Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04530

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
138,178	-		HMPREF1078_RS04520	0.64	+1.2
138,178	-		HMPREF1078_RS04520	0.64	-1.1
138,185	+		HMPREF1078_RS04520	0.65	+1.2
138,185	+		HMPREF1078_RS04520	0.65	-0.1
138,185	+		HMPREF1078_RS04520	0.65	+2.2
138,186	-		HMPREF1078_RS04520	0.65	-2.1
138,186	-		HMPREF1078_RS04520	0.65	+0.2
138,186	-		HMPREF1078_RS04520	0.65	+0.2
138,186	-		HMPREF1078_RS04520	0.65	-0.4
138,189	-		HMPREF1078_RS04520	0.65	-1.8
138,189	-		HMPREF1078_RS04520	0.65	-1.0
138,189	-		HMPREF1078_RS04520	0.65	+1.2
138,211	-		HMPREF1078_RS04520	0.67	-0.4
138,262	-		HMPREF1078_RS04520	0.72	-0.2
138,284	-		HMPREF1078_RS04520	0.74	-0.1
138,284	-		HMPREF1078_RS04520	0.74	+2.2
138,284	-		HMPREF1078_RS04520	0.74	+2.2
138,284	-		HMPREF1078_RS04520	0.74	+1.2
138,284	-		HMPREF1078_RS04520	0.74	-0.4
138,304	-		HMPREF1078_RS04520	0.75	+1.2
138,382	-		HMPREF1078_RS04520	0.82	+1.2
138,430	-		HMPREF1078_RS04520	0.86	-1.4
138,573	-				+1.2
138,593	+				+0.6
138,594	-				-1.3
138,594	-				-1.8
138,604	-				-1.0
138,604	-				-0.1
138,623	+				+0.6
138,623	+				+2.2
138,624	-				+2.2
138,624	-				+2.2
138,634	-				-1.8
138,655	-				-2.5
138,699	+		HMPREF1078_RS04525	0.14	+2.2
138,700	-		HMPREF1078_RS04525	0.14	-0.8
138,704	+		HMPREF1078_RS04525	0.15	-0.1
138,704	+		HMPREF1078_RS04525	0.15	-0.1
138,704	+		HMPREF1078_RS04525	0.15	+2.2
138,705	-		HMPREF1078_RS04525	0.15	-0.4
138,705	-		HMPREF1078_RS04525	0.15	-1.5
138,723	-		HMPREF1078_RS04525	0.18	-2.2
138,723	-		HMPREF1078_RS04525	0.18	+1.2
138,774	+		HMPREF1078_RS04525	0.28	-0.4
138,774	+		HMPREF1078_RS04525	0.28	+1.2
138,774	+		HMPREF1078_RS04525	0.28	+2.2
138,774	+		HMPREF1078_RS04525	0.28	+0.6
138,775	-		HMPREF1078_RS04525	0.28	-1.1
138,775	-		HMPREF1078_RS04525	0.28	+1.2
138,775	-		HMPREF1078_RS04525	0.28	-0.1
138,776	+		HMPREF1078_RS04525	0.28	-1.4
138,776	+		HMPREF1078_RS04525	0.28	+0.2
138,776	+		HMPREF1078_RS04525	0.28	+0.6
138,776	+		HMPREF1078_RS04525	0.28	+0.6
138,776	+		HMPREF1078_RS04525	0.28	+0.2
138,776	+		HMPREF1078_RS04525	0.28	-1.1
138,776	+		HMPREF1078_RS04525	0.28	-0.6
138,777	-		HMPREF1078_RS04525	0.28	+0.6
138,777	-		HMPREF1078_RS04525	0.28	-0.4
138,777	-		HMPREF1078_RS04525	0.28	+0.6
138,777	-		HMPREF1078_RS04525	0.28	-1.1
138,777	-		HMPREF1078_RS04525	0.28	+2.2
138,777	-		HMPREF1078_RS04525	0.28	-1.0
138,777	-		HMPREF1078_RS04525	0.28	-1.0
138,845	+		HMPREF1078_RS04525	0.40	-0.8
138,845	+		HMPREF1078_RS04525	0.40	+1.2
138,845	+		HMPREF1078_RS04525	0.40	-1.0
138,845	+		HMPREF1078_RS04525	0.40	+2.2
138,846	-		HMPREF1078_RS04525	0.41	-0.4
138,846	-		HMPREF1078_RS04525	0.41	-0.8
138,846	-		HMPREF1078_RS04525	0.41	-1.9
138,846	-		HMPREF1078_RS04525	0.41	+2.2
138,870	+		HMPREF1078_RS04525	0.45	+0.2
138,870	+		HMPREF1078_RS04525	0.45	-1.4
138,871	-		HMPREF1078_RS04525	0.45	+1.2
138,871	-		HMPREF1078_RS04525	0.45	+2.2
138,886	-		HMPREF1078_RS04525	0.48	-1.1
138,891	-		HMPREF1078_RS04525	0.49	-0.8
138,891	-		HMPREF1078_RS04525	0.49	-1.1
