Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08685 and HMPREF1078_RS08690 are separated by 164 nucleotides HMPREF1078_RS08690 and HMPREF1078_RS08695 are separated by 254 nucleotides
HMPREF1078_RS08685: HMPREF1078_RS08685 - ribokinase, at 320,077 to 321,006
_RS08685
HMPREF1078_RS08690: HMPREF1078_RS08690 - hypothetical protein, at 321,171 to 322,718
_RS08690
HMPREF1078_RS08695: HMPREF1078_RS08695 - alpha/beta hydrolase, at 322,973 to 323,941
_RS08695
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 320.223 kb on + strand, within HMPREF1078_RS08685 at 320.228 kb on - strand, within HMPREF1078_RS08685 at 320.304 kb on + strand, within HMPREF1078_RS08685 at 320.304 kb on + strand, within HMPREF1078_RS08685 at 320.328 kb on + strand, within HMPREF1078_RS08685 at 320.329 kb on - strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.331 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.334 kb on + strand, within HMPREF1078_RS08685 at 320.335 kb on - strand, within HMPREF1078_RS08685 at 320.335 kb on - strand, within HMPREF1078_RS08685 at 320.389 kb on - strand, within HMPREF1078_RS08685 at 320.450 kb on + strand, within HMPREF1078_RS08685 at 320.453 kb on - strand, within HMPREF1078_RS08685 at 320.621 kb on - strand, within HMPREF1078_RS08685 at 320.738 kb on + strand, within HMPREF1078_RS08685 at 320.745 kb on + strand, within HMPREF1078_RS08685 at 320.745 kb on + strand, within HMPREF1078_RS08685 at 320.815 kb on - strand, within HMPREF1078_RS08685 at 320.939 kb on - strand at 320.953 kb on - strand at 321.007 kb on - strand at 321.007 kb on - strand at 321.018 kb on + strand at 321.018 kb on + strand at 321.022 kb on - strand at 321.056 kb on + strand at 321.057 kb on - strand at 321.058 kb on + strand at 321.058 kb on + strand at 321.061 kb on + strand at 321.062 kb on - strand at 321.065 kb on + strand at 321.065 kb on + strand at 321.066 kb on - strand at 321.066 kb on - strand at 321.066 kb on - strand at 321.129 kb on + strand at 321.129 kb on + strand at 321.130 kb on - strand at 321.135 kb on - strand at 321.136 kb on + strand at 321.151 kb on - strand at 321.205 kb on + strand at 321.252 kb on + strand at 321.254 kb on + strand at 321.255 kb on - strand at 321.255 kb on - strand at 321.255 kb on - strand at 321.283 kb on - strand at 321.284 kb on + strand at 321.284 kb on + strand at 321.284 kb on + strand at 321.292 kb on + strand at 321.295 kb on - strand at 321.332 kb on - strand, within HMPREF1078_RS08690 at 321.333 kb on + strand, within HMPREF1078_RS08690 at 321.442 kb on + strand, within HMPREF1078_RS08690 at 321.442 kb on + strand, within HMPREF1078_RS08690 at 321.452 kb on + strand, within HMPREF1078_RS08690 at 321.452 kb on + strand, within HMPREF1078_RS08690 at 321.553 kb on - strand, within HMPREF1078_RS08690 at 321.605 kb on - strand, within HMPREF1078_RS08690 at 321.673 kb on + strand, within HMPREF1078_RS08690 at 321.682 kb on - strand, within HMPREF1078_RS08690 at 321.712 kb on + strand, within HMPREF1078_RS08690 at 321.712 kb on + strand, within HMPREF1078_RS08690 at 321.712 kb on + strand, within HMPREF1078_RS08690 at 321.713 kb on - strand, within HMPREF1078_RS08690 at 321.713 kb on - strand, within HMPREF1078_RS08690 at 321.714 kb on + strand, within HMPREF1078_RS08690 at 321.715 kb on - strand, within HMPREF1078_RS08690 at 321.720 kb on - strand, within HMPREF1078_RS08690 at 321.738 kb on - strand, within HMPREF1078_RS08690 at 321.738 kb on - strand, within HMPREF1078_RS08690 at 321.742 kb on - strand, within HMPREF1078_RS08690 at 321.742 kb on - strand, within HMPREF1078_RS08690 at 321.750 kb on + strand, within HMPREF1078_RS08690 at 321.879 kb on + strand, within HMPREF1078_RS08690 at 321.918 kb on + strand, within HMPREF1078_RS08690 at 321.958 kb on + strand, within HMPREF1078_RS08690 at 321.959 kb on - strand, within HMPREF1078_RS08690 at 321.995 kb on - strand, within HMPREF1078_RS08690 at 322.003 kb on + strand, within HMPREF1078_RS08690 at 322.004 kb on - strand, within HMPREF1078_RS08690 at 322.030 kb on + strand, within HMPREF1078_RS08690 at 322.031 kb on - strand, within HMPREF1078_RS08690 at 322.111 kb on + strand, within HMPREF1078_RS08690 at 322.111 kb on + strand, within HMPREF1078_RS08690 at 322.126 kb on - strand, within HMPREF1078_RS08690 at 322.131 kb on + strand, within HMPREF1078_RS08690 at 322.132 kb on - strand, within HMPREF1078_RS08690 at 322.184 kb on + strand, within HMPREF1078_RS08690 at 322.185 kb on - strand, within HMPREF1078_RS08690 at 322.185 kb on - strand, within HMPREF1078_RS08690 at 322.194 kb on + strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.195 kb on - strand, within HMPREF1078_RS08690 at 322.212 kb on - strand, within HMPREF1078_RS08690 at 322.247 kb on - strand, within HMPREF1078_RS08690 at 322.261 kb on - strand, within HMPREF1078_RS08690 at 322.435 kb on + strand, within HMPREF1078_RS08690 at 322.435 kb on + strand, within HMPREF1078_RS08690 at 322.476 kb on + strand, within HMPREF1078_RS08690 at 322.478 kb on + strand, within HMPREF1078_RS08690 at 322.479 kb on - strand, within HMPREF1078_RS08690 at 322.495 kb on + strand, within HMPREF1078_RS08690 at 322.574 kb on + strand at 322.574 kb on + strand at 322.575 kb on - strand at 322.576 kb on + strand at 322.576 kb on + strand at 322.577 kb on - strand at 322.632 kb on - strand at 322.699 kb on - strand at 322.699 kb on - strand at 322.699 kb on - strand at 322.700 kb on + strand at 322.701 kb on - strand at 322.729 kb on - strand at 322.820 kb on + strand at 322.820 kb on + strand at 322.821 kb on - strand at 322.821 kb on - strand at 322.821 kb on - strand at 322.875 kb on + strand at 322.930 kb on - strand at 322.943 kb on - strand at 322.943 kb on - strand at 322.945 kb on - strand at 322.945 kb on - strand at 322.969 kb on - strand at 322.969 kb on - strand at 323.024 kb on + strand at 323.025 kb on - strand at 323.042 kb on - strand at 323.087 kb on - strand, within HMPREF1078_RS08695 at 323.087 kb on - strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.090 kb on + strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.091 kb on - strand, within HMPREF1078_RS08695 at 323.092 kb on + strand, within HMPREF1078_RS08695 at 323.093 kb on - strand, within HMPREF1078_RS08695 at 323.131 kb on + strand, within HMPREF1078_RS08695 at 323.232 kb on - strand, within HMPREF1078_RS08695 at 323.261 kb on + strand, within HMPREF1078_RS08695 at 323.266 kb on - strand, within HMPREF1078_RS08695 at 323.266 kb on - strand, within