Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08060

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08050 and HMPREF1078_RS08055 are separated by 4 nucleotidesHMPREF1078_RS08055 and HMPREF1078_RS08060 are separated by 134 nucleotidesHMPREF1078_RS08060 and HMPREF1078_RS08065 are separated by 132 nucleotides HMPREF1078_RS08050: HMPREF1078_RS08050 - membrane protein, at 173,178 to 173,468 _RS08050 HMPREF1078_RS08055: HMPREF1078_RS08055 - glycine zipper family protein, at 173,473 to 174,135 _RS08055 HMPREF1078_RS08060: HMPREF1078_RS08060 - AAA domain-containing protein, at 174,270 to 176,189 _RS08060 HMPREF1078_RS08065: HMPREF1078_RS08065 - Cof-type HAD-IIB family hydrolase, at 176,322 to 177,554 _RS08065 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 173.309 kb on - strand, within HMPREF1078_RS08050at 173.316 kb on - strand, within HMPREF1078_RS08050at 173.356 kb on + strand, within HMPREF1078_RS08050at 173.356 kb on + strand, within HMPREF1078_RS08050at 173.356 kb on + strand, within HMPREF1078_RS08050at 173.357 kb on - strand, within HMPREF1078_RS08050at 173.357 kb on - strand, within HMPREF1078_RS08050at 173.357 kb on - strand, within HMPREF1078_RS08050at 173.395 kb on + strand, within HMPREF1078_RS08050at 173.401 kb on + strand, within HMPREF1078_RS08050at 173.408 kb on - strand, within HMPREF1078_RS08050at 173.413 kb on + strand, within HMPREF1078_RS08050at 173.414 kb on - strand, within HMPREF1078_RS08050at 173.414 kb on - strand, within HMPREF1078_RS08050at 173.414 kb on - strand, within HMPREF1078_RS08050at 173.414 kb on - strand, within HMPREF1078_RS08050at 173.422 kb on + strand, within HMPREF1078_RS08050at 173.502 kb on + strandat 173.598 kb on + strand, within HMPREF1078_RS08055at 173.605 kb on - strand, within HMPREF1078_RS08055at 173.606 kb on + strand, within HMPREF1078_RS08055at 173.606 kb on + strand, within HMPREF1078_RS08055at 173.606 kb on + strand, within HMPREF1078_RS08055at 173.607 kb on - strand, within HMPREF1078_RS08055at 173.607 kb on - strand, within HMPREF1078_RS08055at 173.614 kb on - strand, within HMPREF1078_RS08055at 173.639 kb on - strand, within HMPREF1078_RS08055at 173.746 kb on - strand, within HMPREF1078_RS08055at 173.767 kb on + strand, within HMPREF1078_RS08055at 173.808 kb on + strand, within HMPREF1078_RS08055at 173.808 kb on + strand, within HMPREF1078_RS08055at 173.854 kb on - strand, within HMPREF1078_RS08055at 173.855 kb on + strand, within HMPREF1078_RS08055at 173.856 kb on - strand, within HMPREF1078_RS08055at 173.856 kb on - strand, within HMPREF1078_RS08055at 173.856 kb on - strand, within HMPREF1078_RS08055at 173.885 kb on - strand, within HMPREF1078_RS08055at 173.898 kb on + strand, within HMPREF1078_RS08055at 173.898 kb on + strand, within HMPREF1078_RS08055at 173.898 kb on + strand, within HMPREF1078_RS08055at 174.066 kb on + strand, within HMPREF1078_RS08055at 174.109 kb on + strandat 174.118 kb on + strandat 174.118 kb on + strandat 174.237 kb on + strandat 174.238 kb on - strandat 