Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10945

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10935 and HMPREF1078_RS19900 overlap by 15 nucleotidesHMPREF1078_RS19900 and HMPREF1078_RS19905 are separated by 186 nucleotidesHMPREF1078_RS19905 and HMPREF1078_RS10945 are separated by 60 nucleotidesHMPREF1078_RS10945 and HMPREF1078_RS10950 overlap by 62 nucleotides HMPREF1078_RS10935: HMPREF1078_RS10935 - discoidin domain-containing protein, at 98,163 to 99,200 _RS10935 HMPREF1078_RS19900: HMPREF1078_RS19900 - AraC family ligand binding domain-containing protein, at 99,186 to 99,323 _RS19900 HMPREF1078_RS19905: HMPREF1078_RS19905 - AraC family transcriptional regulator, at 99,510 to 99,824 _RS19905 HMPREF1078_RS10945: HMPREF1078_RS10945 - glycoside hydrolase family 97 catalytic domain-containing protein, at 99,885 to 101,078 _RS10945 HMPREF1078_RS10950: HMPREF1078_RS10950 - glycoside hydrolase family 97 protein, at 101,017 to 103,017 _RS10950 Position (kb) 99 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.938 kb on + strand, within HMPREF1078_RS10935at 98.939 kb on - strand, within HMPREF1078_RS10935at 98.939 kb on - strand, within HMPREF1078_RS10935at 99.008 kb on + strand, within HMPREF1078_RS10935at 99.008 kb on + strand, within HMPREF1078_RS10935at 99.008 kb on + strand, within HMPREF1078_RS10935at 99.009 kb on - strand, within HMPREF1078_RS10935at 99.009 kb on - strand, within HMPREF1078_RS10935at 99.071 kb on + strand, within HMPREF1078_RS10935at 99.071 kb on + strand, within HMPREF1078_RS10935at 99.112 kb on + strandat 99.137 kb on - strandat 99.182 kb on + strandat 99.191 kb on - strandat 99.208 kb on - strand, within HMPREF1078_RS19900at 99.332 kb on - strandat 99.367 kb on + strandat 99.367 kb on + strandat 99.368 kb on - strandat 99.369 kb on + strandat 99.370 kb on - strandat 99.370 kb on - strandat 99.370 kb on - strandat 99.374 kb on + strandat 99.427 kb on + strandat 99.427 kb on + strandat 99.427 kb on + strandat 99.427 kb on + strandat 99.428 kb on - strandat 99.429 kb on + strandat 99.430 kb on - strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.431 kb on + strandat 99.432 kb on - strandat 99.610 kb on + strand, within HMPREF1078_RS19905at 99.610 kb on + strand, within HMPREF1078_RS19905at 99.629 kb on + strand, within HMPREF1078_RS19905at 99.651 kb on - strand, within HMPREF1078_RS19905at 99.681 kb on + strand, within HMPREF1078_RS19905at 99.682 kb on - strand, within HMPREF1078_RS19905at 99.682 kb on - strand, within HMPREF1078_RS19905at 99.693 kb on - strand, within HMPREF1078_RS19905at 99.823 kb on - strandat 99.827 kb on - strandat 99.863 kb on + strandat 99.929 kb on + strandat 100.018 kb on + strand, within HMPREF1078_RS10945at 100.018 kb on + strand, within HMPREF1078_RS10945at 100.019 kb on - strand, within HMPREF1078_RS10945at 100.021 kb on + strand, within HMPREF1078_RS10945at 100.107 kb on + strand, within HMPREF1078_RS10945at 100.111 kb on + strand, within HMPREF1078_RS10945at 100.112 kb on - strand, within HMPREF1078_RS10945at 100.112 kb on - strand, within HMPREF1078_RS10945at 100.147 kb on + strand, within HMPREF1078_RS10945at 100.147 kb on + strand, within HMPREF1078_RS10945at 100.148 kb on - strand, within HMPREF1078_RS10945at 100.148 kb on - strand, within HMPREF1078_RS10945at 100.205 kb on + strand, within HMPREF1078_RS10945at 100.300 kb on + strand, within HMPREF1078_RS10945at 100.301 kb on - strand, within HMPREF1078_RS10945at 100.319 kb on + strand, within HMPREF1078_RS10945at 100.319 kb on + strand, within HMPREF1078_RS10945at 