Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02405 and HMPREF1078_RS02410 are separated by 7 nucleotides HMPREF1078_RS02410 and HMPREF1078_RS18325 overlap by 4 nucleotides HMPREF1078_RS18325 and HMPREF1078_RS02415 are separated by 126 nucleotides
HMPREF1078_RS02405: HMPREF1078_RS02405 - ABC transporter substrate-binding protein, at 590,738 to 591,652
_RS02405
HMPREF1078_RS02410: HMPREF1078_RS02410 - ATP-binding cassette domain-containing protein, at 591,660 to 593,042
_RS02410
HMPREF1078_RS18325: HMPREF1078_RS18325 - HAMP domain-containing sensor histidine kinase, at 593,039 to 593,209
_RS18325
HMPREF1078_RS02415: HMPREF1078_RS02415 - Tex family protein, at 593,336 to 595,477
_RS02415
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 590.732 kb on + strand at 590.737 kb on + strand at 590.737 kb on + strand at 590.738 kb on - strand at 590.771 kb on - strand at 590.817 kb on + strand at 590.817 kb on + strand at 590.818 kb on - strand at 590.818 kb on - strand at 590.818 kb on - strand at 590.818 kb on - strand at 590.818 kb on - strand at 590.941 kb on + strand, within HMPREF1078_RS02405 at 590.941 kb on + strand, within HMPREF1078_RS02405 at 590.942 kb on - strand, within HMPREF1078_RS02405 at 590.949 kb on + strand, within HMPREF1078_RS02405 at 590.967 kb on + strand, within HMPREF1078_RS02405 at 590.968 kb on - strand, within HMPREF1078_RS02405 at 590.968 kb on - strand, within HMPREF1078_RS02405 at 590.968 kb on - strand, within HMPREF1078_RS02405 at 591.003 kb on - strand, within HMPREF1078_RS02405 at 591.004 kb on + strand, within HMPREF1078_RS02405 at 591.050 kb on - strand, within HMPREF1078_RS02405 at 591.057 kb on - strand, within HMPREF1078_RS02405 at 591.057 kb on - strand, within HMPREF1078_RS02405 at 591.064 kb on - strand, within HMPREF1078_RS02405 at 591.082 kb on + strand, within HMPREF1078_RS02405 at 591.082 kb on + strand, within HMPREF1078_RS02405 at 591.082 kb on + strand, within HMPREF1078_RS02405 at 591.083 kb on - strand, within HMPREF1078_RS02405 at 591.108 kb on + strand, within HMPREF1078_RS02405 at 591.146 kb on - strand, within HMPREF1078_RS02405 at 591.156 kb on - strand, within HMPREF1078_RS02405 at 591.170 kb on - strand, within HMPREF1078_RS02405 at 591.179 kb on + strand, within HMPREF1078_RS02405 at 591.180 kb on - strand, within HMPREF1078_RS02405 at 591.309 kb on + strand, within HMPREF1078_RS02405 at 591.321 kb on + strand, within HMPREF1078_RS02405 at 591.366 kb on + strand, within HMPREF1078_RS02405 at 591.366 kb on + strand, within HMPREF1078_RS02405 at 591.367 kb on - strand, within HMPREF1078_RS02405 at 591.371 kb on + strand, within HMPREF1078_RS02405 at 591.372 kb on - strand, within HMPREF1078_RS02405 at 591.372 kb on - strand, within HMPREF1078_RS02405 at 591.372 kb on - strand, within HMPREF1078_RS02405 at 591.394 kb on + strand, within HMPREF1078_RS02405 at 591.394 kb on + strand, within HMPREF1078_RS02405 at 591.441 kb on + strand, within HMPREF1078_RS02405 at 591.460 kb on + strand, within HMPREF1078_RS02405 at 591.460 kb on + strand, within HMPREF1078_RS02405 at 591.466 kb on + strand, within HMPREF1078_RS02405 at 591.467 kb on - strand, within