Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03475 and HMPREF1078_RS03480 overlap by 10 nucleotides HMPREF1078_RS03480 and HMPREF1078_RS03485 are separated by 21 nucleotides HMPREF1078_RS03485 and HMPREF1078_RS03490 are separated by 139 nucleotides
HMPREF1078_RS03475: HMPREF1078_RS03475 - thiamine phosphate synthase, at 820,869 to 821,468
_RS03475
HMPREF1078_RS03480: HMPREF1078_RS03480 - thiamine phosphate synthase, at 821,459 to 822,196
_RS03480
HMPREF1078_RS03485: HMPREF1078_RS03485 - phosphomethylpyrimidine synthase ThiC, at 822,218 to 823,924
_RS03485
HMPREF1078_RS03490: HMPREF1078_RS03490 - response regulator transcription factor, at 824,064 to 824,963
_RS03490
Position (kb) 822
823
824 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 821.227 kb on + strand, within HMPREF1078_RS03475 at 821.317 kb on + strand, within HMPREF1078_RS03475 at 821.317 kb on + strand, within HMPREF1078_RS03475 at 821.318 kb on - strand, within HMPREF1078_RS03475 at 821.327 kb on - strand, within HMPREF1078_RS03475 at 821.327 kb on - strand, within HMPREF1078_RS03475 at 821.350 kb on + strand, within HMPREF1078_RS03475 at 821.417 kb on + strand at 821.430 kb on - strand at 821.443 kb on - strand at 821.444 kb on + strand at 821.444 kb on + strand at 821.444 kb on + strand at 821.445 kb on - strand at 821.504 kb on + strand at 821.505 kb on - strand at 821.574 kb on - strand, within HMPREF1078_RS03480 at 821.605 kb on + strand, within HMPREF1078_RS03480 at 821.605 kb on + strand, within HMPREF1078_RS03480 at 821.800 kb on + strand, within HMPREF1078_RS03480 at 821.894 kb on + strand, within HMPREF1078_RS03480 at 821.894 kb on + strand, within HMPREF1078_RS03480 at 821.895 kb on - strand, within HMPREF1078_RS03480 at 821.895 kb on - strand, within HMPREF1078_RS03480 at 821.895 kb on - strand, within HMPREF1078_RS03480 at 821.898 kb on + strand, within HMPREF1078_RS03480 at 821.899 kb on - strand, within HMPREF1078_RS03480 at 821.919 kb on - strand, within HMPREF1078_RS03480 at 822.072 kb on + strand, within HMPREF1078_RS03480 at 822.161 kb on - strand at 822.194 kb on + strand at 822.195 kb on + strand at 822.217 kb on + strand at 822.218 kb on - strand at 822.218 kb on - strand at 822.237 kb on + strand at 822.237 kb on + strand at 822.248 kb on + strand at 822.269 kb on + strand at 822.285 kb on + strand at 822.285 kb on + strand at 822.285 kb on + strand at 822.286 kb on - strand at 822.286 kb on - strand at 822.389 kb on + strand, within HMPREF1078_RS03485 at 822.389 kb on + strand, within HMPREF1078_RS03485 at 822.389 kb on + strand, within HMPREF1078_RS03485 at 822.394 kb on + strand, within HMPREF1078_RS03485 at 822.407 kb on + strand, within HMPREF1078_RS03485 at 822.433 kb on + strand, within HMPREF1078_RS03485 at 822.433 kb on + strand, within HMPREF1078_RS03485 at 822.433 kb on + strand, within HMPREF1078_RS03485 at 822.579 kb on + strand, within HMPREF1078_RS03485 at 822.579 kb on + strand, within HMPREF1078_RS03485 at 822.579 kb on + strand, within HMPREF1078_RS03485 at 822.584 kb on + strand, within HMPREF1078_RS03485 at 822.621 kb on - strand, within HMPREF1078_RS03485 at 822.621 kb on - strand, within HMPREF1078_RS03485 at 822.658 kb on - strand, within HMPREF1078_RS03485 at 822.660 kb on - strand, within