174.316 kb on - strandat 174.316 kb on - strandat 174.357 kb on + strandat 174.358 kb on - strandat 174.417 kb on + strandat 174.441 kb on + strandat 174.442 kb on - strandat 174.491 kb on + strand, within HMPREF1078_RS08060at 174.595 kb on - strand, within HMPREF1078_RS08060at 174.598 kb on + strand, within HMPREF1078_RS08060at 174.620 kb on - strand, within HMPREF1078_RS08060at 174.623 kb on - strand, within HMPREF1078_RS08060at 174.635 kb on + strand, within HMPREF1078_RS08060at 174.646 kb on - strand, within HMPREF1078_RS08060at 174.651 kb on - strand, within HMPREF1078_RS08060at 174.652 kb on + strand, within HMPREF1078_RS08060at 174.703 kb on - strand, within HMPREF1078_RS08060at 174.757 kb on + strand, within HMPREF1078_RS08060at 174.868 kb on + strand, within HMPREF1078_RS08060at 174.868 kb on + strand, within HMPREF1078_RS08060at 174.868 kb on + strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.869 kb on - strand, within HMPREF1078_RS08060at 174.974 kb on - strand, within HMPREF1078_RS08060at 175.003 kb on + strand, within HMPREF1078_RS08060at 175.365 kb on - strand, within HMPREF1078_RS08060at 175.435 kb on + strand, within HMPREF1078_RS08060at 175.611 kb on + strand, within HMPREF1078_RS08060at 175.671 kb on - strand, within HMPREF1078_RS08060at 175.743 kb on - strand, within HMPREF1078_RS08060at 175.749 kb on - strand, within HMPREF1078_RS08060at 175.760 kb on + strand, within HMPREF1078_RS08060at 175.761 kb on - strand, within HMPREF1078_RS08060at 175.788 kb on + strand, within HMPREF1078_RS08060at 175.788 kb on + strand, within HMPREF1078_RS08060at 175.791 kb on - strand, within HMPREF1078_RS08060at 175.817 kb on - strand, within HMPREF1078_RS08060at 175.854 kb on + strand, within HMPREF1078_RS08060at 175.872 kb on + strand, within HMPREF1078_RS08060at 175.991 kb on - strand, within HMPREF1078_RS08060at 176.101 kb on + strandat 176.128 kb on + strandat 176.130 kb on + strandat 176.135 kb on - strandat 176.136 kb on + strandat 176.136 kb on + strandat 176.137 kb on - strandat 176.139 kb on - strandat 176.197 kb on - strandat 176.197 kb on - strandat 176.204 kb on + strandat 176.251 kb on - strandat 176.286 kb on + strandat 176.295 kb on - strandat 176.295 kb on - strandat 176.311 kb on - strandat 176.328 kb on + strandat 176.329 kb on - strandat 176.335 kb on + strandat 176.338 kb on + strandat 176.417 kb on - strandat 176.417 kb on - strandat 176.431 kb on + strandat 176.431 kb on + strandat 176.432 kb on - strandat 176.432 kb on - strandat 176.432 kb on - strandat 176.432 kb on - strandat 176.435 kb on + strandat 176.435 kb on + strandat 176.435 kb on + strandat 176.435 kb on + strandat 176.435 kb on + strandat 176.436 kb on - strandat 176.440 kb on + strandat 176.441 kb on - strandat 176.514 kb on + strand, within HMPREF1078_RS08065at 176.527 kb on - strand, within HMPREF1078_RS08065at 176.691 kb on + strand, within HMPREF1078_RS08065at 176.691 kb on + strand, within HMPREF1078_RS08065at 176.692 kb on - strand, within HMPREF1078_RS08065at 176.780 kb on + strand, within HMPREF1078_RS08065at 176.884 kb on + strand, within HMPREF1078_RS08065at 177.136 kb on + strand, within HMPREF1078_RS08065at 177.136 kb on + strand, within HMPREF1078_RS08065at 177.137 kb on - strand, within HMPREF1078_RS08065at 177.170 kb on + strand, within HMPREF1078_RS08065

