Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09010 and HMPREF1078_RS09015 are separated by 16 nucleotides HMPREF1078_RS09015 and HMPREF1078_RS09020 are separated by 201 nucleotides HMPREF1078_RS09020 and HMPREF1078_RS09025 are separated by 10 nucleotides HMPREF1078_RS09025 and HMPREF1078_RS09030 overlap by 4 nucleotides
HMPREF1078_RS09010: HMPREF1078_RS09010 - DUF3408 domain-containing protein, at 404,462 to 404,815
_RS09010
HMPREF1078_RS09015: HMPREF1078_RS09015 - hypothetical protein, at 404,832 to 405,560
_RS09015
HMPREF1078_RS09020: HMPREF1078_RS09020 - DUF4134 domain-containing protein, at 405,762 to 406,079
_RS09020
HMPREF1078_RS09025: HMPREF1078_RS09025 - DUF4133 domain-containing protein, at 406,090 to 406,422
_RS09025
HMPREF1078_RS09030: HMPREF1078_RS09030 - TraG family conjugative transposon ATPase, at 406,419 to 408,923
_RS09030
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.455 kb on - strand, within HMPREF1078_RS09015 at 405.553 kb on - strand at 405.557 kb on - strand at 405.557 kb on - strand at 405.762 kb on - strand at 405.920 kb on - strand, within HMPREF1078_RS09020 at 405.922 kb on - strand, within HMPREF1078_RS09020 at 406.077 kb on + strand at 406.080 kb on + strand at 406.081 kb on - strand at 406.081 kb on - strand at 406.089 kb on + strand at 406.090 kb on - strand at 406.156 kb on + strand, within HMPREF1078_RS09025 at 406.157 kb on - strand, within HMPREF1078_RS09025 at 406.214 kb on - strand, within HMPREF1078_RS09025 at 406.214 kb on - strand, within HMPREF1078_RS09025 at 406.239 kb on - strand, within HMPREF1078_RS09025 at 406.239 kb on - strand, within HMPREF1078_RS09025 at 406.239 kb on - strand, within HMPREF1078_RS09025 at 406.278 kb on - strand, within HMPREF1078_RS09025 at 406.428 kb on - strand at 406.428 kb on - strand at 406.428 kb on - strand at 406.545 kb on + strand at 406.545 kb on + strand at 406.618 kb on - strand at 406.752 kb on + strand, within HMPREF1078_RS09030 at 406.826 kb on + strand, within HMPREF1078_RS09030 at 406.826 kb on + strand, within HMPREF1078_RS09030 at 406.827 kb on - strand, within HMPREF1078_RS09030
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 405,455 - HMPREF1078_RS09015 0.85 +2.1 405,553 - -1.3 405,557 - +2.7 405,557 - -1.8 405,762 - +0.0 405,920 - HMPREF1078_RS09020 0.50 -1.8 405,922 - HMPREF1078_RS09020 0.50 -2.1 406,077 + -1.3 406,080 + +1.1 406,081 - +0.2 406,081 - -0.9 406,089 + -0.5 406,090 - -1.1 406,156 + HMPREF1078_RS09025 0.20 -0.1 406,157 - HMPREF1078_RS09025 0.20 +0.2 406,214 - HMPREF1078_RS09025 0.37 -0.5 406,214 - HMPREF1078_RS09025 0.37 +0.1 406,239 - HMPREF1078_RS09025 0.45 -0.9 406,239 - HMPREF1078_RS09025 0.45 +0.1 406,239 - HMPREF1078_RS09025 0.45 -0.1 406,278 - HMPREF1078_RS09025 0.56 -0.7 406,428 - -1.2 406,428 - -1.7 406,428 - +0.5 406,545 + -0.3 406,545 + -0.2 406,618 - -1.5 406,752 + HMPREF1078_RS09030 0.13 +1.9 406,826 + HMPREF1078_RS09030 0.16 -1.3 406,826 + HMPREF1078_RS09030 0.16 +0.1 406,827 - HMPREF1078_RS09030 0.16 +1.1
Or see this region's nucleotide sequence