Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05905 and HMPREF1078_RS05910 are separated by 82 nucleotides HMPREF1078_RS05910 and HMPREF1078_RS05915 are separated by 271 nucleotides
HMPREF1078_RS05905: HMPREF1078_RS05905 - Na/Pi cotransporter family protein, at 512,655 to 514,343
_RS05905
HMPREF1078_RS05910: HMPREF1078_RS05910 - nucleoside kinase, at 514,426 to 516,093
_RS05910
HMPREF1078_RS05915: HMPREF1078_RS05915 - ATP-binding protein, at 516,365 to 518,527
_RS05915
Position (kb) 514
515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 513.465 kb on + strand, within HMPREF1078_RS05905 at 513.570 kb on - strand, within HMPREF1078_RS05905 at 513.642 kb on - strand, within HMPREF1078_RS05905 at 513.717 kb on - strand, within HMPREF1078_RS05905 at 514.140 kb on - strand, within HMPREF1078_RS05905 at 514.308 kb on + strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.422 kb on + strand at 514.423 kb on - strand at 514.423 kb on - strand at 514.464 kb on + strand at 514.464 kb on + strand at 514.464 kb on + strand at 514.465 kb on - strand at 514.465 kb on - strand at 514.468 kb on + strand at 514.508 kb on - strand at 514.557 kb on - strand at 514.557 kb on - strand at 514.564 kb on - strand at 514.564 kb on - strand at 514.579 kb on - strand at 514.612 kb on + strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.649 kb on - strand, within HMPREF1078_RS05910 at 514.668 kb on + strand, within HMPREF1078_RS05910 at 514.742 kb on - strand, within HMPREF1078_RS05910 at 514.745 kb on - strand, within HMPREF1078_RS05910 at 514.772 kb on + strand, within HMPREF1078_RS05910 at 514.937 kb on - strand, within HMPREF1078_RS05910 at 514.938 kb on + strand, within HMPREF1078_RS05910 at 514.938 kb on + strand, within HMPREF1078_RS05910 at 515.006 kb on - strand, within HMPREF1078_RS05910 at 515.107 kb on - strand, within HMPREF1078_RS05910 at 515.123 kb on - strand, within HMPREF1078_RS05910 at 515.455 kb on + strand, within HMPREF1078_RS05910 at 515.486 kb on + strand, within HMPREF1078_RS05910 at 515.491 kb on + strand, within HMPREF1078_RS05910 at 515.621 kb on + strand, within HMPREF1078_RS05910 at 515.622 kb on - strand, within HMPREF1078_RS05910 at 515.674 kb on + strand, within HMPREF1078_RS05910 at 515.676 kb on + strand, within HMPREF1078_RS05910 at 515.689 kb on + strand, within HMPREF1078_RS05910 at 515.689 kb on + strand, within HMPREF1078_RS05910 at 515.727 kb on + strand, within HMPREF1078_RS05910 at 515.728 kb on - strand, within HMPREF1078_RS05910 at 515.728 kb on - strand, within HMPREF1078_RS05910 at 515.903 kb on + strand, within HMPREF1078_RS05910 at 516.011 kb on - strand at 516.138 kb on + strand at 516.138 kb on + strand at 516.138 kb on + strand at 516.231 kb on + strand at 516.235 kb on + strand at 516.235 kb on + strand at 516.236 kb on - strand at 516.236 kb on - strand at 516.236 kb on - strand at 516.236 kb on - strand at 516.259 kb on - strand at 516.261 kb on + strand at 516.386 kb on - strand at 516.549 kb on - strand