Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01355

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS01350 and HMPREF1078_RS01355 are separated by 198 nucleotidesHMPREF1078_RS01355 and HMPREF1078_RS01360 are separated by 3 nucleotides HMPREF1078_RS01350: HMPREF1078_RS01350 - aspartate carbamoyltransferase, at 347,126 to 348,046 _RS01350 HMPREF1078_RS01355: HMPREF1078_RS01355 - efflux transporter outer membrane subunit, at 348,245 to 349,606 _RS01355 HMPREF1078_RS01360: HMPREF1078_RS01360 - efflux RND transporter permease subunit, at 349,610 to 352,804 _RS01360 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 348.055 kb on - strandat 348.055 kb on - strandat 348.055 kb on - strandat 348.057 kb on - strandat 348.067 kb on - strandat 348.095 kb on - strandat 348.095 kb on - strandat 348.190 kb on - strandat 348.193 kb on + strandat 348.225 kb on + strandat 348.232 kb on - strandat 348.246 kb on + strandat 348.247 kb on - strandat 348.247 kb on - strandat 348.263 kb on + strandat 348.273 kb on + strandat 348.274 kb on - strandat 348.294 kb on - strandat 348.593 kb on - strand, within HMPREF1078_RS01355at 348.658 kb on + strand, within HMPREF1078_RS01355at 348.659 kb on - strand, within HMPREF1078_RS01355at 348.698 kb on + strand, within HMPREF1078_RS01355at 348.699 kb on - strand, within HMPREF1078_RS01355at 348.711 kb on + strand, within HMPREF1078_RS01355at 348.712 kb on - strand, within HMPREF1078_RS01355at 348.712 kb on - strand, within HMPREF1078_RS01355at 348.741 kb on + strand, within HMPREF1078_RS01355at 348.776 kb on + strand, within HMPREF1078_RS01355at 348.777 kb on - strand, within HMPREF1078_RS01355at 348.822 kb on - strand, within HMPREF1078_RS01355at 348.822 kb on - strand, within HMPREF1078_RS01355at 348.890 kb on + strand, within HMPREF1078_RS01355at 348.890 kb on + strand, within HMPREF1078_RS01355at 348.901 kb on + strand, within HMPREF1078_RS01355at 348.957 kb on + strand, within HMPREF1078_RS01355at 348.958 kb on - strand, within HMPREF1078_RS01355at 348.960 kb on + strand, within HMPREF1078_RS01355at 348.999 kb on - strand, within HMPREF1078_RS01355at 349.018 kb on + strand, within HMPREF1078_RS01355at 349.073 kb on + strand, within HMPREF1078_RS01355at 349.074 kb on - strand, within HMPREF1078_RS01355at 349.085 kb on + strand, within HMPREF1078_RS01355at 349.085 kb on - strand, within HMPREF1078_RS01355at 349.086 kb on - strand, within HMPREF1078_RS01355at 349.086 kb on - strand, within HMPREF1078_RS01355at 349.086 kb on - strand, within HMPREF1078_RS01355at 349.099 kb on + strand, within HMPREF1078_RS01355at 349.100 kb on - strand, within HMPREF1078_RS01355at 349.100 kb on - strand, within HMPREF1078_RS01355at 349.100 kb on - strand, within HMPREF1078_RS01355at 349.100 kb on - strand, within HMPREF1078_RS01355at 349.100 kb on - strand, within HMPREF1078_RS01355at 349.100 kb on - strand, within HMPREF1078_RS01355at 349.102 kb on - strand, within HMPREF1078_RS01355at 349.102 kb on - strand, within