100.320 kb on - strand, within HMPREF1078_RS10945at 100.321 kb on + strand, within HMPREF1078_RS10945at 100.325 kb on + strand, within HMPREF1078_RS10945at 100.325 kb on + strand, within HMPREF1078_RS10945at 100.325 kb on + strand, within HMPREF1078_RS10945at 100.326 kb on - strand, within HMPREF1078_RS10945at 100.326 kb on - strand, within HMPREF1078_RS10945at 100.326 kb on - strand, within HMPREF1078_RS10945at 100.326 kb on - strand, within HMPREF1078_RS10945at 100.400 kb on + strand, within HMPREF1078_RS10945at 100.401 kb on - strand, within HMPREF1078_RS10945at 100.430 kb on + strand, within HMPREF1078_RS10945at 100.439 kb on + strand, within HMPREF1078_RS10945at 100.439 kb on + strand, within HMPREF1078_RS10945at 100.441 kb on + strand, within HMPREF1078_RS10945at 100.442 kb on - strand, within HMPREF1078_RS10945at 100.510 kb on + strand, within HMPREF1078_RS10945at 100.558 kb on - strand, within HMPREF1078_RS10945at 100.607 kb on + strand, within HMPREF1078_RS10945at 100.672 kb on - strand, within HMPREF1078_RS10945at 100.720 kb on + strand, within HMPREF1078_RS10945at 100.721 kb on - strand, within HMPREF1078_RS10945at 100.753 kb on + strand, within HMPREF1078_RS10945at 100.753 kb on + strand, within HMPREF1078_RS10945at 100.754 kb on - strand, within HMPREF1078_RS10945at 100.759 kb on - strand, within HMPREF1078_RS10945at 100.759 kb on - strand, within HMPREF1078_RS10945at 100.873 kb on + strand, within HMPREF1078_RS10945at 100.874 kb on - strand, within HMPREF1078_RS10945at 100.908 kb on - strand, within HMPREF1078_RS10945at 100.914 kb on - strand, within HMPREF1078_RS10945at 100.935 kb on - strand, within HMPREF1078_RS10945at 101.004 kb on - strandat 101.008 kb on - strandat 101.015 kb on - strandat 101.015 kb on - strandat 101.015 kb on - strandat 101.018 kb on + strandat 101.097 kb on + strandat 101.145 kb on + strandat 101.241 kb on - strand, within HMPREF1078_RS10950at 101.241 kb on - strand, within HMPREF1078_RS10950at 101.275 kb on + strand, within HMPREF1078_RS10950at 101.276 kb on - strand, within HMPREF1078_RS10950at 101.347 kb on - strand, within HMPREF1078_RS10950at 101.349 kb on - strand, within HMPREF1078_RS10950at 101.349 kb on - strand, within HMPREF1078_RS10950at 101.430 kb on - strand, within HMPREF1078_RS10950at 101.441 kb on + strand, within HMPREF1078_RS10950at 101.463 kb on + strand, within HMPREF1078_RS10950at 101.491 kb on - strand, within HMPREF1078_RS10950at 101.551 kb on - strand, within HMPREF1078_RS10950at 101.551 kb on - strand, within HMPREF1078_RS10950at 101.551 kb on - strand, within HMPREF1078_RS10950at 101.608 kb on - strand, within HMPREF1078_RS10950at 101.638 kb on - strand, within HMPREF1078_RS10950at 101.864 kb on + strand, within HMPREF1078_RS10950at 101.891 kb on + strand, within HMPREF1078_RS10950at 102.027 kb on - strand, within HMPREF1078_RS10950

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5
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98,938 + HMPREF1078_RS10935 0.75 -0.1
98,938 + HMPREF1078_RS10935 0.75 -2.4
98,938 + HMPREF1078_RS10935 0.75 +1.1
98,938 + HMPREF1078_RS10935 0.75 -1.2
98,938 + HMPREF1078_RS10935 0.75 -0.1
98,939 - HMPREF1078_RS10935 0.75 -1.1
98,939 - HMPREF1078_RS10935 0.75 +0.8
99,008 + HMPREF1078_RS10935 0.81 +0.5
99,008 + HMPREF1078_RS10935 0.81 -2.5
99,008 + HMPREF1078_RS10935 0.81 +1.5
99,009 - HMPREF1078_RS10935 0.82 -2.1
99,009 - HMPREF1078_RS10935 0.82 -0.8
99,071 + HMPREF1078_RS10935 0.87 -1.8
99,071 + HMPREF1078_RS10935 0.87 +1.1
99,112 + -0.2
99,137 - -0.5
99,182 + -0.2
99,191 - +0.1
