Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07045 and HMPREF1078_RS07050 are separated by 36 nucleotides HMPREF1078_RS07050 and HMPREF1078_RS07055 are separated by 17 nucleotides HMPREF1078_RS07055 and HMPREF1078_RS07060 are separated by 129 nucleotides HMPREF1078_RS07060 and HMPREF1078_RS07065 are separated by 36 nucleotides
HMPREF1078_RS07045: HMPREF1078_RS07045 - DUF5690 family protein, at 825,875 to 827,221
_RS07045
HMPREF1078_RS07050: HMPREF1078_RS07050 - phosphonoacetaldehyde hydrolase, at 827,258 to 828,046
_RS07050
HMPREF1078_RS07055: HMPREF1078_RS07055 - 2-aminoethylphosphonate--pyruvate transaminase, at 828,064 to 829,161
_RS07055
HMPREF1078_RS07060: HMPREF1078_RS07060 - phosphatase PAP2 family protein, at 829,291 to 830,094
_RS07060
HMPREF1078_RS07065: HMPREF1078_RS07065 - GH3 auxin-responsive promoter family protein, at 830,131 to 831,645
_RS07065
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 827.120 kb on + strand at 827.237 kb on - strand at 827.237 kb on - strand at 827.374 kb on - strand, within HMPREF1078_RS07050 at 827.378 kb on + strand, within HMPREF1078_RS07050 at 827.415 kb on + strand, within HMPREF1078_RS07050 at 827.626 kb on + strand, within HMPREF1078_RS07050 at 827.638 kb on + strand, within HMPREF1078_RS07050 at 827.639 kb on - strand, within HMPREF1078_RS07050 at 827.639 kb on - strand, within HMPREF1078_RS07050 at 827.681 kb on - strand, within HMPREF1078_RS07050 at 827.687 kb on + strand, within HMPREF1078_RS07050 at 827.747 kb on - strand, within HMPREF1078_RS07050 at 827.755 kb on + strand, within HMPREF1078_RS07050 at 827.906 kb on + strand, within HMPREF1078_RS07050 at 827.907 kb on - strand, within HMPREF1078_RS07050 at 828.041 kb on + strand at 828.055 kb on - strand at 828.060 kb on + strand at 828.070 kb on - strand at 828.163 kb on - strand at 828.241 kb on - strand, within HMPREF1078_RS07055 at 828.271 kb on + strand, within HMPREF1078_RS07055 at 828.272 kb on - strand, within HMPREF1078_RS07055 at 828.376 kb on + strand, within HMPREF1078_RS07055 at 828.381 kb on + strand, within HMPREF1078_RS07055 at 828.382 kb on - strand, within HMPREF1078_RS07055 at 828.392 kb on + strand, within HMPREF1078_RS07055 at 828.392 kb on + strand, within HMPREF1078_RS07055 at 828.393 kb on - strand, within HMPREF1078_RS07055 at 828.442 kb on - strand, within HMPREF1078_RS07055 at 828.485 kb on + strand, within HMPREF1078_RS07055 at 828.486 kb on - strand, within HMPREF1078_RS07055 at 828.489 kb on + strand, within HMPREF1078_RS07055 at 828.553 kb on - strand, within HMPREF1078_RS07055 at 828.565 kb on - strand, within HMPREF1078_RS07055 at 828.576 kb on + strand, within HMPREF1078_RS07055 at 828.576 kb on + strand, within HMPREF1078_RS07055 at 828.576 kb on + strand, within HMPREF1078_RS07055 at 828.576 kb on + strand, within HMPREF1078_RS07055 at 828.577 kb on - strand, within HMPREF1078_RS07055 at 828.577 kb on - strand, within HMPREF1078_RS07055 at 828.654 kb on + strand, within HMPREF1078_RS07055 at 828.654 kb on + strand, within HMPREF1078_RS07055 at 828.885 