HMPREF1078_RS01355at 349.105 kb on - strand, within HMPREF1078_RS01355at 349.105 kb on - strand, within HMPREF1078_RS01355at 349.105 kb on - strand, within HMPREF1078_RS01355at 349.105 kb on - strand, within HMPREF1078_RS01355at 349.106 kb on + strand, within HMPREF1078_RS01355at 349.106 kb on + strand, within HMPREF1078_RS01355at 349.106 kb on + strand, within HMPREF1078_RS01355at 349.106 kb on + strand, within HMPREF1078_RS01355at 349.106 kb on + strand, within HMPREF1078_RS01355at 349.107 kb on - strand, within HMPREF1078_RS01355at 349.107 kb on - strand, within HMPREF1078_RS01355at 349.107 kb on - strand, within HMPREF1078_RS01355at 349.107 kb on - strand, within HMPREF1078_RS01355at 349.107 kb on - strand, within HMPREF1078_RS01355at 349.152 kb on + strand, within HMPREF1078_RS01355at 349.170 kb on + strand, within HMPREF1078_RS01355at 349.170 kb on + strand, within HMPREF1078_RS01355at 349.170 kb on + strand, within HMPREF1078_RS01355at 349.170 kb on + strand, within HMPREF1078_RS01355at 349.171 kb on - strand, within HMPREF1078_RS01355at 349.251 kb on + strand, within HMPREF1078_RS01355at 349.252 kb on - strand, within HMPREF1078_RS01355at 349.404 kb on - strand, within HMPREF1078_RS01355at 349.480 kb on + strandat 349.480 kb on + strandat 349.481 kb on - strandat 349.539 kb on + strandat 349.549 kb on - strandat 349.550 kb on + strandat 349.551 kb on - strandat 349.551 kb on - strandat 349.587 kb on - strandat 349.590 kb on - strandat 349.595 kb on + strandat 349.606 kb on + strandat 349.606 kb on + strandat 349.606 kb on + strandat 349.607 kb on - strandat 349.612 kb on - strandat 349.615 kb on + strandat 349.723 kb on - strandat 349.737 kb on + strandat 349.738 kb on - strandat 349.743 kb on - strandat 349.859 kb on - strandat 349.873 kb on + strandat 349.874 kb on - strandat 349.878 kb on - strandat 349.878 kb on - strandat 349.898 kb on + strandat 349.921 kb on - strandat 349.975 kb on + strand, within HMPREF1078_RS01360at 350.018 kb on + strand, within HMPREF1078_RS01360at 350.157 kb on + strand, within HMPREF1078_RS01360at 350.161 kb on + strand, within HMPREF1078_RS01360at 350.161 kb on + strand, within HMPREF1078_RS01360at 350.161 kb on + strand, within HMPREF1078_RS01360at 350.161 kb on + strand, within HMPREF1078_RS01360at 350.170 kb on + strand, within HMPREF1078_RS01360at 350.170 kb on + strand, within HMPREF1078_RS01360at 350.181 kb on + strand, within HMPREF1078_RS01360at 350.182 kb on - strand, within HMPREF1078_RS01360at 350.185 kb on + strand, within HMPREF1078_RS01360at 350.186 kb on - strand, within HMPREF1078_RS01360at 350.231 kb on - strand, within HMPREF1078_RS01360at 350.245 kb on - strand, within HMPREF1078_RS01360at 350.245 kb on - strand, within HMPREF1078_RS01360at 350.345 kb on - strand, within HMPREF1078_RS01360at 350.350 kb on + strand, within HMPREF1078_RS01360at 350.351 kb on - strand, within HMPREF1078_RS01360at 350.372 kb on + strand, within HMPREF1078_RS01360at 350.450 kb on - strand, within