HMPREF1078_RS02405 at 591.529 kb on + strand, within HMPREF1078_RS02405 at 591.541 kb on + strand, within HMPREF1078_RS02405 at 591.569 kb on - strand at 591.571 kb on - strand at 591.599 kb on + strand at 591.599 kb on + strand at 591.600 kb on - strand at 591.600 kb on - strand at 591.703 kb on + strand at 591.703 kb on + strand at 591.704 kb on - strand at 591.718 kb on + strand at 591.761 kb on - strand at 591.770 kb on - strand at 591.774 kb on - strand at 591.811 kb on - strand, within HMPREF1078_RS02410 at 591.857 kb on + strand, within HMPREF1078_RS02410 at 591.857 kb on + strand, within HMPREF1078_RS02410 at 591.858 kb on - strand, within HMPREF1078_RS02410 at 591.948 kb on - strand, within HMPREF1078_RS02410 at 591.972 kb on - strand, within HMPREF1078_RS02410 at 592.008 kb on - strand, within HMPREF1078_RS02410 at 592.073 kb on - strand, within HMPREF1078_RS02410 at 592.174 kb on + strand, within HMPREF1078_RS02410 at 592.174 kb on + strand, within HMPREF1078_RS02410 at 592.174 kb on + strand, within HMPREF1078_RS02410 at 592.175 kb on - strand, within HMPREF1078_RS02410 at 592.175 kb on - strand, within HMPREF1078_RS02410 at 592.176 kb on + strand, within HMPREF1078_RS02410 at 592.217 kb on + strand, within HMPREF1078_RS02410 at 592.218 kb on - strand, within HMPREF1078_RS02410 at 592.289 kb on + strand, within HMPREF1078_RS02410 at 592.324 kb on + strand, within HMPREF1078_RS02410 at 592.324 kb on + strand, within HMPREF1078_RS02410 at 592.390 kb on + strand, within HMPREF1078_RS02410 at 592.390 kb on + strand, within HMPREF1078_RS02410 at 592.390 kb on + strand, within HMPREF1078_RS02410 at 592.390 kb on + strand, within HMPREF1078_RS02410 at 592.391 kb on - strand, within HMPREF1078_RS02410 at 592.395 kb on + strand, within HMPREF1078_RS02410 at 592.396 kb on - strand, within HMPREF1078_RS02410 at 592.444 kb on + strand, within HMPREF1078_RS02410 at 592.458 kb on - strand, within HMPREF1078_RS02410 at 592.465 kb on - strand, within HMPREF1078_RS02410 at 592.505 kb on + strand, within HMPREF1078_RS02410 at 592.505 kb on + strand, within HMPREF1078_RS02410 at 592.525 kb on + strand, within HMPREF1078_RS02410 at 592.525 kb on + strand, within HMPREF1078_RS02410 at 592.525 kb on + strand, within HMPREF1078_RS02410 at 592.526 kb on - strand, within HMPREF1078_RS02410 at 592.526 kb on - strand, within HMPREF1078_RS02410 at 592.526 kb on - strand, within HMPREF1078_RS02410 at 592.526 kb on - strand, within HMPREF1078_RS02410 at 592.534 kb on + strand, within HMPREF1078_RS02410 at 592.579 kb on + strand, within HMPREF1078_RS02410 at 592.626 kb on - strand, within HMPREF1078_RS02410 at 592.636 kb on + strand, within HMPREF1078_RS02410 at 592.637 kb on - strand, within HMPREF1078_RS02410 at 592.637 kb on - strand, within HMPREF1078_RS02410 at 592.642 kb on - strand, within HMPREF1078_RS02410 at 592.642 kb on - strand, within HMPREF1078_RS02410 at 592.645 kb on + strand, within HMPREF1078_RS02410 at 592.646 kb on - strand, within HMPREF1078_RS02410 at 592.699 kb on + strand, within HMPREF1078_RS02410 at 592.834 kb on + strand, within HMPREF1078_RS02410 at 592.851 kb on + strand, within HMPREF1078_RS02410 at 592.851 