Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14960

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14955 and HMPREF1078_RS14960 overlap by 4 nucleotidesHMPREF1078_RS14960 and HMPREF1078_RS14965 are separated by 85 nucleotides HMPREF1078_RS14955: HMPREF1078_RS14955 - methionine synthase, at 40,611 to 44,306 _RS14955 HMPREF1078_RS14960: HMPREF1078_RS14960 - DUF3810 domain-containing protein, at 44,303 to 45,340 _RS14960 HMPREF1078_RS14965: HMPREF1078_RS14965 - isoleucine--tRNA ligase, at 45,426 to 48,851 _RS14965 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3at 43.306 kb on + strand, within HMPREF1078_RS14955at 43.306 kb on + strand, within HMPREF1078_RS14955at 43.306 kb on + strand, within HMPREF1078_RS14955at 43.362 kb on + strand, within HMPREF1078_RS14955at 43.362 kb on + strand, within HMPREF1078_RS14955at 43.363 kb on - strand, within HMPREF1078_RS14955at 43.363 kb on - strand, within HMPREF1078_RS14955at 43.426 kb on + strand, within HMPREF1078_RS14955at 43.434 kb on + strand, within HMPREF1078_RS14955at 43.434 kb on + strand, within HMPREF1078_RS14955at 43.435 kb on - strand, within HMPREF1078_RS14955at 43.587 kb on + strand, within HMPREF1078_RS14955at 43.587 kb on + strand, within HMPREF1078_RS14955at 43.587 kb on + strand, within HMPREF1078_RS14955at 43.601 kb on + strand, within HMPREF1078_RS14955at 43.602 kb on - strand, within HMPREF1078_RS14955at 43.685 kb on + strand, within HMPREF1078_RS14955at 43.752 kb on + strand, within HMPREF1078_RS14955at 43.752 kb on + strand, within HMPREF1078_RS14955at 43.753 kb on - strand, within HMPREF1078_RS14955at 43.770 kb on + strand, within HMPREF1078_RS14955at 43.770 kb on + strand, within HMPREF1078_RS14955at 43.803 kb on + strand, within HMPREF1078_RS14955at 43.878 kb on - strand, within HMPREF1078_RS14955at 43.878 kb on - strand, within HMPREF1078_RS14955at 43.882 kb on - strand, within HMPREF1078_RS14955at 43.939 kb on - strandat 44.022 kb on + strandat 44.032 kb on + strandat 44.079 kb on + strandat 44.098 kb on + strandat 44.099 kb on - strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.141 kb on + strandat 44.142 kb on - strandat 44.142 kb on - strandat 44.142 kb on - strandat 44.175 kb on - strandat 44.238 kb on + strandat 44.239 kb on - strandat 44.282 kb on - strandat 44.309 kb on + strandat 44.309 kb on + strandat 44.313 kb on + strandat 44.313 kb on + strandat 44.314 kb on - strandat 44.387 kb on + strandat 44.387 kb on + strandat 44.388 kb on - strandat 44.388 kb on - strandat 44.400 kb on + strandat 44.400 kb on + strandat 44.400 kb on + strandat 44.400 kb on + strandat 44.400 kb on + strandat 44.401 kb on - strandat 44.402 kb on + strandat 44.409 kb on - strand, within HMPREF1078_RS14960at 44.409 kb on - strand, within HMPREF1078_RS14960at 44.410 kb on + strand, within HMPREF1078_RS14960at 44.411 kb on - strand, within HMPREF1078_RS14960at 44.411 kb on - strand, within HMPREF1078_RS14960at 