Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05960 and HMPREF1078_RS05965 are separated by 28 nucleotides HMPREF1078_RS05965 and HMPREF1078_RS05970 are separated by 16 nucleotides
HMPREF1078_RS05960: HMPREF1078_RS05960 - ABC transporter permease, at 527,822 to 530,245
_RS05960
HMPREF1078_RS05965: HMPREF1078_RS05965 - ABC transporter ATP-binding protein, at 530,274 to 530,936
_RS05965
HMPREF1078_RS05970: HMPREF1078_RS05970 - ABC transporter permease, at 530,953 to 533,358
_RS05970
Position (kb) 530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 529.277 kb on + strand, within HMPREF1078_RS05960 at 529.278 kb on - strand, within HMPREF1078_RS05960 at 529.322 kb on - strand, within HMPREF1078_RS05960 at 529.329 kb on + strand, within HMPREF1078_RS05960 at 529.346 kb on - strand, within HMPREF1078_RS05960 at 529.384 kb on + strand, within HMPREF1078_RS05960 at 529.501 kb on + strand, within HMPREF1078_RS05960 at 529.503 kb on + strand, within HMPREF1078_RS05960 at 529.573 kb on - strand, within HMPREF1078_RS05960 at 529.629 kb on + strand, within HMPREF1078_RS05960 at 529.629 kb on + strand, within HMPREF1078_RS05960 at 529.661 kb on - strand, within HMPREF1078_RS05960 at 529.672 kb on + strand, within HMPREF1078_RS05960 at 529.672 kb on + strand, within HMPREF1078_RS05960 at 529.672 kb on + strand, within HMPREF1078_RS05960 at 529.673 kb on - strand, within HMPREF1078_RS05960 at 529.712 kb on + strand, within HMPREF1078_RS05960 at 529.713 kb on - strand, within HMPREF1078_RS05960 at 529.790 kb on - strand, within HMPREF1078_RS05960 at 529.794 kb on - strand, within HMPREF1078_RS05960 at 529.794 kb on - strand, within HMPREF1078_RS05960 at 529.883 kb on + strand, within HMPREF1078_RS05960 at 529.883 kb on + strand, within HMPREF1078_RS05960 at 529.884 kb on - strand, within HMPREF1078_RS05960 at 529.885 kb on + strand, within HMPREF1078_RS05960 at 529.885 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.959 kb on + strand, within HMPREF1078_RS05960 at 529.997 kb on - strand, within HMPREF1078_RS05960 at 530.096 kb on - strand at 530.125 kb on - strand at 530.389 kb on - strand, within HMPREF1078_RS05965 at 530.393 kb on - strand, within HMPREF1078_RS05965 at 530.512 kb on - strand, within HMPREF1078_RS05965 at 530.546 kb on + strand, within HMPREF1078_RS05965 at 530.608 kb on + strand, within HMPREF1078_RS05965 at 530.673 kb on + strand, within HMPREF1078_RS05965 at 530.730 kb on + strand, within HMPREF1078_RS05965 at 530.730 kb on + strand, within HMPREF1078_RS05965 at 530.790 kb on - strand, within HMPREF1078_RS05965 at 530.796 kb on + strand, within HMPREF1078_RS05965 at 530.936 kb on + strand at 530.940 kb on - strand at 530.942 kb on - strand at 531.030 kb on + strand at 531.059 kb on + strand at 531.092 kb on + strand at 531.093 kb on - strand at 531.142 kb on + strand at 531.143 kb on - strand at 531.143 kb on - strand at 531.159 