HMPREF1078_RS01360at 350.478 kb on + strand, within HMPREF1078_RS01360at 350.508 kb on + strand, within HMPREF1078_RS01360at 350.510 kb on + strand, within HMPREF1078_RS01360at 350.541 kb on + strand, within HMPREF1078_RS01360at 350.541 kb on + strand, within HMPREF1078_RS01360at 350.541 kb on + strand, within HMPREF1078_RS01360at 350.541 kb on + strand, within HMPREF1078_RS01360at 350.541 kb on + strand, within HMPREF1078_RS01360at 350.541 kb on + strand, within HMPREF1078_RS01360at 350.542 kb on - strand, within HMPREF1078_RS01360at 350.556 kb on + strand, within HMPREF1078_RS01360at 350.556 kb on + strand, within HMPREF1078_RS01360at 350.556 kb on + strand, within HMPREF1078_RS01360at 350.557 kb on - strand, within HMPREF1078_RS01360at 350.557 kb on - strand, within HMPREF1078_RS01360at 350.557 kb on - strand, within HMPREF1078_RS01360at 350.557 kb on - strand, within HMPREF1078_RS01360at 350.557 kb on - strand, within HMPREF1078_RS01360at 350.560 kb on + strand, within HMPREF1078_RS01360at 350.561 kb on - strand, within HMPREF1078_RS01360at 350.568 kb on - strand, within HMPREF1078_RS01360at 350.568 kb on - strand, within HMPREF1078_RS01360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
remove
348,055 - -2.3
348,055 - +0.3
348,055 - -0.7
348,057 - -3.2
348,067 - -0.4
348,095 - -1.7
348,095 - -0.2
348,190 - -0.1
348,193 + -1.2
348,225 + -1.2
348,232 - -0.2
348,246 + -0.1
348,247 - +0.7
348,247 - -1.9
348,263 + -0.1
348,273 + +1.3
348,274 - -0.1
348,294 - +0.7
348,593 - HMPREF1078_RS01355 0.26 -1.7
348,658 + HMPREF1078_RS01355 0.30 -0.2
348,659 - HMPREF1078_RS01355 0.30 -0.6
348,698 + HMPREF1078_RS01355 0.33 +0.5
348,699 - HMPREF1078_RS01355 0.33 -0.1
348,711 + HMPREF1078_RS01355 0.34 -0.1
348,712 - HMPREF1078_RS01355 0.34 +0.9
348,712 - HMPREF1078_RS01355 0.34 -1.8
348,741 + HMPREF1078_RS01355 0.36 +0.3
348,776 + HMPREF1078_RS01355 0.39 +1.4
348,777 - HMPREF1078_RS01355 0.39 -2.3
348,822 - HMPREF1078_RS01355 0.42 -0.9
348,822 - HMPREF1078_RS01355 0.42 +1.8
348,890 + HMPREF1078_RS01355 0.47 +1.3
348,890 + HMPREF1078_RS01355 0.47 -0.9
348,901 + HMPREF1078_RS01355 0.48 -0.6
348,957 + HMPREF1078_RS01355 0.52 -2.0
348,958 - HMPREF1078_RS01355 0.52 -2.4
348,960 + HMPREF1078_RS01355 0.52 -0.2
348,999 - HMPREF1078_RS01355 0.55 +2.8
349,018 + HMPREF1078_RS01355 0.57 -0.6
349,073 + HMPREF1078_RS01355 0.61 +0.5
349,074 - HMPREF1078_RS01355 0.61 -0.1
349,085 + HMPREF1078_RS01355 0.62 -1.1
349,085 - HMPREF1078_RS01355 0.62 -0.9
349,086 - HMPREF1078_RS01355 0.62 +0.8
349,086 - HMPREF1078_RS01355 0.62 +1.8
349,086 - HMPREF1078_RS01355 0.62 -0.3
349,099 + HMPREF1078_RS01355 0.63 -0.1
349,100 - HMPREF1078_RS01355 0.63 -0.3
349,100 - HMPREF1078_RS01355 0.63 -1.6
349,100 - HMPREF1078_RS01355 0.63 +1.7
349,100 - HMPREF1078_RS01355 0.63 +0.4
349,100 - HMPREF1078_RS01355 0.63 -0.4
349,100 - HMPREF1078_RS01355 0.63 -1.4
349,102 - HMPREF1078_RS01355 0.63 +1.3
349,102 - HMPREF1078_RS01355 0.63 -1.3
349,105 - HMPREF1078_RS01355 0.63 -1.2