44.411 kb on - strand, within HMPREF1078_RS14960at 44.411 kb on - strand, within HMPREF1078_RS14960at 44.412 kb on + strand, within HMPREF1078_RS14960at 44.443 kb on - strand, within HMPREF1078_RS14960at 44.474 kb on + strand, within HMPREF1078_RS14960at 44.474 kb on + strand, within HMPREF1078_RS14960at 44.474 kb on + strand, within HMPREF1078_RS14960at 44.474 kb on + strand, within HMPREF1078_RS14960at 44.475 kb on - strand, within HMPREF1078_RS14960at 44.479 kb on + strand, within HMPREF1078_RS14960at 44.482 kb on + strand, within HMPREF1078_RS14960at 44.501 kb on + strand, within HMPREF1078_RS14960at 44.502 kb on - strand, within HMPREF1078_RS14960at 44.511 kb on - strand, within HMPREF1078_RS14960at 44.577 kb on + strand, within HMPREF1078_RS14960at 44.577 kb on + strand, within HMPREF1078_RS14960at 44.577 kb on + strand, within HMPREF1078_RS14960at 44.579 kb on + strand, within HMPREF1078_RS14960at 44.579 kb on + strand, within HMPREF1078_RS14960at 44.579 kb on + strand, within HMPREF1078_RS14960at 44.579 kb on + strand, within HMPREF1078_RS14960at 44.579 kb on + strand, within HMPREF1078_RS14960at 44.579 kb on + strand, within HMPREF1078_RS14960at 44.580 kb on - strand, within HMPREF1078_RS14960at 44.580 kb on - strand, within HMPREF1078_RS14960at 44.688 kb on + strand, within HMPREF1078_RS14960at 44.699 kb on - strand, within HMPREF1078_RS14960at 44.699 kb on - strand, within HMPREF1078_RS14960at 44.699 kb on - strand, within HMPREF1078_RS14960at 44.743 kb on + strand, within HMPREF1078_RS14960at 44.743 kb on + strand, within HMPREF1078_RS14960at 44.778 kb on - strand, within HMPREF1078_RS14960at 44.845 kb on - strand, within HMPREF1078_RS14960at 44.884 kb on + strand, within HMPREF1078_RS14960at 44.884 kb on + strand, within HMPREF1078_RS14960at 44.976 kb on + strand, within HMPREF1078_RS14960at 44.983 kb on - strand, within HMPREF1078_RS14960at 45.080 kb on + strand, within HMPREF1078_RS14960at 45.080 kb on + strand, within HMPREF1078_RS14960at 45.099 kb on - strand, within HMPREF1078_RS14960at 45.106 kb on - strand, within HMPREF1078_RS14960at 45.167 kb on + strand, within HMPREF1078_RS14960at 45.167 kb on + strand, within HMPREF1078_RS14960at 45.230 kb on - strand, within HMPREF1078_RS14960at 45.230 kb on - strand, within HMPREF1078_RS14960at 45.285 kb on - strandat 45.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6
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43,306 + HMPREF1078_RS14955 0.73 -1.9
43,306 + HMPREF1078_RS14955 0.73 -1.6
43,306 + HMPREF1078_RS14955 0.73 -0.1
43,362 + HMPREF1078_RS14955 0.74 -1.2
43,362 + HMPREF1078_RS14955 0.74 +2.1
43,363 - HMPREF1078_RS14955 0.74 +1.3
43,363 - HMPREF1078_RS14955 0.74 +2.3
43,426 + HMPREF1078_RS14955 0.76 +1.1
43,434 + HMPREF1078_RS14955 0.76 +0.5
43,434 + HMPREF1078_RS14955 0.76 -0.9
43,435 - HMPREF1078_RS14955 0.76 -0.7
43,587 + HMPREF1078_RS14955 0.81 -0.8
43,587 + HMPREF1078_RS14955 0.81 +0.2