138,891	-		HMPREF1078_RS04525	0.49	-0.4
138,891	-		HMPREF1078_RS04525	0.49	+1.2
138,911	-		HMPREF1078_RS04525	0.52	+2.2
138,911	-		HMPREF1078_RS04525	0.52	-0.1
138,911	-		HMPREF1078_RS04525	0.52	-0.8
139,044	+		HMPREF1078_RS04525	0.76	+2.2
139,045	-		HMPREF1078_RS04525	0.77	+0.6
139,045	-		HMPREF1078_RS04525	0.77	-0.1
139,046	+		HMPREF1078_RS04525	0.77	+0.4
139,046	+		HMPREF1078_RS04525	0.77	+2.2
139,046	+		HMPREF1078_RS04525	0.77	+1.3
139,046	+		HMPREF1078_RS04525	0.77	+0.6
139,046	+		HMPREF1078_RS04525	0.77	-2.1
139,046	+		HMPREF1078_RS04525	0.77	+0.1
139,047	-		HMPREF1078_RS04525	0.77	+0.1
139,047	-		HMPREF1078_RS04525	0.77	-0.4
139,047	-		HMPREF1078_RS04525	0.77	-1.1
139,047	-		HMPREF1078_RS04525	0.77	+1.5
139,047	-		HMPREF1078_RS04525	0.77	+1.0
139,047	-		HMPREF1078_RS04525	0.77	-0.9
139,047	-		HMPREF1078_RS04525	0.77	-1.8
139,048	+		HMPREF1078_RS04525	0.77	-0.1
139,048	+		HMPREF1078_RS04525	0.77	-1.3
139,048	+		HMPREF1078_RS04525	0.77	-1.3
139,048	+		HMPREF1078_RS04525	0.77	+0.2
139,048	+		HMPREF1078_RS04525	0.77	+1.6
139,048	+		HMPREF1078_RS04525	0.77	-1.0
139,049	-		HMPREF1078_RS04525	0.77	+1.2
139,115	-		HMPREF1078_RS04525	0.89	-0.1
139,190	+				-1.7
139,190	+				-2.7
139,190	+				-1.7
139,190	+				-1.0
139,191	-				+0.4
139,191	-				-1.5
139,191	-				-1.3
139,191	-				-0.1
139,194	-				-1.9
139,194	-				-2.9
139,194	-				-0.4
139,194	-				-2.0
139,203	-				-1.0
139,224	+		HMPREF1078_RS04530	0.11	-0.6
139,279	+		HMPREF1078_RS04530	0.21	-0.2
139,279	+		HMPREF1078_RS04530	0.21	+4.5
139,284	+		HMPREF1078_RS04530	0.22	-1.2
139,284	+		HMPREF1078_RS04530	0.22	-0.1
139,284	+		HMPREF1078_RS04530	0.22	-2.9
139,300	-		HMPREF1078_RS04530	0.25	-1.1
139,414	-		HMPREF1078_RS04530	0.46	-0.9
139,414	-		HMPREF1078_RS04530	0.46	+1.2
139,458	+		HMPREF1078_RS04530	0.54	+0.2
139,471	+		HMPREF1078_RS04530	0.56	+0.6
139,481	+		HMPREF1078_RS04530	0.58	-0.9
139,481	+		HMPREF1078_RS04530	0.58	-3.6
139,597	+		HMPREF1078_RS04530	0.79	+1.1
139,692	-				+0.2
139,692	-				-0.4
139,714	+				-1.4
139,716	+				+0.6
139,716	+				+1.2
139,717	-				+0.3
139,718	+				-0.4
139,718	+				+1.6
139,719	-				-0.6
139,719	-				-1.9
139,721	-				+0.3
139,801	+				+0.2
139,801	+				+0.2
139,824	-				+2.2
139,832	-				+0.2
139,851	-				-0.0
139,895	-				+1.0
139,915	-				+1.3
139,915	-				+2.2
139,931	-				+0.8
139,940	+				+1.2
139,940	+				-0.6
139,950	-				-2.0
140,054	+		HMPREF1078_RS04535	0.17	+0.6
140,121	-		HMPREF1078_RS04535	0.26	+0.6
140,140	+		HMPREF1078_RS04535	0.29	+0.9
140,163	+		HMPREF1078_RS04535	0.32	-0.1
140,197	+		HMPREF1078_RS04535	0.36	+1.1
140,213	-		HMPREF1078_RS04535	0.39	-1.2
140,213	-		HMPREF1078_RS04535	0.39	+0.5
140,228	+		HMPREF1078_RS04535	0.41	+0.4
140,228	+		HMPREF1078_RS04535	0.41	+1.2
140,228	+		HMPREF1078_RS04535	0.41	+2.8
140,229	-		HMPREF1078_RS04535	0.41	-2.2
140,229	-		HMPREF1078_RS04535	0.41	+1.0
140,229	-		HMPREF1078_RS04535	0.41	+1.0
140,229	-		HMPREF1078_RS04535	0.41	-0.4
140,229	-		HMPREF1078_RS04535	0.41	+2.8
