Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06985

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS06975 and HMPREF1078_RS06980 are separated by 70 nucleotidesHMPREF1078_RS06980 and HMPREF1078_RS06985 are separated by 145 nucleotidesHMPREF1078_RS06985 and HMPREF1078_RS06990 are separated by 187 nucleotidesHMPREF1078_RS06990 and HMPREF1078_RS06995 are separated by 96 nucleotides HMPREF1078_RS06975: HMPREF1078_RS06975 - ABC transporter ATP-binding protein, at 803,808 to 804,476 _RS06975 HMPREF1078_RS06980: HMPREF1078_RS06980 - tRNA threonylcarbamoyladenosine dehydratase, at 804,547 to 805,272 _RS06980 HMPREF1078_RS06985: HMPREF1078_RS06985 - family 20 glycosylhydrolase, at 805,418 to 807,391 _RS06985 HMPREF1078_RS06990: HMPREF1078_RS06990 - hypothetical protein, at 807,579 to 807,905 _RS06990 HMPREF1078_RS06995: HMPREF1078_RS06995 - FAD-dependent oxidoreductase, at 808,002 to 809,864 _RS06995 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 804.535 kb on - strandat 804.535 kb on - strandat 804.574 kb on - strandat 804.574 kb on - strandat 804.579 kb on - strandat 804.587 kb on - strandat 804.587 kb on - strandat 804.591 kb on - strandat 804.613 kb on - strandat 805.013 kb on - strand, within HMPREF1078_RS06980at 805.087 kb on - strand, within HMPREF1078_RS06980at 805.148 kb on - strand, within HMPREF1078_RS06980at 805.181 kb on - strand, within HMPREF1078_RS06980at 805.181 kb on - strand, within HMPREF1078_RS06980at 805.181 kb on - strand, within HMPREF1078_RS06980at 805.204 kb on - strandat 805.375 kb on - strandat 805.417 kb on + strandat 805.426 kb on - strandat 805.426 kb on - strandat 805.426 kb on - strandat 805.434 kb on - strandat 805.489 kb on + strandat 805.561 kb on + strandat 805.578 kb on - strandat 805.578 kb on - strandat 805.599 kb on + strandat 805.631 kb on + strand, within HMPREF1078_RS06985at 805.632 kb on - strand, within HMPREF1078_RS06985at 805.632 kb on - strand, within HMPREF1078_RS06985at 805.793 kb on + strand, within HMPREF1078_RS06985at 805.794 kb on - strand, within HMPREF1078_RS06985at 805.880 kb on + strand, within HMPREF1078_RS06985at 805.938 kb on + strand, within HMPREF1078_RS06985at 805.939 kb on - strand, within HMPREF1078_RS06985at 805.946 kb on + strand, within HMPREF1078_RS06985at 805.946 kb on + strand, within HMPREF1078_RS06985at 805.965 kb on - strand, within HMPREF1078_RS06985at 805.968 kb on - strand, within HMPREF1078_RS06985at 805.969 kb on + strand, within HMPREF1078_RS06985at 805.970 kb on - strand, within HMPREF1078_RS06985at 806.018 kb on + strand, within HMPREF1078_RS06985at 806.018 kb on + strand, within HMPREF1078_RS06985at 806.019 kb on - strand, within HMPREF1078_RS06985at 806.021 kb on + strand, within HMPREF1078_RS06985at 806.045 kb on + strand, within HMPREF1078_RS06985at 806.046 kb on - strand, within HMPREF1078_RS06985at 806.102 kb on + strand, within HMPREF1078_RS06985at 806.107 kb on + strand, within HMPREF1078_RS06985at 806.204 kb on - strand, within HMPREF1078_RS06985at 806.237 kb on + strand, within HMPREF1078_RS06985at 806.238 kb on - strand, within HMPREF1078_RS06985at 806.276 kb on + strand, within HMPREF1078_RS06985at 806.276 kb on + strand, within HMPREF1078_RS06985at 806.306 kb on + strand, within HMPREF1078_RS06985at 806.320 kb on + strand, within HMPREF1078_RS06985at 806.332 