HMPREF1078_RS08695 at 323.320 kb on + strand, within HMPREF1078_RS08695 at 323.380 kb on + strand, within HMPREF1078_RS08695 at 323.381 kb on - strand, within HMPREF1078_RS08695 at 323.381 kb on - strand, within HMPREF1078_RS08695 at 323.533 kb on + strand, within HMPREF1078_RS08695 at 323.534 kb on - strand, within HMPREF1078_RS08695 at 323.534 kb on - strand, within HMPREF1078_RS08695 at 323.534 kb on - strand, within HMPREF1078_RS08695 at 323.539 kb on - strand, within HMPREF1078_RS08695 at 323.539 kb on - strand, within HMPREF1078_RS08695 at 323.630 kb on + strand, within HMPREF1078_RS08695 at 323.631 kb on - strand, within HMPREF1078_RS08695 at 323.633 kb on + strand, within HMPREF1078_RS08695 at 323.633 kb on + strand, within HMPREF1078_RS08695 at 323.636 kb on - strand, within HMPREF1078_RS08695
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 320,223 + HMPREF1078_RS08685 0.16 -0.7 320,228 - HMPREF1078_RS08685 0.16 -2.0 320,304 + HMPREF1078_RS08685 0.24 -0.1 320,304 + HMPREF1078_RS08685 0.24 +0.1 320,328 + HMPREF1078_RS08685 0.27 +0.9 320,329 - HMPREF1078_RS08685 0.27 -0.8 320,331 + HMPREF1078_RS08685 0.27 +1.0 320,331 + HMPREF1078_RS08685 0.27 -0.9 320,331 + HMPREF1078_RS08685 0.27 -2.6 320,334 + HMPREF1078_RS08685 0.28 -0.5 320,334 + HMPREF1078_RS08685 0.28 +0.5 320,334 + HMPREF1078_RS08685 0.28 -1.3 320,334 + HMPREF1078_RS08685 0.28 -0.7 320,334 + HMPREF1078_RS08685 0.28 +0.2 320,335 - HMPREF1078_RS08685 0.28 -0.5 320,335 - HMPREF1078_RS08685 0.28 -1.3 320,389 - HMPREF1078_RS08685 0.34 +0.5 320,450 + HMPREF1078_RS08685 0.40 -1.3 320,453 - HMPREF1078_RS08685 0.40 +0.8 320,621 - HMPREF1078_RS08685 0.58 -0.7 320,738 + HMPREF1078_RS08685 0.71 -0.5 320,745 + HMPREF1078_RS08685 0.72 +0.8 320,745 + HMPREF1078_RS08685 0.72 -1.3 320,815 - HMPREF1078_RS08685 0.79 +0.5 320,939 - -1.2 320,953 - -0.7 321,007 - +0.1 321,007 - -0.7 321,018 + -0.7 321,018 + -0.5 321,022 - +0.1 321,056 + -0.7 321,057 - -1.2 321,058 + -2.6 321,058 + -0.2 321,061 + -0.1 321,062 - -1.3 321,065 + -1.5 321,065 + +1.1 321,066 - -0.3 321,066 - -0.5 321,066 - -1.7 321,129 + +0.1 321,129 + +0.5 321,130 - +1.1 321,135 - -1.3 321,136 + -1.8 321,151 - +0.8 321,205 + -1.1 321,252 + -1.6 321,254 + -1.3 321,255 - -2.0 321,255 - +0.5 321,255 - +0.1 321,283 - +1.1 321,284 + -1.5 321,284 + +0.9 321,284 + +0.7 321,292 + -1.2 321,295 - +0.7 321,332 - HMPREF1078_RS08690 0.10 +0.1 321,333 + HMPREF1078_RS08690 0.10 +0.1 321,442 + HMPREF1078_RS08690 0.18 -1.3 321,442 + HMPREF1078_RS08690 0.18 +0.5 321,452 + HMPREF1078_RS08690 0.18 +2.1 321,452 + HMPREF1078_RS08690 0.18 -0.5 321,553 - HMPREF1078_RS08690 0.25 -0.9 321,605 - HMPREF1078_RS08690 0.28 +2.1 321,673 + HMPREF1078_RS08690 0.32 +0.8 321,682 - HMPREF1078_RS08690 0.33 -2.6 321,712 + HMPREF1078_RS08690 0.35 +0.1 321,712 + HMPREF1078_RS08690 0.35 -2.5 321,712 + HMPREF1078_RS08690 0.35 -0.2 321,713 - HMPREF1078_RS08690 0.35 -0.5 321,713 - HMPREF1078_RS08690 0.35 -1.6 321,714 + HMPREF1078_RS08690 0.35 -1.2 321,715 - HMPREF1078_RS08690 0.35 -2.1 321,720 - HMPREF1078_RS08690 0.35 -0.2 321,738 - HMPREF1078_RS08690 0.37 -0.2 321,738 - HMPREF1078_RS08690 0.37 +0.0 321,742 - HMPREF1078_RS08690 0.37 -0.8 321,742 - HMPREF1078_RS08690 0.37 -0.1 321,750 + HMPREF1078_RS08690 0.37 +0.8 