at 516.563 kb on - strand at 516.765 kb on - strand, within HMPREF1078_RS05915 at 516.787 kb on + strand, within HMPREF1078_RS05915 at 516.787 kb on + strand, within HMPREF1078_RS05915 at 516.788 kb on - strand, within HMPREF1078_RS05915 at 516.788 kb on - strand, within HMPREF1078_RS05915 at 516.788 kb on - strand, within HMPREF1078_RS05915 at 516.855 kb on - strand, within HMPREF1078_RS05915 at 516.857 kb on - strand, within HMPREF1078_RS05915 at 516.949 kb on + strand, within HMPREF1078_RS05915
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 513,465 + HMPREF1078_RS05905 0.48 -1.2 513,570 - HMPREF1078_RS05905 0.54 +0.5 513,642 - HMPREF1078_RS05905 0.58 -0.5 513,717 - HMPREF1078_RS05905 0.63 +2.1 514,140 - HMPREF1078_RS05905 0.88 +2.1 514,308 + +2.1 514,367 - -0.5 514,367 - -0.2 514,367 - +2.1 514,367 - +2.1 514,422 + +2.1 514,423 - +0.7 514,423 - +0.8 514,464 + +0.1 514,464 + +0.1 514,464 + -1.2 514,465 - +3.1 514,465 - -0.7 514,468 + -0.5 514,508 - -1.2 514,557 - -0.2 514,557 - +1.5 514,564 - +0.8 514,564 - -0.6 514,579 - +0.3 514,612 + HMPREF1078_RS05910 0.11 -2.5 514,613 - HMPREF1078_RS05910 0.11 -0.3 514,613 - HMPREF1078_RS05910 0.11 +0.9 514,613 - HMPREF1078_RS05910 0.11 -1.8 514,613 - HMPREF1078_RS05910 0.11 -0.0 514,648 + HMPREF1078_RS05910 0.13 -2.0 514,648 + HMPREF1078_RS05910 0.13 -1.1 514,648 + HMPREF1078_RS05910 0.13 +1.6 514,648 + HMPREF1078_RS05910 0.13 +1.5 514,648 + HMPREF1078_RS05910 0.13 +1.1 514,649 - HMPREF1078_RS05910 0.13 +3.1 514,668 + HMPREF1078_RS05910 0.15 +1.1 514,742 - HMPREF1078_RS05910 0.19 -2.0 514,745 - HMPREF1078_RS05910 0.19 -1.6 514,772 + HMPREF1078_RS05910 0.21 +2.1 514,937 - HMPREF1078_RS05910 0.31 +0.7 514,938 + HMPREF1078_RS05910 0.31 +1.5 514,938 + HMPREF1078_RS05910 0.31 -0.2 515,006 - HMPREF1078_RS05910 0.35 -1.6 515,107 - HMPREF1078_RS05910 0.41 -1.0 515,123 - HMPREF1078_RS05910 0.42 +4.8 515,455 + HMPREF1078_RS05910 0.62 -0.5 515,486 + HMPREF1078_RS05910 0.64 -1.6 515,491 + HMPREF1078_RS05910 0.64 +0.1 515,621 + HMPREF1078_RS05910 0.72 +0.4 515,622 - HMPREF1078_RS05910 0.72 +0.7 515,674 + HMPREF1078_RS05910 0.75 -0.2 515,676 + HMPREF1078_RS05910 0.75 +1.7 515,689 + HMPREF1078_RS05910 0.76 -1.2 515,689 + HMPREF1078_RS05910 0.76 +0.7 515,727 + HMPREF1078_RS05910 0.78 -1.8 515,728 - HMPREF1078_RS05910 0.78 +1.1 515,728 - HMPREF1078_RS05910 0.78 -0.0 515,903 + HMPREF1078_RS05910 0.89 -0.3 516,011 - +1.1 516,138 + -1.3 516,138 + -0.1 516,138 + -0.2 516,231 + -1.9 516,235 + -1.5 516,235 + -1.1 516,236 - -1.5 516,236 - +0.1 516,236 - -0.9 516,236 - +2.4 516,259 - +0.1 516,261 + +0.7 516,386 - +0.4 516,549 - -0.7 516,563 - +1.4 516,765 - HMPREF1078_RS05915 0.18 -1.5 516,787 + HMPREF1078_RS05915 0.20 +0.3 516,787 + HMPREF1078_RS05915 0.20 -0.3 516,788 - HMPREF1078_RS05915 0.20 -1.3 516,788 - HMPREF1078_RS05915 0.20 -0.3 516,788 - HMPREF1078_RS05915 0.20 -0.6 516,855 - HMPREF1078_RS05915 0.23 +2.1 516,857 - HMPREF1078_RS05915 0.23 -1.7 516,949 + HMPREF1078_RS05915 0.27 +1.1
Or see this region's nucleotide sequence