kb on + strand, within HMPREF1078_RS06985at 806.422 kb on + strand, within HMPREF1078_RS06985at 806.422 kb on + strand, within HMPREF1078_RS06985at 806.499 kb on + strand, within HMPREF1078_RS06985at 806.531 kb on + strand, within HMPREF1078_RS06985at 806.531 kb on + strand, within HMPREF1078_RS06985at 806.533 kb on + strand, within HMPREF1078_RS06985at 806.573 kb on + strand, within HMPREF1078_RS06985at 806.574 kb on - strand, within HMPREF1078_RS06985at 806.584 kb on + strand, within HMPREF1078_RS06985at 806.584 kb on + strand, within HMPREF1078_RS06985at 806.607 kb on - strand, within HMPREF1078_RS06985at 806.607 kb on - strand, within HMPREF1078_RS06985at 806.607 kb on - strand, within HMPREF1078_RS06985at 806.608 kb on + strand, within HMPREF1078_RS06985at 806.627 kb on + strand, within HMPREF1078_RS06985at 806.634 kb on - strand, within HMPREF1078_RS06985at 806.685 kb on + strand, within HMPREF1078_RS06985at 806.685 kb on + strand, within HMPREF1078_RS06985at 806.731 kb on + strand, within HMPREF1078_RS06985at 806.848 kb on + strand, within HMPREF1078_RS06985at 806.849 kb on - strand, within HMPREF1078_RS06985at 806.859 kb on - strand, within HMPREF1078_RS06985at 806.923 kb on + strand, within HMPREF1078_RS06985at 807.086 kb on + strand, within HMPREF1078_RS06985at 807.086 kb on + strand, within HMPREF1078_RS06985at 807.086 kb on + strand, within HMPREF1078_RS06985at 807.135 kb on - strand, within HMPREF1078_RS06985at 807.143 kb on - strand, within HMPREF1078_RS06985at 807.219 kb on - strandat 807.230 kb on - strandat 807.264 kb on - strandat 807.309 kb on + strandat 807.389 kb on + strandat 807.390 kb on - strandat 807.390 kb on - strandat 807.390 kb on - strandat 807.390 kb on - strandat 807.418 kb on - strandat 807.539 kb on + strandat 807.539 kb on + strandat 807.539 kb on + strandat 807.560 kb on - strandat 807.595 kb on + strandat 807.632 kb on - strand, within HMPREF1078_RS06990at 807.670 kb on + strand, within HMPREF1078_RS06990at 807.670 kb on + strand, within HMPREF1078_RS06990at 807.673 kb on - strand, within HMPREF1078_RS06990at 807.719 kb on + strand, within HMPREF1078_RS06990at 807.771 kb on + strand, within HMPREF1078_RS06990at 807.798 kb on + strand, within HMPREF1078_RS06990at 807.798 kb on + strand, within HMPREF1078_RS06990at 807.799 kb on - strand, within HMPREF1078_RS06990at 807.800 kb on + strand, within HMPREF1078_RS06990at 807.800 kb on + strand, within HMPREF1078_RS06990at 807.800 kb on + strand, within HMPREF1078_RS06990at 807.830 kb on + strand, within HMPREF1078_RS06990at 807.845 kb on + strand, within HMPREF1078_RS06990at 807.927 kb on - strandat 807.956 kb on - strandat 807.963 kb on + strandat 808.003 kb on + strandat 808.062 kb on + strandat 808.156 kb on + strandat 808.156 kb on + strandat 808.226 kb on + strand, within HMPREF1078_RS06995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6
remove
804,535 - -2.9
804,535 - -0.4
804,574 - -0.0
804,574 - -1.2
804,579 - +0.7
804,587 - +2.0
804,587 - -1.6
804,591 - -1.7
804,613 - -0.5
805,013 - HMPREF1078_RS06980 0.64 +0.3
805,087 - HMPREF1078_RS06980 0.74 -1.5
805,148 - HMPREF1078_RS06980 0.83 +1.0
805,181 - HMPREF1078_RS06980 0.87 -0.2
805,181 - HMPREF1078_RS06980 0.87 -1.0
805,181 - HMPREF1078_RS06980 0.87 -0.4
805,204 - -0.0
805,375 - +0.8
805,417 + +1.0
805,426 - -0.2
805,426 - +2.0
