Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03255 and HMPREF1078_RS03260 are separated by 38 nucleotides HMPREF1078_RS03260 and HMPREF1078_RS03265 are separated by 14 nucleotides HMPREF1078_RS03265 and HMPREF1078_RS03270 are separated by 34 nucleotides
HMPREF1078_RS03255: HMPREF1078_RS03255 - hypothetical protein, at 770,744 to 772,552
_RS03255
HMPREF1078_RS03260: HMPREF1078_RS03260 - hypothetical protein, at 772,591 to 773,157
_RS03260
HMPREF1078_RS03265: HMPREF1078_RS03265 - hypothetical protein, at 773,172 to 773,642
_RS03265
HMPREF1078_RS03270: HMPREF1078_RS03270 - energy transducer TonB, at 773,677 to 775,026
_RS03270
Position (kb) 773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 772.178 kb on + strand, within HMPREF1078_RS03255 at 772.182 kb on + strand, within HMPREF1078_RS03255 at 772.223 kb on - strand, within HMPREF1078_RS03255 at 772.223 kb on - strand, within HMPREF1078_RS03255 at 772.300 kb on - strand, within HMPREF1078_RS03255 at 772.300 kb on - strand, within HMPREF1078_RS03255 at 772.310 kb on + strand, within HMPREF1078_RS03255 at 772.332 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.389 kb on + strand at 772.425 kb on + strand at 772.444 kb on + strand at 772.445 kb on - strand at 772.445 kb on - strand at 772.453 kb on - strand at 772.480 kb on + strand at 772.480 kb on + strand at 772.496 kb on - strand at 772.519 kb on + strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.540 kb on - strand at 772.550 kb on + strand at 772.554 kb on + strand at 772.591 kb on - strand at 772.645 kb on - strand at 772.729 kb on - strand, within HMPREF1078_RS03260 at 772.749 kb on + strand, within HMPREF1078_RS03260 at 772.755 kb on - strand, within HMPREF1078_RS03260 at 772.760 kb on - strand, within HMPREF1078_RS03260 at 772.810 kb on + strand, within HMPREF1078_RS03260 at 772.811 kb on - strand, within HMPREF1078_RS03260 at 772.848 kb on - strand, within HMPREF1078_RS03260 at 772.848 kb on - strand, within HMPREF1078_RS03260 at 772.850 kb on - strand, within HMPREF1078_RS03260 at 772.850 kb on - strand, within HMPREF1078_RS03260 at 772.873 kb on - strand, within HMPREF1078_RS03260 at 772.924 kb on - strand, within HMPREF1078_RS03260 at 772.978 kb on - strand, within HMPREF1078_RS03260 at 772.985 kb on - strand, within HMPREF1078_RS03260 at 773.002 kb on - strand, within HMPREF1078_RS03260 at 773.018 kb on + strand, within HMPREF1078_RS03260 at 773.018 kb on + strand, within HMPREF1078_RS03260 at 773.066 kb on + strand, within HMPREF1078_RS03260 at 773.066 kb on - strand, within HMPREF1078_RS03260 at 773.110 kb on - strand at 773.172 kb on - strand at 773.212 kb on + strand at 773.213 kb on - strand at 773.297 kb on + strand, within HMPREF1078_RS03265 at 773.324 kb on + strand, within HMPREF1078_RS03265 at 773.325 kb on - strand, within HMPREF1078_RS03265 at 773.325 kb on - strand, within HMPREF1078_RS03265 at 773.364 kb on + strand, within HMPREF1078_RS03265 at 773.364 kb on + strand, within HMPREF1078_RS03265 at 773.374 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.472 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.492 kb on + strand, within HMPREF1078_RS03265 at 773.493 kb on - strand, within HMPREF1078_RS03265 at 773.517 kb on + strand, within HMPREF1078_RS03265 at 773.518 kb on - strand, within HMPREF1078_RS03265 at 773.521 kb on - strand, within HMPREF1078_RS03265 at 773.529 kb on - strand, within HMPREF1078_RS03265 at 773.532 kb on + strand, within HMPREF1078_RS03265 at 773.549 kb on + strand, within HMPREF1078_RS03265 at 773.555 kb on + strand, within HMPREF1078_RS03265 at 773.556 kb on - strand, within HMPREF1078_RS03265 at 773.633 kb on - strand at 773.673 kb on + strand at 773.694 kb on - strand at 773.695 kb on + strand at 773.695 kb on + strand at 773.696 kb on - strand at 773.696 kb on - strand at 773.696 kb on - strand at 773.696 kb on - strand at 773.727 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.782 kb on + strand at 773.782 kb on + strand at 773.782 kb on + strand at 773.783 kb on - strand at 773.783 kb on - strand at 773.783 kb on - strand at 773.783 kb on - strand at 773.783 kb on - strand at 773.835 kb on + strand, within HMPREF1078_RS03270 at 773.842 kb on + strand, within HMPREF1078_RS03270 at 773.914 kb on + strand, within HMPREF1078_RS03270 at 774.083 kb on - strand, within HMPREF1078_RS03270 at 774.085 kb on - strand, within HMPREF1078_RS03270 at 774.085 kb on - strand, within HMPREF1078_RS03270 at 774.085 kb on - strand, within HMPREF1078_RS03270 at 774.117 kb on + strand, within HMPREF1078_RS03270 at 774.118 kb on - strand, within HMPREF1078_RS03270 at 774.136 kb on - strand, within HMPREF1078_RS03270 at 774.136 kb on - strand, within HMPREF1078_RS03270 at 774.298 kb on + strand, within HMPREF1078_RS03270 at 774.364 kb on - strand, within HMPREF1078_RS03270 at 774.403 kb on + strand, within HMPREF1078_RS03270 at 774.403 kb on + strand, within HMPREF1078_RS03270 at 774.404 kb on - strand, within HMPREF1078_RS03270 at 774.427 kb on + strand, within HMPREF1078_RS03270 at 774.428 kb on - strand, within HMPREF1078_RS03270 at 774.438 kb on + strand, within HMPREF1078_RS03270 at 774.439 kb on - strand, within HMPREF1078_RS03270 at 774.466 kb on + strand, within HMPREF1078_RS03270 at 774.466 kb on + strand, within HMPREF1078_RS03270 at 774.467 kb on - strand, within HMPREF1078_RS03270 at 774.469 kb on + strand, within HMPREF1078_RS03270 at 774.469 kb on + strand, within HMPREF1078_RS03270 at 774.470 kb on - strand, within HMPREF1078_RS03270 at 774.470 kb on - strand, within HMPREF1078_RS03270 at 774.557 kb on - strand, within HMPREF1078_RS03270 at 774.557 kb on - strand, within HMPREF1078_RS03270 at 774.622 kb on + strand, within HMPREF1078_RS03270
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 772,178 + HMPREF1078_RS03255 0.79 -1.3 772,182 + HMPREF1078_RS03255 0.79 -1.3 772,223 - HMPREF1078_RS03255 0.82 +0.6 772,223 - HMPREF1078_RS03255 0.82 -0.2 772,300 - HMPREF1078_RS03255 0.86 -1.0 772,300 - HMPREF1078_RS03255 0.86 -0.2 772,310 + HMPREF1078_RS03255 0.87 -0.9 772,332 - HMPREF1078_RS03255 0.88 -0.7 772,334 - HMPREF1078_RS03255 0.88 -0.4 772,334 - HMPREF1078_RS03255 0.88 -0.4 772,334 - HMPREF1078_RS03255 0.88 +0.6 772,389 + +1.0 772,425 + -0.0 772,444 + +0.6 772,445 - +0.1 772,445 - +1.3 772,453 - -0.9 772,480 + +2.1 772,480 + -0.7 772,496 - +0.1 772,519 + +0.3 772,520 - +0.1 772,520 - -0.3 772,520 - +1.6 772,520 - -0.7 772,520 - +1.6 772,540 - -0.7 772,550 + -2.6 772,554 + -0.7 772,591 - +0.6 772,645 - +0.6 772,729 - HMPREF1078_RS03260 0.24 +2.1 772,749 + HMPREF1078_RS03260 