kb on + strand, within HMPREF1078_RS07055 at 828.916 kb on - strand, within HMPREF1078_RS07055 at 828.990 kb on + strand, within HMPREF1078_RS07055 at 829.018 kb on + strand, within HMPREF1078_RS07055 at 829.077 kb on + strand at 829.078 kb on - strand at 829.078 kb on - strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.142 kb on + strand at 829.143 kb on - strand at 829.151 kb on + strand at 829.152 kb on - strand at 829.157 kb on - strand at 829.184 kb on + strand at 829.185 kb on - strand at 829.185 kb on - strand at 829.239 kb on + strand at 829.286 kb on - strand at 829.309 kb on - strand at 829.332 kb on + strand at 829.332 kb on + strand at 829.333 kb on - strand at 829.341 kb on + strand at 829.342 kb on - strand at 829.342 kb on - strand at 829.342 kb on - strand at 829.342 kb on - strand at 829.373 kb on + strand, within HMPREF1078_RS07060 at 829.374 kb on - strand, within HMPREF1078_RS07060 at 829.374 kb on - strand, within HMPREF1078_RS07060 at 829.423 kb on - strand, within HMPREF1078_RS07060 at 829.450 kb on + strand, within HMPREF1078_RS07060 at 829.574 kb on + strand, within HMPREF1078_RS07060 at 829.575 kb on - strand, within HMPREF1078_RS07060 at 829.575 kb on - strand, within HMPREF1078_RS07060 at 829.650 kb on + strand, within HMPREF1078_RS07060 at 829.651 kb on - strand, within HMPREF1078_RS07060 at 829.651 kb on - strand, within HMPREF1078_RS07060 at 829.674 kb on - strand, within HMPREF1078_RS07060 at 829.723 kb on + strand, within HMPREF1078_RS07060 at 829.724 kb on - strand, within HMPREF1078_RS07060 at 829.725 kb on + strand, within HMPREF1078_RS07060 at 829.725 kb on + strand, within HMPREF1078_RS07060 at 829.726 kb on - strand, within HMPREF1078_RS07060 at 829.739 kb on + strand, within HMPREF1078_RS07060 at 829.739 kb on + strand, within HMPREF1078_RS07060 at 829.740 kb on - strand, within HMPREF1078_RS07060 at 829.740 kb on - strand, within HMPREF1078_RS07060 at 829.807 kb on - strand, within HMPREF1078_RS07060 at 829.893 kb on - strand, within HMPREF1078_RS07060 at 829.895 kb on - strand, within HMPREF1078_RS07060 at 829.896 kb on + strand, within HMPREF1078_RS07060 at 829.896 kb on + strand, within HMPREF1078_RS07060 at 829.945 kb on - strand, within HMPREF1078_RS07060 at 829.967 kb on - strand, within HMPREF1078_RS07060 at 829.975 kb on + strand, within HMPREF1078_RS07060 at 829.975 kb on + strand, within HMPREF1078_RS07060 at 829.975 kb on + strand, within HMPREF1078_RS07060 at 829.976 kb on - strand, within HMPREF1078_RS07060 at 830.052 kb on + strand at 830.100 kb on + strand at 830.101 kb on - strand at 830.115 kb on - strand at 830.125 kb on + strand at 830.