321,879 + HMPREF1078_RS08690 0.46 -0.1 321,918 + HMPREF1078_RS08690 0.48 +0.4 321,958 + HMPREF1078_RS08690 0.51 +1.1 321,959 - HMPREF1078_RS08690 0.51 -0.5 321,995 - HMPREF1078_RS08690 0.53 +1.7 322,003 + HMPREF1078_RS08690 0.54 -0.7 322,004 - HMPREF1078_RS08690 0.54 -0.5 322,030 + HMPREF1078_RS08690 0.55 -1.2 322,031 - HMPREF1078_RS08690 0.56 -0.6 322,111 + HMPREF1078_RS08690 0.61 +1.6 322,111 + HMPREF1078_RS08690 0.61 +0.6 322,126 - HMPREF1078_RS08690 0.62 +0.5 322,131 + HMPREF1078_RS08690 0.62 +1.4 322,132 - HMPREF1078_RS08690 0.62 +2.5 322,184 + HMPREF1078_RS08690 0.65 -1.5 322,185 - HMPREF1078_RS08690 0.66 +1.3 322,185 - HMPREF1078_RS08690 0.66 -1.7 322,194 + HMPREF1078_RS08690 0.66 +2.3 322,195 - HMPREF1078_RS08690 0.66 -0.7 322,195 - HMPREF1078_RS08690 0.66 -0.6 322,195 - HMPREF1078_RS08690 0.66 +0.5 322,195 - HMPREF1078_RS08690 0.66 +0.1 322,212 - HMPREF1078_RS08690 0.67 +1.4 322,247 - HMPREF1078_RS08690 0.70 +4.5 322,261 - HMPREF1078_RS08690 0.70 +0.5 322,435 + HMPREF1078_RS08690 0.82 +0.1 322,435 + HMPREF1078_RS08690 0.82 +0.3 322,476 + HMPREF1078_RS08690 0.84 +0.5 322,478 + HMPREF1078_RS08690 0.84 +0.4 322,479 - HMPREF1078_RS08690 0.84 -2.1 322,495 + HMPREF1078_RS08690 0.86 +2.1 322,574 + -0.5 322,574 + +0.1 322,575 - +0.7 322,576 + +5.0 322,576 + +0.5 322,577 - +0.5 322,632 - -1.8 322,699 - -1.3 322,699 - +0.1 322,699 - +0.5 322,700 + -0.7 322,701 - -1.5 322,729 - +1.4 322,820 + -0.7 322,820 + -0.5 322,821 - -1.0 322,821 - +1.9 322,821 - +0.3 322,875 + +0.1 322,930 - -0.7 322,943 - -0.6 322,943 - -0.5 322,945 - -0.8 322,945 - -1.3 322,969 - -0.7 322,969 - -1.6 323,024 + -0.7 323,025 - -1.3 323,042 - -2.6 323,087 - HMPREF1078_RS08695 0.12 +0.5 323,087 - HMPREF1078_RS08695 0.12 -1.2 323,090 + HMPREF1078_RS08695 0.12 -0.2 323,090 + HMPREF1078_RS08695 0.12 +4.3 323,090 + HMPREF1078_RS08695 0.12 -1.6 323,090 + HMPREF1078_RS08695 0.12 +0.4 323,090 + HMPREF1078_RS08695 0.12 -0.2 323,090 + HMPREF1078_RS08695 0.12 -0.2 323,090 + HMPREF1078_RS08695 0.12 -0.5 323,090 + HMPREF1078_RS08695 0.12 +2.1 323,090 + HMPREF1078_RS08695 0.12 +1.1 323,091 - HMPREF1078_RS08695 0.12 -0.8 323,091 - HMPREF1078_RS08695 0.12 -0.7 323,091 - HMPREF1078_RS08695 0.12 +2.4 323,091 - HMPREF1078_RS08695 0.12 -1.7 323,091 - HMPREF1078_RS08695 0.12 -2.0 323,091 - HMPREF1078_RS08695 0.12 -2.4 323,091 - HMPREF1078_RS08695 0.12 +1.0 323,092 + HMPREF1078_RS08695 0.12 -1.6 323,093 - HMPREF1078_RS08695 0.12 -1.5 323,131 + HMPREF1078_RS08695 0.16 +1.3 323,232 - HMPREF1078_RS08695 0.27 +0.5 323,261 + HMPREF1078_RS08695 0.30 +0.3 323,266 - HMPREF1078_RS08695 0.30 -0.9 323,266 - HMPREF1078_RS08695 0.30 +0.1 323,320 + HMPREF1078_RS08695 0.36 +0.3 323,380 + HMPREF1078_RS08695 0.42 -1.3 323,381 - HMPREF1078_RS08695 0.42 +0.5 323,381 - HMPREF1078_RS08695 0.42 +1.1 323,533 + HMPREF1078_RS08695 0.58 +1.1 323,534 - HMPREF1078_RS08695 0.58 +0.5 323,534 - HMPREF1078_RS08695 0.58 +3.7 323,534 - HMPREF1078_RS08695 0.58 +1.8 323,539 - HMPREF1078_RS08695 0.58 -2.0 323,539 - HMPREF1078_RS08695 0.58 +0.1 323,630 + HMPREF1078_RS08695 0.68 +2.1 323,631 - HMPREF1078_RS08695 0.68 +1.1 323,633 + HMPREF1078_RS08695 0.68 +1.2 323,633 + HMPREF1078_RS08695 0.68 +0.1 323,636 - HMPREF1078_RS08695 0.68 -0.2
Or see this region's nucleotide sequence