0.28 +1.1 772,755 - HMPREF1078_RS03260 0.29 +0.6 772,760 - HMPREF1078_RS03260 0.30 +0.2 772,810 + HMPREF1078_RS03260 0.39 +3.2 772,811 - HMPREF1078_RS03260 0.39 -1.2 772,848 - HMPREF1078_RS03260 0.45 -0.2 772,848 - HMPREF1078_RS03260 0.45 -1.8 772,850 - HMPREF1078_RS03260 0.46 +0.6 772,850 - HMPREF1078_RS03260 0.46 -1.2 772,873 - HMPREF1078_RS03260 0.50 +0.8 772,924 - HMPREF1078_RS03260 0.59 +1.0 772,978 - HMPREF1078_RS03260 0.68 +2.1 772,985 - HMPREF1078_RS03260 0.69 +0.9 773,002 - HMPREF1078_RS03260 0.72 +0.3 773,018 + HMPREF1078_RS03260 0.75 +3.7 773,018 + HMPREF1078_RS03260 0.75 +0.6 773,066 + HMPREF1078_RS03260 0.84 -1.4 773,066 - HMPREF1078_RS03260 0.84 +0.6 773,110 - -1.0 773,172 - -2.7 773,212 + -0.9 773,213 - +0.1 773,297 + HMPREF1078_RS03265 0.27 +1.9 773,324 + HMPREF1078_RS03265 0.32 +0.7 773,325 - HMPREF1078_RS03265 0.32 +0.9 773,325 - HMPREF1078_RS03265 0.32 +0.1 773,364 + HMPREF1078_RS03265 0.41 -0.2 773,364 + HMPREF1078_RS03265 0.41 -1.0 773,374 + HMPREF1078_RS03265 0.43 -1.4 773,390 + HMPREF1078_RS03265 0.46 -0.9 773,390 + HMPREF1078_RS03265 0.46 -1.7 773,390 + HMPREF1078_RS03265 0.46 +2.4 773,472 + HMPREF1078_RS03265 0.64 +2.1 773,488 + HMPREF1078_RS03265 0.67 -1.2 773,488 + HMPREF1078_RS03265 0.67 +2.1 773,488 + HMPREF1078_RS03265 0.67 -2.6 773,489 - HMPREF1078_RS03265 0.67 -0.9 773,489 - HMPREF1078_RS03265 0.67 +0.6 773,489 - HMPREF1078_RS03265 0.67 +0.1 773,492 + HMPREF1078_RS03265 0.68 -0.9 773,493 - HMPREF1078_RS03265 0.68 -1.0 773,517 + HMPREF1078_RS03265 0.73 -1.0 773,518 - HMPREF1078_RS03265 0.73 -1.3 773,521 - HMPREF1078_RS03265 0.74 -0.2 773,529 - HMPREF1078_RS03265 0.76 -2.1 773,532 + HMPREF1078_RS03265 0.76 -1.6 773,549 + HMPREF1078_RS03265 0.80 -0.7 773,555 + HMPREF1078_RS03265 0.81 -2.0 773,556 - HMPREF1078_RS03265 0.82 +2.1 773,633 - -1.4 773,673 + +2.1 773,694 - +0.1 773,695 + -3.3 773,695 + +2.1 773,696 - +0.4 773,696 - +1.1 773,696 - +1.1 773,696 - -0.7 773,727 - -1.3 773,778 - -1.3 773,778 - +0.1 773,782 + -2.5 773,782 + +1.1 773,782 + -0.7 773,783 - -1.1 773,783 - +0.1 773,783 - +0.7 773,783 - -1.2 773,783 - -0.7 773,835 + HMPREF1078_RS03270 0.12 -1.2 773,842 + HMPREF1078_RS03270 0.12 -0.6 773,914 + HMPREF1078_RS03270 0.18 +1.1 774,083 - HMPREF1078_RS03270 0.30 -0.4 774,085 - HMPREF1078_RS03270 0.30 -1.9 774,085 - HMPREF1078_RS03270 0.30 -1.7 774,085 - HMPREF1078_RS03270 0.30 -1.3 774,117 + HMPREF1078_RS03270 0.33 -0.9 774,118 - HMPREF1078_RS03270 0.33 -0.4 774,136 - HMPREF1078_RS03270 0.34 +0.6 774,136 - HMPREF1078_RS03270 0.34 -0.2 774,298 + HMPREF1078_RS03270 0.46 +2.1 774,364 - HMPREF1078_RS03270 0.51 +0.6 774,403 + HMPREF1078_RS03270 0.54 -1.3 774,403 + HMPREF1078_RS03270 0.54 -1.3 774,404 - HMPREF1078_RS03270 0.54 +0.9 774,427 + HMPREF1078_RS03270 0.56 +1.1 774,428 - HMPREF1078_RS03270 0.56 +0.6 774,438 + HMPREF1078_RS03270 0.56 +0.7 774,439 - HMPREF1078_RS03270 0.56 +0.6 774,466 + HMPREF1078_RS03270 0.58 -1.3 774,466 + HMPREF1078_RS03270 0.58 -0.9 774,467 - HMPREF1078_RS03270 0.59 -1.9 774,469 + HMPREF1078_RS03270 0.59 -1.3 774,469 + HMPREF1078_RS03270 0.59 -1.2 774,470 - HMPREF1078_RS03270 0.59 -1.7 774,470 - HMPREF1078_RS03270 0.59 +0.3 774,557 - HMPREF1078_RS03270 0.65 -4.3 774,557 - HMPREF1078_RS03270 0.65 +0.1 774,622 + HMPREF1078_RS03270 0.70 -0.4
Or see this region's nucleotide sequence