805,426 - +0.4
805,434 - +1.0
805,489 + +0.4
805,561 + +0.1
805,578 - +1.0
805,578 - -1.9
805,599 + +2.0
805,631 + HMPREF1078_RS06985 0.11 -1.5
805,632 - HMPREF1078_RS06985 0.11 +0.8
805,632 - HMPREF1078_RS06985 0.11 +0.1
805,793 + HMPREF1078_RS06985 0.19 -3.0
805,794 - HMPREF1078_RS06985 0.19 -1.8
805,880 + HMPREF1078_RS06985 0.23 +3.0
805,938 + HMPREF1078_RS06985 0.26 +1.0
805,939 - HMPREF1078_RS06985 0.26 -0.0
805,946 + HMPREF1078_RS06985 0.27 -2.0
805,946 + HMPREF1078_RS06985 0.27 -1.4
805,965 - HMPREF1078_RS06985 0.28 +0.0
805,968 - HMPREF1078_RS06985 0.28 +4.0
805,969 + HMPREF1078_RS06985 0.28 +1.0
805,970 - HMPREF1078_RS06985 0.28 +1.1
806,018 + HMPREF1078_RS06985 0.30 -2.8
806,018 + HMPREF1078_RS06985 0.30 -0.9
806,019 - HMPREF1078_RS06985 0.30 -2.1
806,021 + HMPREF1078_RS06985 0.31 -0.2
806,045 + HMPREF1078_RS06985 0.32 +0.5
806,046 - HMPREF1078_RS06985 0.32 -0.6
806,102 + HMPREF1078_RS06985 0.35 +1.8
806,107 + HMPREF1078_RS06985 0.35 -2.0
806,204 - HMPREF1078_RS06985 0.40 -0.8
806,237 + HMPREF1078_RS06985 0.41 -0.4
806,238 - HMPREF1078_RS06985 0.42 -0.5
806,276 + HMPREF1078_RS06985 0.43 +0.7
806,276 + HMPREF1078_RS06985 0.43 -1.6
806,306 + HMPREF1078_RS06985 0.45 -0.6
806,320 + HMPREF1078_RS06985 0.46 -3.0
806,332 + HMPREF1078_RS06985 0.46 -1.4
806,422 + HMPREF1078_RS06985 0.51 -2.5
806,422 + HMPREF1078_RS06985 0.51 -1.6
806,499 + HMPREF1078_RS06985 0.55 +0.4
806,531 + HMPREF1078_RS06985 0.56 +0.5
806,531 + HMPREF1078_RS06985 0.56 -0.5
806,533 + HMPREF1078_RS06985 0.56 +0.2
806,573 + HMPREF1078_RS06985 0.59 -2.1
806,574 - HMPREF1078_RS06985 0.59 +0.4
806,584 + HMPREF1078_RS06985 0.59 -2.5
806,584 + HMPREF1078_RS06985 0.59 -2.0
806,607 - HMPREF1078_RS06985 0.60 -0.9
806,607 - HMPREF1078_RS06985 0.60 +2.1
806,607 - HMPREF1078_RS06985 0.60 -0.6
806,608 + HMPREF1078_RS06985 0.60 -1.6
806,627 + HMPREF1078_RS06985 0.61 +1.2
806,634 - HMPREF1078_RS06985 0.62 +0.3
806,685 + HMPREF1078_RS06985 0.64 -0.6
806,685 + HMPREF1078_RS06985 0.64 -1.0
806,731 + HMPREF1078_RS06985 0.67 -1.3
806,848 + HMPREF1078_RS06985 0.72 +2.4
806,849 - HMPREF1078_RS06985 0.72 -1.2
806,859 - HMPREF1078_RS06985 0.73 +1.0
806,923 + HMPREF1078_RS06985 0.76 -0.5
807,086 + HMPREF1078_RS06985 0.84 -0.5
807,086 + HMPREF1078_RS06985 0.84 -2.0
807,086 + HMPREF1078_RS06985 0.84 +0.1
807,135 - HMPREF1078_RS06985 0.87 -2.2
807,143 - HMPREF1078_RS06985 0.87 -2.0
807,219 - -0.5
807,230 - -0.5
807,264 - +0.5
807,309 + -0.0
807,389 + +3.0
807,390 - +2.0
807,390 - +2.0
807,390 - -0.0
807,390 - -0.8
807,418 - -1.4
807,539 + +0.5
807,539 + -1.8
807,539 + -1.0
807,560 - +1.1
807,595 + -2.6
807,632 - HMPREF1078_RS06990 0.16 -0.5
807,670 + HMPREF1078_RS06990 0.28 +0.1
807,670 + HMPREF1078_RS06990 0.28 +0.1
807,673 - HMPREF1078_RS06990 0.29 +0.5
807,719 + HMPREF1078_RS06990 0.43 -1.4
807,771 + HMPREF1078_RS06990 0.59 +2.4
807,798 + HMPREF1078_RS06990 0.67 -1.4
807,798 + HMPREF1078_RS06990 0.67 +0.1
807,799 - HMPREF1078_RS06990 0.67 +1.6
807,800 + HMPREF1078_RS06990 0.68 +0.7
807,800 + HMPREF1078_RS06990 0.68 +1.0
807,800 + HMPREF1078_RS06990 0.68 -2.2
807,830 + HMPREF1078_RS06990 0.77 -1.0
807,845 + HMPREF1078_RS06990 0.81 +1.0
807,927 - -1.5
807,956 - +0.0
807,963 + +0.1
808,003 + -1.3
808,062 + +0.8
808,156 + -2.6
808,156 + -0.6
808,226 + HMPREF1078_RS06995 0.12 -0.6

Or see this region's nucleotide sequence