Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04465 and HMPREF1078_RS04470 are separated by 81 nucleotides HMPREF1078_RS04470 and HMPREF1078_RS04475 are separated by 73 nucleotides HMPREF1078_RS04475 and HMPREF1078_RS04480 are separated by 15 nucleotides HMPREF1078_RS04480 and HMPREF1078_RS04485 are separated by 7 nucleotides HMPREF1078_RS04485 and HMPREF1078_RS04490 are separated by 126 nucleotides
HMPREF1078_RS04465: HMPREF1078_RS04465 - HU family DNA-binding protein, at 128,389 to 128,835
_RS04465
HMPREF1078_RS04470: HMPREF1078_RS04470 - DUF4248 domain-containing protein, at 128,917 to 129,141
_RS04470
HMPREF1078_RS04475: HMPREF1078_RS04475 - glucosaminidase domain-containing protein, at 129,215 to 129,715
_RS04475
HMPREF1078_RS04480: HMPREF1078_RS04480 - hypothetical protein, at 129,731 to 130,078
_RS04480
HMPREF1078_RS04485: HMPREF1078_RS04485 - T9SS type A sorting domain-containing protein, at 130,086 to 130,415
_RS04485
HMPREF1078_RS04490: HMPREF1078_RS04490 - ribonuclease Z, at 130,542 to 131,456
_RS04490
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 128.756 kb on - strand, within HMPREF1078_RS04465 at 128.869 kb on - strand at 128.946 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 128.970 kb on - strand, within HMPREF1078_RS04470 at 129.073 kb on - strand, within HMPREF1078_RS04470 at 129.112 kb on + strand, within HMPREF1078_RS04470 at 129.113 kb on - strand, within HMPREF1078_RS04470 at 129.181 kb on - strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.212 kb on - strand at 129.213 kb on + strand at 129.213 kb on + strand at 129.238 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.383 kb on + strand, within HMPREF1078_RS04475 at 129.462 kb on - strand, within HMPREF1078_RS04475 at 129.581 kb on + strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.699 kb on + strand at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.964 kb on + strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 130.046 kb on + strand at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.270 kb on + strand, within HMPREF1078_RS04485 at 130.271 kb on - strand, within HMPREF1078_RS04485 at 130.401 kb on - strand at 130.415 kb on + strand at 130.416 kb on - strand at 130.418 kb on - strand at 130.418 kb on - strand at 130.436 kb on - strand at 130.464 kb on + strand at 130.478 kb on + strand at 130.631 kb on - strand at 130.810 kb on + strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.923 kb on - strand, within HMPREF1078_RS04490 at 130.977 kb on - strand, within HMPREF1078_RS04490 at 131.009 kb on - strand, within HMPREF1078_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6 remove 128,756 - HMPREF1078_RS04465 0.82 +0.3 128,869 - +0.5 128,946 - HMPREF1078_RS04470 0.13 +0.0 128,970 - HMPREF1078_RS04470 0.24 -0.8 128,970 - HMPREF1078_RS04470 0.24 +0.3 129,073 - HMPREF1078_RS04470 0.69 -1.3 129,112 + HMPREF1078_RS04470 0.87 +0.5 129,113 - HMPREF1078_RS04470 0.87 -1.2 129,181 - +0.0 129,211 + -1.7 129,211 + -1.4 129,211 + -0.2 129,212 - +1.4 129,213 + -0.8 129,213 + -0.5 129,238 - -1.0 129,242 - -1.0 129,242 - -1.9 129,242 - -0.0 129,383 + HMPREF1078_RS04475 0.34 +0.7 129,462 - HMPREF1078_RS04475 0.49 +2.0 129,581 + HMPREF1078_RS04475 0.73 -0.8 129,584 - HMPREF1078_RS04475 0.74 -1.2 129,584 - HMPREF1078_RS04475 0.74 +1.6 129,699 + +0.2 129,962 + HMPREF1078_RS04480 0.66 +0.2 129,962 + HMPREF1078_RS04480 0.66 +2.0 129,962 + HMPREF1078_RS04480 0.66 -0.8 129,962 + HMPREF1078_RS04480 0.66 -0.6 129,963 - HMPREF1078_RS04480 0.67 +0.4 129,963 - HMPREF1078_RS04480 0.67 -3.4 129,963 - HMPREF1078_RS04480 0.67 -1.7 129,964 + HMPREF1078_RS04480 0.67 +2.0 129,965 - HMPREF1078_RS04480 0.67 +0.2 129,965 - HMPREF1078_RS04480 0.67 +0.0 130,046 + -1.8 130,132 + HMPREF1078_RS04485 0.14 -3.4 130,132 + HMPREF1078_RS04485 0.14 +0.0 130,133 - HMPREF1078_RS04485 0.14 -2.5 130,133 - HMPREF1078_RS04485 0.14 +0.5 130,133 - HMPREF1078_RS04485 0.14 -2.8 130,133 - HMPREF1078_RS04485 0.14 -2.7 130,133 - HMPREF1078_RS04485 0.14 -2.3 130,135 + HMPREF1078_RS04485 0.15 -2.1 130,135 + HMPREF1078_RS04485 0.15 +0.0 130,157 + HMPREF1078_RS04485 0.22 -2.4 130,157 + HMPREF1078_RS04485 0.22 +0.0 130,157 + HMPREF1078_RS04485 0.22 +1.0 130,158 - HMPREF1078_RS04485 0.22 -2.8 130,158 - HMPREF1078_RS04485 0.22 -1.2 130,158 - HMPREF1078_RS04485 0.22 -2.0 130,206 + HMPREF1078_RS04485 0.36 -3.2 130,206 + HMPREF1078_RS04485 0.36 -1.2 130,270 + HMPREF1078_RS04485 0.56 -1.8 130,271 - HMPREF1078_RS04485 0.56 -2.6 130,401 - -1.4 130,415 + +0.5 130,416 - -2.9 130,418 - +3.0 130,418 - +0.0 130,436 - -0.3 130,464 + +2.5 130,478 + +0.3 130,631 - +0.1 130,810 + HMPREF1078_RS04490 0.29 +1.1 130,811 - HMPREF1078_RS04490 0.29 -2.5 130,811 - HMPREF1078_RS04490 0.29 -0.6 130,904 - HMPREF1078_RS04490 0.40 +1.0 130,904 - HMPREF1078_RS04490 0.40 +0.3 130,922 + HMPREF1078_RS04490 0.42 +0.0 130,922 + HMPREF1078_RS04490 0.42 +0.5 130,923 - HMPREF1078_RS04490 0.42 +1.1 130,977 - HMPREF1078_RS04490 0.48 -0.1 131,009 - HMPREF1078_RS04490 0.51 +0.6
Or see this region's nucleotide sequence