140,229	-		HMPREF1078_RS04535	0.41	-0.6
140,229	-		HMPREF1078_RS04535	0.41	+3.0
140,229	-		HMPREF1078_RS04535	0.41	+1.2
140,229	-		HMPREF1078_RS04535	0.41	+2.0
140,230	+		HMPREF1078_RS04535	0.41	-0.2
140,230	+		HMPREF1078_RS04535	0.41	+0.6
140,231	-		HMPREF1078_RS04535	0.41	+1.0
140,259	-		HMPREF1078_RS04535	0.45	+1.1
140,291	+		HMPREF1078_RS04535	0.49	+1.9
140,291	+		HMPREF1078_RS04535	0.49	+3.8
140,303	-		HMPREF1078_RS04535	0.51	+0.6
140,303	-		HMPREF1078_RS04535	0.51	+1.4
140,367	+		HMPREF1078_RS04535	0.60	+1.3
140,417	+		HMPREF1078_RS04535	0.66	+0.9
140,417	+		HMPREF1078_RS04535	0.66	-0.7
140,417	+		HMPREF1078_RS04535	0.66	-0.8
140,417	+		HMPREF1078_RS04535	0.66	+1.3
140,418	-		HMPREF1078_RS04535	0.67	+0.2
140,418	-		HMPREF1078_RS04535	0.67	-1.3
140,418	-		HMPREF1078_RS04535	0.67	+0.6
140,418	-		HMPREF1078_RS04535	0.67	+1.4
140,418	-		HMPREF1078_RS04535	0.67	+0.3
140,418	-		HMPREF1078_RS04535	0.67	-0.7
140,418	-		HMPREF1078_RS04535	0.67	+1.5
140,418	-		HMPREF1078_RS04535	0.67	+0.8
140,419	+		HMPREF1078_RS04535	0.67	+2.6
140,419	+		HMPREF1078_RS04535	0.67	+0.8
140,420	-		HMPREF1078_RS04535	0.67	-0.4
140,420	-		HMPREF1078_RS04535	0.67	+0.4
140,420	-		HMPREF1078_RS04535	0.67	-0.8
140,420	-		HMPREF1078_RS04535	0.67	+2.2
140,421	+		HMPREF1078_RS04535	0.67	-2.0
140,421	+		HMPREF1078_RS04535	0.67	+2.1
140,421	+		HMPREF1078_RS04535	0.67	+2.8
140,422	-		HMPREF1078_RS04535	0.67	+1.8
140,422	-		HMPREF1078_RS04535	0.67	+1.6
140,423	+		HMPREF1078_RS04535	0.67	+0.6
140,423	+		HMPREF1078_RS04535	0.67	+1.0
140,424	-		HMPREF1078_RS04535	0.67	+0.3
140,462	-		HMPREF1078_RS04535	0.73	+1.0
140,462	-		HMPREF1078_RS04535	0.73	-0.4
140,487	-		HMPREF1078_RS04535	0.76	+1.4
140,504	+		HMPREF1078_RS04535	0.78	+1.6
140,504	+		HMPREF1078_RS04535	0.78	-3.4
140,504	+		HMPREF1078_RS04535	0.78	+2.5
140,504	+		HMPREF1078_RS04535	0.78	-0.1
140,505	-		HMPREF1078_RS04535	0.78	+0.2
140,505	-		HMPREF1078_RS04535	0.78	+1.9
140,506	+		HMPREF1078_RS04535	0.79	-1.5
140,506	+		HMPREF1078_RS04535	0.79	-0.8
140,506	+		HMPREF1078_RS04535	0.79	+0.9
140,506	+		HMPREF1078_RS04535	0.79	-1.5
140,507	-		HMPREF1078_RS04535	0.79	+0.9
140,507	-		HMPREF1078_RS04535	0.79	+1.2
140,510	-		HMPREF1078_RS04535	0.79	+1.9
140,510	-		HMPREF1078_RS04535	0.79	+0.2
140,516	+		HMPREF1078_RS04535	0.80	+1.9
140,517	-		HMPREF1078_RS04535	0.80	+1.0
140,532	+		HMPREF1078_RS04535	0.82	+2.0
140,538	+		HMPREF1078_RS04535	0.83	+1.7
140,539	-		HMPREF1078_RS04535	0.83	-2.1
140,555	+		HMPREF1078_RS04535	0.85	+1.9
140,555	+		HMPREF1078_RS04535	0.85	+2.2
140,556	-		HMPREF1078_RS04535	0.85	+1.2
140,556	-		HMPREF1078_RS04535	0.85	+0.2
140,575	+		HMPREF1078_RS04535	0.88	+1.2
140,576	-		HMPREF1078_RS04535	0.88	+0.3
140,613	-				+1.4
140,620	-				-0.3
140,637	+				-0.6
140,637	+				+0.6
140,643	-				+1.0
140,643	-				-0.4
140,663	+				-0.1
140,664	-				+2.3
140,664	-				+0.8
140,664	-				+0.2
140,670	+				-1.8
140,670	+				+0.6
140,670	+				-0.6
140,671	-				+3.8
140,671	-				+1.6
140,671	-				+0.7
140,674	-				+0.4
140,675	-				+0.4