Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07035 and HMPREF1078_RS07040 are separated by 157 nucleotides HMPREF1078_RS07040 and HMPREF1078_RS07045 are separated by 197 nucleotides
HMPREF1078_RS07035: HMPREF1078_RS07035 - inorganic phosphate transporter, at 822,386 to 824,641
_RS07035
HMPREF1078_RS07040: HMPREF1078_RS07040 - hypothetical protein, at 824,799 to 825,677
_RS07040
HMPREF1078_RS07045: HMPREF1078_RS07045 - DUF5690 family protein, at 825,875 to 827,221
_RS07045
Position (kb) 824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 823.799 kb on - strand, within HMPREF1078_RS07035 at 823.896 kb on - strand, within HMPREF1078_RS07035 at 823.897 kb on + strand, within HMPREF1078_RS07035 at 823.925 kb on - strand, within HMPREF1078_RS07035 at 823.983 kb on + strand, within HMPREF1078_RS07035 at 824.032 kb on + strand, within HMPREF1078_RS07035 at 824.135 kb on - strand, within HMPREF1078_RS07035 at 824.241 kb on - strand, within HMPREF1078_RS07035 at 824.241 kb on - strand, within HMPREF1078_RS07035 at 824.241 kb on - strand, within HMPREF1078_RS07035 at 824.349 kb on + strand, within HMPREF1078_RS07035 at 824.350 kb on - strand, within HMPREF1078_RS07035 at 824.516 kb on - strand at 824.559 kb on + strand at 824.560 kb on - strand at 824.560 kb on - strand at 824.589 kb on + strand at 824.721 kb on + strand at 824.802 kb on + strand at 824.809 kb on - strand at 824.834 kb on - strand at 824.897 kb on + strand, within HMPREF1078_RS07040 at 824.897 kb on + strand, within HMPREF1078_RS07040 at 824.898 kb on - strand, within HMPREF1078_RS07040 at 824.899 kb on + strand, within HMPREF1078_RS07040 at 824.905 kb on + strand, within HMPREF1078_RS07040 at 824.905 kb on + strand, within HMPREF1078_RS07040 at 825.006 kb on + strand, within HMPREF1078_RS07040 at 825.052 kb on + strand, within HMPREF1078_RS07040 at 825.053 kb on - strand, within HMPREF1078_RS07040 at 825.101 kb on - strand, within HMPREF1078_RS07040 at 825.109 kb on - strand, within HMPREF1078_RS07040 at 825.203 kb on - strand, within HMPREF1078_RS07040 at 825.310 kb on + strand, within HMPREF1078_RS07040 at 825.321 kb on + strand, within HMPREF1078_RS07040 at 825.322 kb on - strand, within HMPREF1078_RS07040 at 825.322 kb on - strand, within HMPREF1078_RS07040 at 825.403 kb on - strand, within HMPREF1078_RS07040 at 825.403 kb on - strand, within HMPREF1078_RS07040 at 825.487 kb on - strand, within HMPREF1078_RS07040 at 825.714 kb on + strand at 825.748 kb on - strand at 825.755 kb on + strand at 825.755 kb on + strand at 825.756 kb on - strand at 825.787 kb on + strand at 825.787 kb on + strand at 825.787 kb on + strand at 825.797 kb on + strand at 825.875 kb on - strand at 825.981 kb on - strand at 825.981 kb on - strand at 826.001 kb on - strand at 826.043 kb on + strand, within HMPREF1078_RS07045 at 826.046 kb on - strand, within HMPREF1078_RS07045 at 826.046 kb on - strand, within HMPREF1078_RS07045 at 826.079 kb on + strand, within HMPREF1078_RS07045 at 826.079 kb on + strand, within HMPREF1078_RS07045 at 826.080 kb on - strand, within HMPREF1078_RS07045 at 826.080 kb on - strand, within HMPREF1078_RS07045 at 826.096 kb on + strand, within HMPREF1078_RS07045 at 826.211 kb on + strand, within HMPREF1078_RS07045 at 826.212 kb on - strand, within HMPREF1078_RS07045 at 826.217 kb on - strand, within HMPREF1078_RS07045 