,535 + HMPREF1078_RS09995 0.27 -1.5 619,537 + HMPREF1078_RS09995 0.27 -1.3 619,538 - HMPREF1078_RS09995 0.27 -0.6 619,540 + HMPREF1078_RS09995 0.27 +3.1 619,541 - HMPREF1078_RS09995 0.27 -1.3 619,618 + HMPREF1078_RS09995 0.31 +0.1 619,619 - HMPREF1078_RS09995 0.31 -0.4
Or see this region's nucleotide sequence