kb on + strand, within HMPREF1078_RS02410 at 592.852 kb on - strand, within HMPREF1078_RS02410 at 592.907 kb on - strand at 592.929 kb on - strand at 593.071 kb on + strand, within HMPREF1078_RS18325 at 593.185 kb on + strand, within HMPREF1078_RS18325 at 593.185 kb on + strand, within HMPREF1078_RS18325 at 593.286 kb on + strand at 593.301 kb on + strand at 593.335 kb on + strand at 593.340 kb on + strand at 593.548 kb on + strand at 593.549 kb on - strand at 593.553 kb on + strand, within HMPREF1078_RS02415 at 593.553 kb on + strand, within HMPREF1078_RS02415 at 593.554 kb on - strand, within HMPREF1078_RS02415 at 593.562 kb on + strand, within HMPREF1078_RS02415 at 593.562 kb on + strand, within HMPREF1078_RS02415 at 593.620 kb on + strand, within HMPREF1078_RS02415 at 593.620 kb on + strand, within HMPREF1078_RS02415 at 593.631 kb on + strand, within HMPREF1078_RS02415 at 593.643 kb on - strand, within HMPREF1078_RS02415 at 593.652 kb on - strand, within HMPREF1078_RS02415 at 593.652 kb on - strand, within HMPREF1078_RS02415 at 593.652 kb on - strand, within HMPREF1078_RS02415 at 593.936 kb on - strand, within HMPREF1078_RS02415 at 593.948 kb on + strand, within HMPREF1078_RS02415 at 593.980 kb on - strand, within HMPREF1078_RS02415 at 594.026 kb on - strand, within HMPREF1078_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 590,732 + +0.6 590,737 + +2.2 590,737 + +2.7 590,738 - +0.6 590,771 - -1.4 590,817 + +0.1 590,817 + -1.0 590,818 - +0.2 590,818 - +0.2 590,818 - +0.0 590,818 - +0.6 590,818 - +1.2 590,941 + HMPREF1078_RS02405 0.22 +1.9 590,941 + HMPREF1078_RS02405 0.22 -1.5 590,942 - HMPREF1078_RS02405 0.22 -1.1 590,949 + HMPREF1078_RS02405 0.23 -1.6 590,967 + HMPREF1078_RS02405 0.25 -2.9 590,968 - HMPREF1078_RS02405 0.25 -1.6 590,968 - HMPREF1078_RS02405 0.25 -0.8 590,968 - HMPREF1078_RS02405 0.25 -1.5 591,003 - HMPREF1078_RS02405 0.29 -1.1 591,004 + HMPREF1078_RS02405 0.29 +0.6 591,050 - HMPREF1078_RS02405 0.34 +3.2 591,057 - HMPREF1078_RS02405 0.35 -0.0 591,057 - HMPREF1078_RS02405 0.35 +1.2 591,064 - HMPREF1078_RS02405 0.36 +0.6 591,082 + HMPREF1078_RS02405 0.38 -1.2 591,082 + HMPREF1078_RS02405 0.38 -2.0 591,082 + HMPREF1078_RS02405 0.38 -1.0 591,083 - HMPREF1078_RS02405 0.38 +0.6 591,108 + HMPREF1078_RS02405 0.40 -0.6 591,146 - HMPREF1078_RS02405 0.45 +0.2 591,156 - HMPREF1078_RS02405 0.46 +2.2 591,170 - HMPREF1078_RS02405 0.47 -0.3 591,179 + HMPREF1078_RS02405 0.48 -2.7 591,180 - HMPREF1078_RS02405 0.48 -2.0 591,309 + HMPREF1078_RS02405 0.62 +0.2 591,321 + HMPREF1078_RS02405 0.64 -1.0 591,366 + HMPREF1078_RS02405 0.69 +1.4 591,366 + HMPREF1078_RS02405 0.69 +0.3 591,367 - HMPREF1078_RS02405 0.69 -0.6 591,371 + HMPREF1078_RS02405 0.69 +1.2 591,372 - HMPREF1078_RS02405 0.69 +0.5 591,372 - HMPREF1078_RS02405 0.69 -0.2 591,372 - HMPREF1078_RS02405 0.69 -0.6 591,394 + HMPREF1078_RS02405 0.72 +0.6 591,394 + HMPREF1078_RS02405 0.72 +0.1 591,441 + HMPREF1078_RS02405 0.77 +0.9 591,460 + HMPREF1078_RS02405 0.79 -0.8 591,460 + HMPREF1078_RS02405 0.79 +1.0 591,466 + HMPREF1078_RS02405 0.80 -0.7 591,467 - HMPREF1078_RS02405 0.80 +1.2 591,529 + HMPREF1078_RS02405 0.86 -0.0 591,541 + HMPREF1078_RS02405 0.88 +0.2 591,569 - +1.2 591,571 - +0.2 591,599 + +1.6 591,599 + -0.8 591,600 - -1.3 591,600 - -2.9 591,703 + -1.8 591,703 + +0.9 591,704 - +1.2 591,718 + +0.2 591,761 - -2.0 591,770 - +2.0 591,774 - -0.6 591,811 - HMPREF1078_RS02410 0.11 -0.2 591,857 + HMPREF1078_RS02410 0.14 -0.0 591,857 + HMPREF1078_RS02410 0.14 -0.0 591,858 - HMPREF1078_RS02410 0.14 +1.4 591,948 - HMPREF1078_RS02410 0.21 -3.5 591,972 - HMPREF1078_RS02410 0.23 +1.2 592,008 - HMPREF1078_RS02410 0.25 +0.6 592,073 - HMPREF1078_RS02410 0.30 +1.2 592,174 + HMPREF1078_RS02410 0.37 -1.9 592,174 + HMPREF1078_RS02410 0.37 -1.9 592,174 + HMPREF1078_RS02410 0.37 -0.8 592,175 - HMPREF1078_RS02410 0.37 +0.9 592,175 - HMPREF1078_RS02410 0.37 +0.3 592,176 + HMPREF1078_RS02410 0.37 -1.1 592,217 + HMPREF1078_RS02410 0.40 -1.6 592,218 - HMPREF1078_RS02410 0.40 +0.1 592,289 + HMPREF1078_RS02410 0.45 +1.6 592,324 + HMPREF1078_RS02410 0.48 -1.8 592,324 + HMPREF1078_RS02410 0.48 +0.4 592,390 + HMPREF1078_RS02410 0.53 +1.2 592,390 + HMPREF1078_RS02410 0.53 +0.2 592,390 + HMPREF1078_RS02410 0.53 -1.0 592,390 + HMPREF1078_RS02410 0.53 -2.2 592,391 - HMPREF1078_RS02410 0.53 +0.2 592,395 + HMPREF1078_RS02410 0.53 +1.2 592,396 - HMPREF1078_RS02410 0.53 -0.3 592,444 + HMPREF1078_RS02410 0.57 -2.0 592,458 - HMPREF1078_RS02410 0.58 +1.2 592,465 - HMPREF1078_RS02410 0.58 -0.8 592,505 + HMPREF1078_RS02410 0.61 -0.3 592,505 + HMPREF1078_RS02410 0.61 +0.5 592,525 + HMPREF1078_RS02410 0.63 -2.0 592,525 + HMPREF1078_RS02410 0.63 -0.2 592,525 + HMPREF1078_RS02410 0.63 -0.4 592,526 - HMPREF1078_RS02410 0.63 -1.0 592,526 - HMPREF1078_RS02410 0.63 -0.2 592,526 - HMPREF1078_RS02410 0.63 -0.6 592,526 - HMPREF1078_RS02410 0.63 -0.3 592,534 + HMPREF1078_RS02410 0.63 -1.6 592,579 + HMPREF1078_RS02410 0.66 -0.9 592,626 - HMPREF1078_RS02410 0.70 -0.1 592,636 + HMPREF1078_RS02410 0.71 -0.6 592,637 - HMPREF1078_RS02410 0.71 -1.7 592,637 - HMPREF1078_RS02410 0.71 +2.2 592,642 - HMPREF1078_RS02410 0.71 +0.6 592,642 - HMPREF1078_RS02410 0.71 -1.6 592,645 + HMPREF1078_RS02410 0.71 +0.2 592,646 - HMPREF1078_RS02410 0.71 -0.4 592,699 + HMPREF1078_RS02410 0.75 +1.6 592,834 + HMPREF1078_RS02410 0.85 -1.8 592,851 + HMPREF1078_RS02410 0.86 -1.3 592,851 + HMPREF1078_RS02410 0.86 +0.2 592,852 - HMPREF1078_RS02410 0.86 -0.4 592,907 - +0.2 592,929 - +0.2 593,071 + HMPREF1078_RS18325 0.19 -1.0 593,185 + HMPREF1078_RS18325 0.85 +1.7 593,185 + HMPREF1078_RS18325 0.85 +0.6 593,286 + +0.6 593,301 + +0.6 593,335 + -1.7 593,340 + -1.6 593,548 + +2.9 593,549 - -0.4 593,553 + HMPREF1078_RS02415 0.10 +2.2 593,553 + HMPREF1078_RS02415 0.10 -1.6 593,554 - HMPREF1078_RS02415 0.10 +1.9 593,562 + HMPREF1078_RS02415 0.11 +2.6 593,562 + HMPREF1078_RS02415 0.11 +1.2 593,620 + HMPREF1078_RS02415 0.13 +2.2 593,620 + HMPREF1078_RS02415 0.13 +0.6 593,631 + HMPREF1078_RS02415 0.14 +0.7 593,643 - HMPREF1078_RS02415 0.14 -0.8 593,652 - HMPREF1078_RS02415 0.15 -0.6 593,652 - HMPREF1078_RS02415 0.15 -0.2 593,652 - HMPREF1078_RS02415 0.15 -0.7 593,936 - HMPREF1078_RS02415 0.28 +1.2 593,948 + HMPREF1078_RS02415 0.29 +0.2 593,980 - HMPREF1078_RS02415 0.30 +2.2 594,026 - HMPREF1078_RS02415 0.32 +2.5
Or see this region's nucleotide sequence