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 827,120 + +0.1 827,237 - -0.2 827,237 - -1.2 827,374 - HMPREF1078_RS07050 0.15 -1.8 827,378 + HMPREF1078_RS07050 0.15 -0.8 827,415 + HMPREF1078_RS07050 0.20 -0.7 827,626 + HMPREF1078_RS07050 0.47 -1.6 827,638 + HMPREF1078_RS07050 0.48 -0.0 827,639 - HMPREF1078_RS07050 0.48 +0.1 827,639 - HMPREF1078_RS07050 0.48 -1.7 827,681 - HMPREF1078_RS07050 0.54 +1.3 827,687 + HMPREF1078_RS07050 0.54 +2.1 827,747 - HMPREF1078_RS07050 0.62 -1.8 827,755 + HMPREF1078_RS07050 0.63 +0.6 827,906 + HMPREF1078_RS07050 0.82 -0.7 827,907 - HMPREF1078_RS07050 0.82 -1.7 828,041 + +1.6 828,055 - -0.1 828,060 + +0.1 828,070 - +2.1 828,163 - -1.5 828,241 - HMPREF1078_RS07055 0.16 -1.8 828,271 + HMPREF1078_RS07055 0.19 +0.8 828,272 - HMPREF1078_RS07055 0.19 +0.5 828,376 + HMPREF1078_RS07055 0.28 -1.4 828,381 + HMPREF1078_RS07055 0.29 -0.0 828,382 - HMPREF1078_RS07055 0.29 -0.6 828,392 + HMPREF1078_RS07055 0.30 +0.7 828,392 + HMPREF1078_RS07055 0.30 +1.4 828,393 - HMPREF1078_RS07055 0.30 +0.9 828,442 - HMPREF1078_RS07055 0.34 -1.1 828,485 + HMPREF1078_RS07055 0.38 +0.8 828,486 - HMPREF1078_RS07055 0.38 -1.2 828,489 + HMPREF1078_RS07055 0.39 +1.1 828,553 - HMPREF1078_RS07055 0.45 -0.8 828,565 - HMPREF1078_RS07055 0.46 -0.2 828,576 + HMPREF1078_RS07055 0.47 +0.5 828,576 + HMPREF1078_RS07055 0.47 -1.6 828,576 + HMPREF1078_RS07055 0.47 -1.4 828,576 + HMPREF1078_RS07055 0.47 +2.5 828,577 - HMPREF1078_RS07055 0.47 -1.5 828,577 - HMPREF1078_RS07055 0.47 -0.2 828,654 + HMPREF1078_RS07055 0.54 -0.7 828,654 + HMPREF1078_RS07055 0.54 -0.2 828,885 + HMPREF1078_RS07055 0.75 -0.2 828,916 - HMPREF1078_RS07055 0.78 -0.6 828,990 + HMPREF1078_RS07055 0.84 -1.9 829,018 + HMPREF1078_RS07055 0.87 -0.1 829,077 + -1.1 829,078 - -0.2 829,078 - +0.5 829,120 - +2.1 829,120 - +0.9 829,142 + +1.1 829,143 - -0.7 829,151 + +0.8 829,152 - -1.6 829,157 - +0.3 829,184 + +0.8 829,185 - +0.8 829,185 - -0.8 829,239 + +2.1 829,286 - +0.5 829,309 - +1.1 829,332 + +2.2 829,332 + -0.9 829,333 - -0.7 829,341 + -0.8 829,342 - -0.2 829,342 - +1.5 829,342 - -1.4 829,342 - -1.6 829,373 + HMPREF1078_RS07060 0.10 +1.1 829,374 - HMPREF1078_RS07060 0.10 -2.0 829,374 - HMPREF1078_RS07060 0.10 -3.0 829,423 - HMPREF1078_RS07060 0.16 +2.1 829,450 + HMPREF1078_RS07060 0.20 +0.5 829,574 + HMPREF1078_RS07060 0.35 +1.5 829,575 - HMPREF1078_RS07060 0.35 -1.0 829,575 - HMPREF1078_RS07060 0.35 +0.3 829,650 + HMPREF1078_RS07060 0.45 +1.1 829,651 - HMPREF1078_RS07060 0.45 +1.1 829,651 - HMPREF1078_RS07060 0.45 -2.5 829,674 - HMPREF1078_RS07060 0.48 +1.1 829,723 + HMPREF1078_RS07060 0.54 +2.1 829,724 - HMPREF1078_RS07060 0.54 +0.5 829,725 + HMPREF1078_RS07060 0.54 -0.5 829,725 + HMPREF1078_RS07060 0.54 -0.5 829,726 - HMPREF1078_RS07060 0.54 -0.3 829,739 + HMPREF1078_RS07060 0.56 -0.6 829,739 + HMPREF1078_RS07060 0.56 -0.1 829,740 - HMPREF1078_RS07060 0.56 +1.1 829,740 - HMPREF1078_RS07060 0.56 +0.2 829,807 - HMPREF1078_RS07060 0.64 -0.9 829,893 - HMPREF1078_RS07060 0.75 +1.5 829,895 - HMPREF1078_RS07060 0.75 +1.3 829,896 + HMPREF1078_RS07060 0.75 -1.9 829,896 + HMPREF1078_RS07060 0.75 +0.5 829,945 - HMPREF1078_RS07060 0.81 +0.5 829,967 - HMPREF1078_RS07060 0.84 -0.9 829,975 + HMPREF1078_RS07060 0.85 -0.2 829,975 + HMPREF1078_RS07060 0.85 -0.5 829,975 + HMPREF1078_RS07060 0.85 +0.6 829,976 - HMPREF1078_RS07060 0.85 +0.3 830,052 + +0.6 830,100 + -3.3 830,101 - -0.6 830,115 - +0.4 830,125 + -1.5 830,125 + +0.5
Or see this region's nucleotide sequence