349,105 - HMPREF1078_RS01355 0.63 +1.0
349,105 - HMPREF1078_RS01355 0.63 +0.3
349,105 - HMPREF1078_RS01355 0.63 +1.5
349,106 + HMPREF1078_RS01355 0.63 -0.6
349,106 + HMPREF1078_RS01355 0.63 -1.9
349,106 + HMPREF1078_RS01355 0.63 -0.1
349,106 + HMPREF1078_RS01355 0.63 +2.3
349,106 + HMPREF1078_RS01355 0.63 +0.3
349,107 - HMPREF1078_RS01355 0.63 -1.3
349,107 - HMPREF1078_RS01355 0.63 +2.3
349,107 - HMPREF1078_RS01355 0.63 -2.9
349,107 - HMPREF1078_RS01355 0.63 +0.7
349,107 - HMPREF1078_RS01355 0.63 -1.6
349,152 + HMPREF1078_RS01355 0.67 -0.3
349,170 + HMPREF1078_RS01355 0.68 -0.6
349,170 + HMPREF1078_RS01355 0.68 +0.6
349,170 + HMPREF1078_RS01355 0.68 +0.3
349,170 + HMPREF1078_RS01355 0.68 +1.3
349,171 - HMPREF1078_RS01355 0.68 -1.8
349,251 + HMPREF1078_RS01355 0.74 -1.3
349,252 - HMPREF1078_RS01355 0.74 -1.7
349,404 - HMPREF1078_RS01355 0.85 -1.4
349,480 + -0.6
349,480 + -0.6
349,481 - -1.3
349,539 + -0.6
349,549 - +0.0
349,550 + -1.7
349,551 - +1.8
349,551 - +0.3
349,587 - -3.2
349,590 - -0.7
349,595 + -0.9
349,606 + -1.9
349,606 + +0.4
349,606 + -1.1
349,607 - -0.7
349,612 - -0.3
349,615 + -0.7
349,723 - +1.8
349,737 + -0.2
349,738 - -0.9
349,743 - +1.3
349,859 - -1.4
349,873 + -0.3
349,874 - -1.4
349,878 - -1.8
349,878 - -0.2
349,898 + -0.7
349,921 - +0.4
349,975 + HMPREF1078_RS01360 0.11 -0.1
350,018 + HMPREF1078_RS01360 0.13 -2.3
350,157 + HMPREF1078_RS01360 0.17 +1.1
350,161 + HMPREF1078_RS01360 0.17 +2.4
350,161 + HMPREF1078_RS01360 0.17 +1.0
350,161 + HMPREF1078_RS01360 0.17 -0.7
350,161 + HMPREF1078_RS01360 0.17 +1.8
350,170 + HMPREF1078_RS01360 0.18 -1.3
350,170 + HMPREF1078_RS01360 0.18 -0.4
350,181 + HMPREF1078_RS01360 0.18 -1.5
350,182 - HMPREF1078_RS01360 0.18 -1.7
350,185 + HMPREF1078_RS01360 0.18 -0.3
350,186 - HMPREF1078_RS01360 0.18 -0.9
350,231 - HMPREF1078_RS01360 0.19 -1.4
350,245 - HMPREF1078_RS01360 0.20 -0.3
350,245 - HMPREF1078_RS01360 0.20 +1.6
350,345 - HMPREF1078_RS01360 0.23 -0.3
350,350 + HMPREF1078_RS01360 0.23 -0.4
350,351 - HMPREF1078_RS01360 0.23 -0.4
350,372 + HMPREF1078_RS01360 0.24 -2.5
350,450 - HMPREF1078_RS01360 0.26 -0.7
350,478 + HMPREF1078_RS01360 0.27 +0.4
350,508 + HMPREF1078_RS01360 0.28 +0.7
350,510 + HMPREF1078_RS01360 0.28 +0.7
350,541 + HMPREF1078_RS01360 0.29 -0.6
350,541 + HMPREF1078_RS01360 0.29 -0.1
350,541 + HMPREF1078_RS01360 0.29 -0.3
350,541 + HMPREF1078_RS01360 0.29 -1.3
350,541 + HMPREF1078_RS01360 0.29 -1.2
350,541 + HMPREF1078_RS01360 0.29 -0.9
350,542 - HMPREF1078_RS01360 0.29 -1.3
350,556 + HMPREF1078_RS01360 0.30 -0.1
350,556 + HMPREF1078_RS01360 0.30 +2.7
350,556 + HMPREF1078_RS01360 0.30 +0.5
350,557 - HMPREF1078_RS01360 0.30 +0.6
350,557 - HMPREF1078_RS01360 0.30 -1.7
350,557 - HMPREF1078_RS01360 0.30 -0.1
350,557 - HMPREF1078_RS01360 0.30 +1.3
350,557 - HMPREF1078_RS01360 0.30 +1.5
350,560 + HMPREF1078_RS01360 0.30 -0.3
350,561 - HMPREF1078_RS01360 0.30 -2.0
350,568 - HMPREF1078_RS01360 0.30 +0.4
350,568 - HMPREF1078_RS01360 0.30 +1.4

Or see this region's nucleotide sequence