kb on + strand at 531.360 kb on + strand, within HMPREF1078_RS05970 at 531.361 kb on - strand, within HMPREF1078_RS05970 at 531.387 kb on - strand, within HMPREF1078_RS05970 at 531.410 kb on + strand, within HMPREF1078_RS05970 at 531.740 kb on + strand, within HMPREF1078_RS05970 at 531.831 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.890 kb on + strand, within HMPREF1078_RS05970 at 531.891 kb on - strand, within HMPREF1078_RS05970 at 531.895 kb on + strand, within HMPREF1078_RS05970
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6 remove 529,277 + HMPREF1078_RS05960 0.60 -0.0 529,278 - HMPREF1078_RS05960 0.60 -0.9 529,322 - HMPREF1078_RS05960 0.62 -1.5 529,329 + HMPREF1078_RS05960 0.62 -1.4 529,346 - HMPREF1078_RS05960 0.63 +0.5 529,384 + HMPREF1078_RS05960 0.64 +2.0 529,501 + HMPREF1078_RS05960 0.69 +0.4 529,503 + HMPREF1078_RS05960 0.69 -0.8 529,573 - HMPREF1078_RS05960 0.72 +0.4 529,629 + HMPREF1078_RS05960 0.75 -0.1 529,629 + HMPREF1078_RS05960 0.75 -0.6 529,661 - HMPREF1078_RS05960 0.76 +1.7 529,672 + HMPREF1078_RS05960 0.76 -1.3 529,672 + HMPREF1078_RS05960 0.76 +0.4 529,672 + HMPREF1078_RS05960 0.76 +0.1 529,673 - HMPREF1078_RS05960 0.76 +0.2 529,712 + HMPREF1078_RS05960 0.78 +4.0 529,713 - HMPREF1078_RS05960 0.78 -0.7 529,790 - HMPREF1078_RS05960 0.81 +0.7 529,794 - HMPREF1078_RS05960 0.81 +2.6 529,794 - HMPREF1078_RS05960 0.81 +0.7 529,883 + HMPREF1078_RS05960 0.85 +1.4 529,883 + HMPREF1078_RS05960 0.85 +0.5 529,884 - HMPREF1078_RS05960 0.85 +0.3 529,885 + HMPREF1078_RS05960 0.85 +0.4 529,885 + HMPREF1078_RS05960 0.85 -1.2 529,959 + HMPREF1078_RS05960 0.88 -1.0 529,959 + HMPREF1078_RS05960 0.88 -0.4 529,959 + HMPREF1078_RS05960 0.88 -0.1 529,959 + HMPREF1078_RS05960 0.88 -1.6 529,997 - HMPREF1078_RS05960 0.90 +2.0 530,096 - -2.2 530,125 - -2.0 530,389 - HMPREF1078_RS05965 0.17 +1.0 530,393 - HMPREF1078_RS05965 0.18 +2.0 530,512 - HMPREF1078_RS05965 0.36 -0.8 530,546 + HMPREF1078_RS05965 0.41 +0.4 530,608 + HMPREF1078_RS05965 0.50 +0.3 530,673 + HMPREF1078_RS05965 0.60 +0.5 530,730 + HMPREF1078_RS05965 0.69 -0.0 530,730 + HMPREF1078_RS05965 0.69 +1.2 530,790 - HMPREF1078_RS05965 0.78 -1.4 530,796 + HMPREF1078_RS05965 0.79 +0.2 530,936 + -0.3 530,940 - -0.8 530,942 - -2.6 531,030 + +2.0 531,059 + -0.9 531,092 + -1.0 531,093 - -2.8 531,142 + +4.2 531,143 - +2.0 531,143 - -0.3 531,159 + -0.2 531,360 + HMPREF1078_RS05970 0.17 -2.8 531,361 - HMPREF1078_RS05970 0.17 +0.2 531,387 - HMPREF1078_RS05970 0.18 -1.5 531,410 + HMPREF1078_RS05970 0.19 -2.1 531,740 + HMPREF1078_RS05970 0.33 -0.6 531,831 + HMPREF1078_RS05970 0.36 +0.2 531,890 + HMPREF1078_RS05970 0.39 -0.3 531,890 + HMPREF1078_RS05970 0.39 +1.1 531,890 + HMPREF1078_RS05970 0.39 +1.5 531,890 + HMPREF1078_RS05970 0.39 -2.3 531,890 + HMPREF1078_RS05970 0.39 -0.4 531,891 - HMPREF1078_RS05970 0.39 +0.5 531,895 + HMPREF1078_RS05970 0.39 -1.3
Or see this region's nucleotide sequence