HMPREF1078_RS03485 at 822.710 kb on + strand, within HMPREF1078_RS03485 at 822.711 kb on - strand, within HMPREF1078_RS03485 at 822.839 kb on - strand, within HMPREF1078_RS03485 at 822.867 kb on + strand, within HMPREF1078_RS03485 at 822.891 kb on + strand, within HMPREF1078_RS03485 at 822.891 kb on + strand, within HMPREF1078_RS03485 at 822.946 kb on + strand, within HMPREF1078_RS03485 at 822.977 kb on - strand, within HMPREF1078_RS03485 at 823.201 kb on + strand, within HMPREF1078_RS03485 at 823.201 kb on + strand, within HMPREF1078_RS03485 at 823.257 kb on + strand, within HMPREF1078_RS03485 at 823.258 kb on - strand, within HMPREF1078_RS03485 at 823.277 kb on + strand, within HMPREF1078_RS03485 at 823.278 kb on - strand, within HMPREF1078_RS03485 at 823.325 kb on + strand, within HMPREF1078_RS03485 at 823.325 kb on + strand, within HMPREF1078_RS03485 at 823.326 kb on - strand, within HMPREF1078_RS03485 at 823.326 kb on - strand, within HMPREF1078_RS03485 at 823.363 kb on + strand, within HMPREF1078_RS03485 at 823.363 kb on + strand, within HMPREF1078_RS03485 at 823.444 kb on + strand, within HMPREF1078_RS03485 at 823.445 kb on - strand, within HMPREF1078_RS03485 at 823.475 kb on + strand, within HMPREF1078_RS03485 at 823.476 kb on - strand, within HMPREF1078_RS03485 at 823.476 kb on - strand, within HMPREF1078_RS03485 at 823.526 kb on - strand, within HMPREF1078_RS03485 at 823.526 kb on - strand, within HMPREF1078_RS03485 at 823.539 kb on - strand, within HMPREF1078_RS03485 at 823.605 kb on - strand, within HMPREF1078_RS03485 at 823.605 kb on - strand, within HMPREF1078_RS03485 at 823.818 kb on - strand at 823.847 kb on + strand at 823.899 kb on + strand at 823.900 kb on - strand at 823.903 kb on + strand at 823.920 kb on + strand at 823.921 kb on - strand at 823.921 kb on - strand at 823.923 kb on - strand at 823.923 kb on - strand at 823.954 kb on + strand at 823.954 kb on + strand at 823.954 kb on + strand at 823.954 kb on + strand at 823.955 kb on - strand at 823.955 kb on - strand at 823.955 kb on - strand at 823.956 kb on + strand at 823.957 kb on - strand at 823.957 kb on - strand at 823.958 kb on + strand at 823.959 kb on - strand at 823.973 kb on - strand at 823.974 kb on + strand at 823.974 kb on + strand at 823.974 kb on + strand at 823.975 kb on - strand at 823.989 kb on - strand at 824.156 kb on - strand, within HMPREF1078_RS03490 at 824.226 kb on + strand, within HMPREF1078_RS03490 at 824.230 kb on + strand, within HMPREF1078_RS03490 at 824.230 kb on + strand, within HMPREF1078_RS03490 at 824.231 kb on - strand, within HMPREF1078_RS03490 at 824.231 kb on - strand, within HMPREF1078_RS03490 at 824.231 kb on - strand, within HMPREF1078_RS03490 at 824.317 kb on - strand, within HMPREF1078_RS03490 at 824.360 kb on - strand, within HMPREF1078_RS03490 at 824.428 kb on - strand, within HMPREF1078_RS03490 at 824.434 kb on + strand, within HMPREF1078_RS03490 at 824.435 kb on - strand, within HMPREF1078_RS03490 at 824.445 kb on - strand, within HMPREF1078_RS03490 at 824.449 kb on + strand, within HMPREF1078_RS03490 at 824.492 kb on + strand, within HMPREF1078_RS03490 at 824.493 kb on - strand, within HMPREF1078_RS03490 at 824.493 kb on - strand, within HMPREF1078_RS03490 at 824.493 kb on - strand, within HMPREF1078_RS03490 