at 826.330 kb on + strand, within HMPREF1078_RS07045 at 826.330 kb on + strand, within HMPREF1078_RS07045 at 826.330 kb on + strand, within HMPREF1078_RS07045 at 826.370 kb on + strand, within HMPREF1078_RS07045 at 826.370 kb on + strand, within HMPREF1078_RS07045 at 826.370 kb on + strand, within HMPREF1078_RS07045 at 826.370 kb on + strand, within HMPREF1078_RS07045 at 826.371 kb on - strand, within HMPREF1078_RS07045 at 826.371 kb on - strand, within HMPREF1078_RS07045 at 826.371 kb on - strand, within HMPREF1078_RS07045 at 826.375 kb on + strand, within HMPREF1078_RS07045 at 826.375 kb on + strand, within HMPREF1078_RS07045 at 826.376 kb on - strand, within HMPREF1078_RS07045 at 826.621 kb on - strand, within HMPREF1078_RS07045
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 823,799 - HMPREF1078_RS07035 0.63 -1.6 823,896 - HMPREF1078_RS07035 0.67 -0.1 823,897 + HMPREF1078_RS07035 0.67 -0.9 823,925 - HMPREF1078_RS07035 0.68 +0.2 823,983 + HMPREF1078_RS07035 0.71 -1.4 824,032 + HMPREF1078_RS07035 0.73 +0.4 824,135 - HMPREF1078_RS07035 0.78 -1.0 824,241 - HMPREF1078_RS07035 0.82 -0.4 824,241 - HMPREF1078_RS07035 0.82 -2.1 824,241 - HMPREF1078_RS07035 0.82 +0.4 824,349 + HMPREF1078_RS07035 0.87 +1.2 824,350 - HMPREF1078_RS07035 0.87 -0.7 824,516 - -1.6 824,559 + -0.2 824,560 - +1.2 824,560 - +0.1 824,589 + +0.5 824,721 + +0.3 824,802 + -0.2 824,809 - -2.9 824,834 - -0.3 824,897 + HMPREF1078_RS07040 0.11 -1.8 824,897 + HMPREF1078_RS07040 0.11 +1.6 824,898 - HMPREF1078_RS07040 0.11 -0.7 824,899 + HMPREF1078_RS07040 0.11 -1.2 824,905 + HMPREF1078_RS07040 0.12 -0.8 824,905 + HMPREF1078_RS07040 0.12 +1.1 825,006 + HMPREF1078_RS07040 0.24 +0.8 825,052 + HMPREF1078_RS07040 0.29 +2.7 825,053 - HMPREF1078_RS07040 0.29 -1.5 825,101 - HMPREF1078_RS07040 0.34 +0.5 825,109 - HMPREF1078_RS07040 0.35 -0.4 825,203 - HMPREF1078_RS07040 0.46 +1.1 825,310 + HMPREF1078_RS07040 0.58 -0.7 825,321 + HMPREF1078_RS07040 0.59 -0.7 825,322 - HMPREF1078_RS07040 0.59 -0.3 825,322 - HMPREF1078_RS07040 0.59 -1.6 825,403 - HMPREF1078_RS07040 0.69 -0.5 825,403 - HMPREF1078_RS07040 0.69 -2.0 825,487 - HMPREF1078_RS07040 0.78 +0.1 825,714 + -1.1 825,748 - -0.5 825,755 + +0.1 825,755 + -1.8 825,756 - -1.1 825,787 + -1.8 825,787 + -3.0 825,787 + -0.2 825,797 + +2.2 825,875 - -0.5 825,981 - -0.3 825,981 - +1.6 826,001 - +1.3 826,043 + HMPREF1078_RS07045 0.12 +1.4 826,046 - HMPREF1078_RS07045 0.13 +0.7 826,046 - HMPREF1078_RS07045 0.13 -0.5 826,079 + HMPREF1078_RS07045 0.15 +0.5 826,079 + HMPREF1078_RS07045 0.15 -0.0 826,080 - HMPREF1078_RS07045 0.15 +2.9 826,080 - HMPREF1078_RS07045 0.15 +0.1 826,096 + HMPREF1078_RS07045 0.16 -1.7 826,211 + HMPREF1078_RS07045 0.25 +2.1 826,212 - HMPREF1078_RS07045 0.25 -2.7 826,217 - HMPREF1078_RS07045 0.25 +0.4 826,330 + HMPREF1078_RS07045 0.34 +0.5 826,330 + HMPREF1078_RS07045 0.34 -1.6 826,330 + HMPREF1078_RS07045 0.34 -0.2 826,370 + HMPREF1078_RS07045 0.37 -0.3 826,370 + HMPREF1078_RS07045 0.37 -2.1 826,370 + HMPREF1078_RS07045 0.37 +1.2 826,370 + HMPREF1078_RS07045 0.37 -1.4 826,371 - HMPREF1078_RS07045 0.37 +1.7 826,371 - HMPREF1078_RS07045 0.37 +0.0 826,371 - HMPREF1078_RS07045 0.37 -2.0 826,375 + HMPREF1078_RS07045 0.37 +1.1 826,375 + HMPREF1078_RS07045 0.37 -1.1 826,376 - HMPREF1078_RS07045 0.37 +2.3 826,621 - HMPREF1078_RS07045 0.55 -1.0
Or see this region's nucleotide sequence