43,587 + HMPREF1078_RS14955 0.81 -2.1
43,601 + HMPREF1078_RS14955 0.81 -0.7
43,602 - HMPREF1078_RS14955 0.81 +1.0
43,685 + HMPREF1078_RS14955 0.83 +0.3
43,752 + HMPREF1078_RS14955 0.85 -1.8
43,752 + HMPREF1078_RS14955 0.85 -0.5
43,753 - HMPREF1078_RS14955 0.85 +0.9
43,770 + HMPREF1078_RS14955 0.85 -2.0
43,770 + HMPREF1078_RS14955 0.85 +0.9
43,803 + HMPREF1078_RS14955 0.86 +0.5
43,878 - HMPREF1078_RS14955 0.88 +0.5
43,878 - HMPREF1078_RS14955 0.88 +1.9
43,882 - HMPREF1078_RS14955 0.89 +1.1
43,939 - -0.7
44,022 + -1.0
44,032 + -0.9
44,079 + -0.4
44,098 + -2.2
44,099 - +0.5
44,102 + -0.0
44,102 + -1.6
44,102 + -0.2
44,102 + -1.9
44,141 + -1.0
44,142 - +2.1
44,142 - +1.4
44,142 - +0.5
44,175 - -1.1
44,238 + +2.1
44,239 - +0.6
44,282 - -2.3
44,309 + +0.5
44,309 + -0.2
44,313 + +0.9
44,313 + +2.1
44,314 - +0.1
44,387 + +1.5
44,387 + -0.8
44,388 - -0.1
44,388 - -0.6
44,400 + -0.2
44,400 + +0.5
44,400 + -2.4
44,400 + -0.7
44,400 + +0.7
44,401 - -0.2
44,402 + +0.1
44,409 - HMPREF1078_RS14960 0.10 +1.4
44,409 - HMPREF1078_RS14960 0.10 -0.1
44,410 + HMPREF1078_RS14960 0.10 +1.1
44,411 - HMPREF1078_RS14960 0.10 -0.6
44,411 - HMPREF1078_RS14960 0.10 +1.2
44,411 - HMPREF1078_RS14960 0.10 -1.9
44,411 - HMPREF1078_RS14960 0.10 +0.5
44,412 + HMPREF1078_RS14960 0.11 +1.6
44,443 - HMPREF1078_RS14960 0.13 -0.3
44,474 + HMPREF1078_RS14960 0.16 -0.2
44,474 + HMPREF1078_RS14960 0.16 -0.4
44,474 + HMPREF1078_RS14960 0.16 +0.9
44,474 + HMPREF1078_RS14960 0.16 +0.3
44,475 - HMPREF1078_RS14960 0.17 +2.1
44,479 + HMPREF1078_RS14960 0.17 +1.0
44,482 + HMPREF1078_RS14960 0.17 -0.4
44,501 + HMPREF1078_RS14960 0.19 +0.0
44,502 - HMPREF1078_RS14960 0.19 +2.1
44,511 - HMPREF1078_RS14960 0.20 -0.2
44,577 + HMPREF1078_RS14960 0.26 +0.1
44,577 + HMPREF1078_RS14960 0.26 +1.4
44,577 + HMPREF1078_RS14960 0.26 -0.2
44,579 + HMPREF1078_RS14960 0.27 -0.2
44,579 + HMPREF1078_RS14960 0.27 -0.2
44,579 + HMPREF1078_RS14960 0.27 -2.5
44,579 + HMPREF1078_RS14960 0.27 +1.1
44,579 + HMPREF1078_RS14960 0.27 -0.4
44,579 + HMPREF1078_RS14960 0.27 +0.4
44,580 - HMPREF1078_RS14960 0.27 +1.5
44,580 - HMPREF1078_RS14960 0.27 +0.4
44,688 + HMPREF1078_RS14960 0.37 -0.9
44,699 - HMPREF1078_RS14960 0.38 +0.6
44,699 - HMPREF1078_RS14960 0.38 +0.1
44,699 - HMPREF1078_RS14960 0.38 +0.3
44,743 + HMPREF1078_RS14960 0.42 +0.9
44,743 + HMPREF1078_RS14960 0.42 -0.9
44,778 - HMPREF1078_RS14960 0.46 +0.1
44,845 - HMPREF1078_RS14960 0.52 +0.7
44,884 + HMPREF1078_RS14960 0.56 +0.4
44,884 + HMPREF1078_RS14960 0.56 +1.5
44,976 + HMPREF1078_RS14960 0.65 +0.2
44,983 - HMPREF1078_RS14960 0.66 +1.0
45,080 + HMPREF1078_RS14960 0.75 +1.2
45,080 + HMPREF1078_RS14960 0.75 -0.4
45,099 - HMPREF1078_RS14960 0.77 +1.7
45,106 - HMPREF1078_RS14960 0.77 +0.4
45,167 + HMPREF1078_RS14960 0.83 -0.5
45,167 + HMPREF1078_RS14960 0.83 -0.5
45,230 - HMPREF1078_RS14960 0.89 -1.4
45,230 - HMPREF1078_RS14960 0.89 +3.1
45,285 - -0.5
45,303 + +0.8

Or see this region's nucleotide sequence