at 824.493 kb on - strand, within HMPREF1078_RS03490 at 824.493 kb on - strand, within HMPREF1078_RS03490 at 824.611 kb on + strand, within HMPREF1078_RS03490 at 824.612 kb on - strand, within HMPREF1078_RS03490 at 824.646 kb on + strand, within HMPREF1078_RS03490 at 824.647 kb on - strand, within HMPREF1078_RS03490 at 824.702 kb on + strand, within HMPREF1078_RS03490 at 824.702 kb on + strand, within HMPREF1078_RS03490 at 824.780 kb on - strand, within HMPREF1078_RS03490 at 824.780 kb on - strand, within HMPREF1078_RS03490 at 824.785 kb on - strand, within HMPREF1078_RS03490 at 824.802 kb on + strand, within HMPREF1078_RS03490 at 824.802 kb on + strand, within HMPREF1078_RS03490 at 824.802 kb on + strand, within HMPREF1078_RS03490 at 824.803 kb on - strand, within HMPREF1078_RS03490 at 824.804 kb on + strand, within HMPREF1078_RS03490 at 824.805 kb on - strand, within HMPREF1078_RS03490 at 824.805 kb on - strand, within HMPREF1078_RS03490 at 824.815 kb on + strand, within HMPREF1078_RS03490 at 824.824 kb on + strand, within HMPREF1078_RS03490 at 824.824 kb on + strand, within HMPREF1078_RS03490 at 824.903 kb on + strand at 824.907 kb on + strand at 824.907 kb on + strand at 824.907 kb on + strand at 824.907 kb on + strand at 824.907 kb on + strand at 824.907 kb on + strand at 824.907 kb on + strand at 824.908 kb on - strand at 824.908 kb on - strand at 824.908 kb on - strand at 824.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day6 remove 821,227 + HMPREF1078_RS03475 0.60 +1.9 821,317 + HMPREF1078_RS03475 0.75 -1.7 821,317 + HMPREF1078_RS03475 0.75 -1.4 821,318 - HMPREF1078_RS03475 0.75 +1.2 821,327 - HMPREF1078_RS03475 0.76 +0.2 821,327 - HMPREF1078_RS03475 0.76 -0.7 821,350 + HMPREF1078_RS03475 0.80 -0.2 821,417 + +0.3 821,430 - +0.9 821,443 - -1.1 821,444 + +0.9 821,444 + +1.9 821,444 + +0.9 821,445 - -0.4 821,504 + -2.4 821,505 - -0.7 821,574 - HMPREF1078_RS03480 0.16 +0.9 821,605 + HMPREF1078_RS03480 0.20 -1.3 821,605 + HMPREF1078_RS03480 0.20 -0.4 821,800 + HMPREF1078_RS03480 0.46 -1.6 821,894 + HMPREF1078_RS03480 0.59 +1.9 821,894 + HMPREF1078_RS03480 0.59 +1.9 821,895 - HMPREF1078_RS03480 0.59 -0.7 821,895 - HMPREF1078_RS03480 0.59 +2.9 821,895 - HMPREF1078_RS03480 0.59 -1.0 821,898 + HMPREF1078_RS03480 0.59 -0.7 821,899 - HMPREF1078_RS03480 0.60 -0.1 821,919 - HMPREF1078_RS03480 0.62 +2.6 822,072 + HMPREF1078_RS03480 0.83 +0.5 822,161 - -0.2 822,194 + -1.9 822,195 + +1.2 822,217 + -1.6 822,218 - +0.3 822,218 - +1.9 822,237 + +0.1 822,237 + +4.0 822,248 + +0.3 822,269 + +1.6 822,285 + -1.2 822,285 + +3.5 822,285 + +1.4 822,286 - -0.1 822,286 - -0.4 822,389 + HMPREF1078_RS03485 0.10 +1.4 822,389 + HMPREF1078_RS03485 0.10 +0.1 822,389 + HMPREF1078_RS03485 0.10 +0.8 822,394 + HMPREF1078_RS03485 0.10 +3.9 822,407 + HMPREF1078_RS03485 0.11 +1.9 822,433 + HMPREF1078_RS03485 0.13 +0.7 822,433 + HMPREF1078_RS03485 0.13 -0.7 822,433 + HMPREF1078_RS03485 0.13 -4.8 822,579 + HMPREF1078_RS03485 0.21 +2.1 822,579 + HMPREF1078_RS03485 0.21 +2.8 822,579 + HMPREF1078_RS03485 0.21 +1.5 822,584 + HMPREF1078_RS03485 0.21 +0.1 822,621 - HMPREF1078_RS03485 0.24 +1.4 822,621 - HMPREF1078_RS03485 0.24 +2.0 822,658 - HMPREF1078_RS03485 0.26 -0.3 822,660 - HMPREF1078_RS03485 0.26 +1.6 822,710 + HMPREF1078_RS03485 0.29 +1.3 822,711 - HMPREF1078_RS03485 0.29 +0.8 822,839 - HMPREF1078_RS03485 0.36 +0.5 822,867 + HMPREF1078_RS03485 0.38 -0.1 822,891 + HMPREF1078_RS03485 0.39 +2.9 822,891 + HMPREF1078_RS03485 0.39 -0.4 822,946 + HMPREF1078_RS03485 0.43 -1.9 822,977 - HMPREF1078_RS03485 0.44 -1.4 823,201 + HMPREF1078_RS03485 0.58 -2.0 823,201 + HMPREF1078_RS03485 0.58 +1.0 823,257 + HMPREF1078_RS03485 0.61 +1.0 823,258 - HMPREF1078_RS03485 0.61 +0.0 823,277 + HMPREF1078_RS03485 0.62 +0.8 823,278 - HMPREF1078_RS03485 0.62 +0.3 823,325 + HMPREF1078_RS03485 0.65 +0.3 823,325 + HMPREF1078_RS03485 0.65 -1.5 823,326 - HMPREF1078_RS03485 0.65 -0.2 823,326 - HMPREF1078_RS03485 0.65 +0.1 823,363 + HMPREF1078_RS03485 0.67 +0.5 823,363 + HMPREF1078_RS03485 0.67 +0.5 823,444 + HMPREF1078_RS03485 0.72 +1.5 823,445 - HMPREF1078_RS03485 0.72 +0.3 823,475 + HMPREF1078_RS03485 0.74 +0.9 823,476 - HMPREF1078_RS03485 0.74 +2.3 823,476 - HMPREF1078_RS03485 0.74 -0.1 823,526 - HMPREF1078_RS03485 0.77 +1.5 823,526 - HMPREF1078_RS03485 0.77 -0.2 823,539 - HMPREF1078_RS03485 0.77 -1.0 823,605 - HMPREF1078_RS03485 0.81 +0.2 823,605 - HMPREF1078_RS03485 0.81 +1.2 823,818 - +1.1 823,847 + +2.2 823,899 + +0.4 823,900 - +0.9 823,903 + +2.1 823,920 + -2.2 823,921 - -0.7 823,921 - +0.4 823,923 - -0.3 823,923 - +0.9 823,954 + -1.1 823,954 + -1.4 823,954 + +1.2 823,954 + +0.2 823,955 - -1.3 823,955 - -1.3 823,955 - -2.4 823,956 + +0.1 823,957 - +0.3 823,957 - +3.9 823,958 + -2.0 823,959 - -0.7 823,973 - +0.9 823,974 + -2.7 823,974 + -0.9 823,974 + -0.4 823,975 - -0.7 823,989 - +1.3 824,156 - HMPREF1078_RS03490 0.10 -1.1 824,226 + HMPREF1078_RS03490 0.18 -1.3 824,230 + HMPREF1078_RS03490 0.18 -0.2 824,230 + HMPREF1078_RS03490 0.18 -0.9 824,231 - HMPREF1078_RS03490 0.19 +0.3 824,231 - HMPREF1078_RS03490 0.19 +0.1 824,231 - HMPREF1078_RS03490 0.19 -1.1 824,317 - HMPREF1078_RS03490 0.28 +2.2 824,360 - HMPREF1078_RS03490 0.33 -2.0 824,428 - HMPREF1078_RS03490 0.40 -2.3 824,434 + HMPREF1078_RS03490 0.41 +0.7 824,435 - HMPREF1078_RS03490 0.41 -0.4 824,445 - HMPREF1078_RS03490 0.42 +1.1 824,449 + HMPREF1078_RS03490 0.43 +0.3 824,492 + HMPREF1078_RS03490 0.48 +0.1 824,493 - HMPREF1078_RS03490 0.48 -0.7 824,493 - HMPREF1078_RS03490 0.48 -0.4 824,493 - HMPREF1078_RS03490 0.48 +2.9 824,493 - HMPREF1078_RS03490 0.48 +0.8 824,493 - HMPREF1078_RS03490 0.48 -0.1 824,611 + HMPREF1078_RS03490 0.61 +2.5 824,612 - HMPREF1078_RS03490 0.61 +0.6 824,646 + HMPREF1078_RS03490 0.65 +0.0 824,647 - HMPREF1078_RS03490 0.65 -2.1 824,702 + HMPREF1078_RS03490 0.71 -1.5 824,702 + HMPREF1078_RS03490 0.71 -2.1 824,780 - HMPREF1078_RS03490 0.80 -2.1 824,780 - HMPREF1078_RS03490 0.80 -0.2 824,785 - HMPREF1078_RS03490 0.80 +0.3 824,802 + HMPREF1078_RS03490 0.82 +0.9 824,802 + HMPREF1078_RS03490 0.82 -0.1 824,802 + HMPREF1078_RS03490 0.82 -0.1 824,803 - HMPREF1078_RS03490 0.82 -0.8 824,804 + HMPREF1078_RS03490 0.82 -0.7 824,805 - HMPREF1078_RS03490 0.82 -0.9 824,805 - HMPREF1078_RS03490 0.82 -0.5 824,815 + HMPREF1078_RS03490 0.83 -1.4 824,824 + HMPREF1078_RS03490 0.84 -1.7 824,824 + HMPREF1078_RS03490 0.84 -1.1 824,903 + -1.6 824,907 + +1.3 824,907 + -2.3 824,907 + -0.7 824,907 + -1.2 824,907 + +1.9 824,907 + +0.9 824,907 + -0.1 824,908 - -2.1 824,908 - -1.0 824,908 - -2.3 824,924 + -0.2
Or see this region's nucleotide sequence