99,208 - HMPREF1078_RS19900 0.16 +1.2
99,332 - +1.2
99,367 + +0.4
99,367 + -1.3
99,368 - -0.8
99,369 + -0.3
99,370 - -0.8
99,370 - +0.4
99,370 - -0.5
99,374 + +0.2
99,427 + +0.1
99,427 + -1.0
99,427 + +0.3
99,427 + -1.4
99,428 - +2.8
99,429 + +0.3
99,430 - -1.0
99,431 + +3.4
99,431 + +0.1
99,431 + -1.4
99,431 + -0.9
99,431 + -1.3
99,431 + -1.0
99,431 + +0.4
99,432 - -2.4
99,610 + HMPREF1078_RS19905 0.32 -2.1
99,610 + HMPREF1078_RS19905 0.32 -0.4
99,629 + HMPREF1078_RS19905 0.38 -1.3
99,651 - HMPREF1078_RS19905 0.45 +1.8
99,681 + HMPREF1078_RS19905 0.54 -1.5
99,682 - HMPREF1078_RS19905 0.55 -2.4
99,682 - HMPREF1078_RS19905 0.55 -0.4
99,693 - HMPREF1078_RS19905 0.58 -2.3
99,823 - +0.4
99,827 - +0.8
99,863 + -0.4
99,929 + -0.2
100,018 + HMPREF1078_RS10945 0.11 -0.5
100,018 + HMPREF1078_RS10945 0.11 -0.9
100,019 - HMPREF1078_RS10945 0.11 -1.3
100,021 + HMPREF1078_RS10945 0.11 +1.1
100,107 + HMPREF1078_RS10945 0.19 -2.4
100,111 + HMPREF1078_RS10945 0.19 +0.1
100,112 - HMPREF1078_RS10945 0.19 +0.6
100,112 - HMPREF1078_RS10945 0.19 +0.3
100,147 + HMPREF1078_RS10945 0.22 -1.1
100,147 + HMPREF1078_RS10945 0.22 +0.2
100,148 - HMPREF1078_RS10945 0.22 -2.8
100,148 - HMPREF1078_RS10945 0.22 +0.1
100,205 + HMPREF1078_RS10945 0.27 +0.6
100,300 + HMPREF1078_RS10945 0.35 -0.9
100,301 - HMPREF1078_RS10945 0.35 +0.2
100,319 + HMPREF1078_RS10945 0.36 -0.6
100,319 + HMPREF1078_RS10945 0.36 -0.8
100,320 - HMPREF1078_RS10945 0.36 +0.3
100,321 + HMPREF1078_RS10945 0.37 +1.8
100,325 + HMPREF1078_RS10945 0.37 -2.2
100,325 + HMPREF1078_RS10945 0.37 -2.1
100,325 + HMPREF1078_RS10945 0.37 -0.3
100,326 - HMPREF1078_RS10945 0.37 -1.0
100,326 - HMPREF1078_RS10945 0.37 +0.8
100,326 - HMPREF1078_RS10945 0.37 -0.1
100,326 - HMPREF1078_RS10945 0.37 -1.6
100,400 + HMPREF1078_RS10945 0.43 +0.8
100,401 - HMPREF1078_RS10945 0.43 -0.3
100,430 + HMPREF1078_RS10945 0.46 -0.8
100,439 + HMPREF1078_RS10945 0.46 -1.1
100,439 + HMPREF1078_RS10945 0.46 +0.7
100,441 + HMPREF1078_RS10945 0.47 -0.3
100,442 - HMPREF1078_RS10945 0.47 -2.8
100,510 + HMPREF1078_RS10945 0.52 -0.9
100,558 - HMPREF1078_RS10945 0.56 +0.2
100,607 + HMPREF1078_RS10945 0.60 +0.5
100,672 - HMPREF1078_RS10945 0.66 -0.3
100,720 + HMPREF1078_RS10945 0.70 +0.8
100,721 - HMPREF1078_RS10945 0.70 -0.2
100,753 + HMPREF1078_RS10945 0.73 -0.9
100,753 + HMPREF1078_RS10945 0.73 +1.2
100,754 - HMPREF1078_RS10945 0.73 +0.7
100,759 - HMPREF1078_RS10945 0.73 -2.7
100,759 - HMPREF1078_RS10945 0.73 +0.2
100,873 + HMPREF1078_RS10945 0.83 -0.2
100,874 - HMPREF1078_RS10945 0.83 +0.8
100,908 - HMPREF1078_RS10945 0.86 -0.4
100,914 - HMPREF1078_RS10945 0.86 -1.4
100,935 - HMPREF1078_RS10945 0.88 +0.0
101,004 - -0.5
101,008 - -0.6
101,015 - -0.4
101,015 - -1.3
101,015 - -1.0
101,018 + -1.4
101,097 + -1.4
101,145 + -0.1
101,241 - HMPREF1078_RS10950 0.11 +0.1
101,241 - HMPREF1078_RS10950 0.11 -1.7
101,275 + HMPREF1078_RS10950 0.13 -0.1
101,276 - HMPREF1078_RS10950 0.13 -0.4
101,347 - HMPREF1078_RS10950 0.16 +0.6
101,349 - HMPREF1078_RS10950 0.17 +0.2
101,349 - HMPREF1078_RS10950 0.17 -0.9
101,430 - HMPREF1078_RS10950 0.21 +0.0
101,441 + HMPREF1078_RS10950 0.21 -1.0
101,463 + HMPREF1078_RS10950 0.22 +0.1
101,491 - HMPREF1078_RS10950 0.24 -0.9
101,551 - HMPREF1078_RS10950 0.27 -0.1
101,551 - HMPREF1078_RS10950 0.27 -0.4
101,551 - HMPREF1078_RS10950 0.27 -0.5
101,608 - HMPREF1078_RS10950 0.30 +0.2
101,638 - HMPREF1078_RS10950 0.31 +0.2
101,864 + HMPREF1078_RS10950 0.42 +0.0
101,891 + HMPREF1078_RS10950 0.44 -0.1
102,027 - HMPREF1078_RS10950 0.50 -0.2

Or see this region's nucleotide sequence