Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09030 and HMPREF1078_RS09035 are separated by 40 nucleotides HMPREF1078_RS09035 and HMPREF1078_RS09040 are separated by 23 nucleotides HMPREF1078_RS09040 and HMPREF1078_RS09045 are separated by 3 nucleotides
HMPREF1078_RS09030: HMPREF1078_RS09030 - TraG family conjugative transposon ATPase, at 406,419 to 408,923
_RS09030
HMPREF1078_RS09035: HMPREF1078_RS09035 - DUF3876 domain-containing protein, at 408,964 to 409,344
_RS09035
HMPREF1078_RS09040: HMPREF1078_RS09040 - DUF4141 domain-containing protein, at 409,368 to 409,997
_RS09040
HMPREF1078_RS09045: HMPREF1078_RS09045 - conjugative transposon protein TraJ, at 410,001 to 411,005
_RS09045
Position (kb) 409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 408.478 kb on - strand, within HMPREF1078_RS09030 at 408.486 kb on + strand, within HMPREF1078_RS09030 at 408.488 kb on + strand, within HMPREF1078_RS09030 at 408.488 kb on + strand, within HMPREF1078_RS09030 at 408.488 kb on + strand, within HMPREF1078_RS09030 at 408.488 kb on + strand, within HMPREF1078_RS09030 at 408.488 kb on + strand, within HMPREF1078_RS09030 at 408.492 kb on + strand, within HMPREF1078_RS09030 at 408.493 kb on - strand, within HMPREF1078_RS09030 at 408.493 kb on - strand, within HMPREF1078_RS09030 at 408.494 kb on + strand, within HMPREF1078_RS09030 at 408.554 kb on + strand, within HMPREF1078_RS09030 at 408.585 kb on - strand, within HMPREF1078_RS09030 at 408.775 kb on - strand at 408.775 kb on - strand at 408.940 kb on - strand at 409.114 kb on - strand, within HMPREF1078_RS09035 at 409.117 kb on + strand, within HMPREF1078_RS09035 at 409.117 kb on + strand, within HMPREF1078_RS09035 at 409.193 kb on - strand, within HMPREF1078_RS09035 at 409.193 kb on - strand, within HMPREF1078_RS09035 at 409.301 kb on - strand, within HMPREF1078_RS09035 at 409.342 kb on + strand at 409.364 kb on + strand at 409.365 kb on - strand at 409.381 kb on + strand at 409.391 kb on + strand at 409.392 kb on - strand at 409.441 kb on + strand, within HMPREF1078_RS09040 at 409.572 kb on + strand, within HMPREF1078_RS09040 at 409.575 kb on + strand, within HMPREF1078_RS09040 at 409.665 kb on + strand, within HMPREF1078_RS09040 at 409.666 kb on - strand, within HMPREF1078_RS09040 at 409.666 kb on - strand, within HMPREF1078_RS09040 at 409.666 kb on - strand, within HMPREF1078_RS09040 at 409.995 kb on + strand at 410.000 kb on + strand at 410.041 kb on - strand at 410.353 kb on + strand, within HMPREF1078_RS09045 at 410.354 kb on - strand, within HMPREF1078_RS09045 at 410.354 kb on - strand, within HMPREF1078_RS09045 at 410.373 kb on + strand, within HMPREF1078_RS09045 at 410.475 kb on + strand, within HMPREF1078_RS09045 at 410.476 kb on - strand, within HMPREF1078_RS09045 at 410.476 kb on - strand, within HMPREF1078_RS09045 at 410.666 kb on + strand, within HMPREF1078_RS09045 at 410.668 kb on + strand, within HMPREF1078_RS09045 at 410.669 kb on - strand, within HMPREF1078_RS09045 at 410.669 kb on - strand, within HMPREF1078_RS09045 at 410.805 kb on + strand, within HMPREF1078_RS09045 at 410.806 kb on - strand, within HMPREF1078_RS09045 at 410.806 kb on - strand, within HMPREF1078_RS09045 at 410.806 kb on - strand, within HMPREF1078_RS09045 at 410.812 kb on + strand, within HMPREF1078_RS09045 at 410.812 kb on + strand, within HMPREF1078_RS09045 at 410.813 kb on - strand, within HMPREF1078_RS09045 at 410.844 kb on - strand, within HMPREF1078_RS09045
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6 remove 408,478 - HMPREF1078_RS09030 0.82 -2.0 408,486 + HMPREF1078_RS09030 0.83 -1.7 408,488 + HMPREF1078_RS09030 0.83 -1.3 408,488 + HMPREF1078_RS09030 0.83 -1.6 408,488 + HMPREF1078_RS09030 0.83 +1.4 408,488 + HMPREF1078_RS09030 0.83 +0.9 408,488 + HMPREF1078_RS09030 0.83 +1.9 408,492 + HMPREF1078_RS09030 0.83 -0.5 408,493 - HMPREF1078_RS09030 0.83 -1.3 408,493 - HMPREF1078_RS09030 0.83 -0.4 408,494 + HMPREF1078_RS09030 0.83 -0.9 408,554 + HMPREF1078_RS09030 0.85 -1.4 408,585 - HMPREF1078_RS09030 0.86 +1.2 408,775 - -1.6 408,775 - +1.9 408,940 - -1.4 409,114 - HMPREF1078_RS09035 0.39 -0.9 409,117 + HMPREF1078_RS09035 0.40 -0.9 409,117 + HMPREF1078_RS09035 0.40 +0.9 409,193 - HMPREF1078_RS09035 0.60 -0.8 409,193 - HMPREF1078_RS09035 0.60 +0.8 409,301 - HMPREF1078_RS09035 0.88 -0.1 409,342 + -1.7 409,364 + -0.4 409,365 - -1.6 409,381 + -1.7 409,391 + -0.9 409,392 - +0.4 409,441 + HMPREF1078_RS09040 0.12 +0.4 409,572 + HMPREF1078_RS09040 0.32 -0.5 409,575 + HMPREF1078_RS09040 0.33 +0.7 409,665 + HMPREF1078_RS09040 0.47 +1.2 409,666 - HMPREF1078_RS09040 0.47 +1.2 409,666 - HMPREF1078_RS09040 0.47 -0.4 409,666 - HMPREF1078_RS09040 0.47 -0.4 409,995 + -0.4 410,000 + +1.2 410,041 - -1.3 410,353 + HMPREF1078_RS09045 0.35 -0.7 410,354 - HMPREF1078_RS09045 0.35 -0.2 410,354 - HMPREF1078_RS09045 0.35 -2.3 410,373 + HMPREF1078_RS09045 0.37 +1.6 410,475 + HMPREF1078_RS09045 0.47 -1.4 410,476 - HMPREF1078_RS09045 0.47 -1.1 410,476 - HMPREF1078_RS09045 0.47 +0.4 410,666 + HMPREF1078_RS09045 0.66 -3.2 410,668 + HMPREF1078_RS09045 0.66 -0.1 410,669 - HMPREF1078_RS09045 0.66 +2.2 410,669 - HMPREF1078_RS09045 0.66 -2.1 410,805 + HMPREF1078_RS09045 0.80 +0.8 410,806 - HMPREF1078_RS09045 0.80 -0.1 410,806 - HMPREF1078_RS09045 0.80 +1.9 410,806 - HMPREF1078_RS09045 0.80 +0.3 410,812 + HMPREF1078_RS09045 0.81 +1.0 410,812 + HMPREF1078_RS09045 0.81 +3.5 410,813 - HMPREF1078_RS09045 0.81 +1.0 410,844 - HMPREF1078_RS09045 0.84 +2.2
Or see this region's nucleotide sequence