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5
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173,309 - HMPREF1078_RS08050 0.45 -1.0
173,316 - HMPREF1078_RS08050 0.47 -0.0
173,356 + HMPREF1078_RS08050 0.61 -1.4
173,356 + HMPREF1078_RS08050 0.61 +0.2
173,356 + HMPREF1078_RS08050 0.61 -1.4
173,357 - HMPREF1078_RS08050 0.62 +3.0
173,357 - HMPREF1078_RS08050 0.62 +0.2
173,357 - HMPREF1078_RS08050 0.62 -1.3
173,395 + HMPREF1078_RS08050 0.75 -2.2
173,401 + HMPREF1078_RS08050 0.77 -1.2
173,408 - HMPREF1078_RS08050 0.79 -0.9
173,413 + HMPREF1078_RS08050 0.81 -0.8
173,414 - HMPREF1078_RS08050 0.81 -0.4
173,414 - HMPREF1078_RS08050 0.81 -1.4
173,414 - HMPREF1078_RS08050 0.81 -1.2
173,414 - HMPREF1078_RS08050 0.81 +0.8
173,422 + HMPREF1078_RS08050 0.84 -0.9
173,502 + -0.7
173,598 + HMPREF1078_RS08055 0.19 -0.4
173,605 - HMPREF1078_RS08055 0.20 +1.0
173,606 + HMPREF1078_RS08055 0.20 +1.4
173,606 + HMPREF1078_RS08055 0.20 +1.2
173,606 + HMPREF1078_RS08055 0.20 -0.6
173,607 - HMPREF1078_RS08055 0.20 +1.0
173,607 - HMPREF1078_RS08055 0.20 +0.6
173,614 - HMPREF1078_RS08055 0.21 -0.0
173,639 - HMPREF1078_RS08055 0.25 +1.5
173,746 - HMPREF1078_RS08055 0.41 +0.4
173,767 + HMPREF1078_RS08055 0.44 +1.0
173,808 + HMPREF1078_RS08055 0.51 +0.5
173,808 + HMPREF1078_RS08055 0.51 -1.0
173,854 - HMPREF1078_RS08055 0.57 -1.9
173,855 + HMPREF1078_RS08055 0.58 -0.3
173,856 - HMPREF1078_RS08055 0.58 -1.4
173,856 - HMPREF1078_RS08055 0.58 +2.0
173,856 - HMPREF1078_RS08055 0.58 +0.1
173,885 - HMPREF1078_RS08055 0.62 -0.4
173,898 + HMPREF1078_RS08055 0.64 +2.0
173,898 + HMPREF1078_RS08055 0.64 +1.5
173,898 + HMPREF1078_RS08055 0.64 -1.0
174,066 + HMPREF1078_RS08055 0.89 +0.2
174,109 + +0.5
174,118 + +0.5
174,118 + +2.0
174,237 + +3.0
174,238 - +0.9
174,316 - -0.6
174,316 - -0.0
174,357 + -0.6
174,358 - -0.0
174,417 + -0.6
174,441 + -0.0
174,442 - +1.6
174,491 + HMPREF1078_RS08060 0.12 +0.4
174,595 - HMPREF1078_RS08060 0.17 +1.4
174,598 + HMPREF1078_RS08060 0.17 -1.7
174,620 - HMPREF1078_RS08060 0.18 +0.3
174,623 - HMPREF1078_RS08060 0.18 +1.6
174,635 + HMPREF1078_RS08060 0.19 -2.9
174,646 - HMPREF1078_RS08060 0.20 -0.6
174,651 - HMPREF1078_RS08060 0.20 -1.2
174,652 + HMPREF1078_RS08060 0.20 +2.0
174,703 - HMPREF1078_RS08060 0.23 +1.4
174,757 + HMPREF1078_RS08060 0.25 -1.7
174,868 + HMPREF1078_RS08060 0.31 -1.3
174,868 + HMPREF1078_RS08060 0.31 -1.2
174,868 + HMPREF1078_RS08060 0.31 +0.4
174,869 - HMPREF1078_RS08060 0.31 -0.9
174,869 - HMPREF1078_RS08060 0.31 -0.9
174,869 - HMPREF1078_RS08060 0.31 -0.6
174,869 - HMPREF1078_RS08060 0.31 +1.0
174,869 - HMPREF1078_RS08060 0.31 +1.0
174,869 - HMPREF1078_RS08060 0.31 +0.7
174,869 - HMPREF1078_RS08060 0.31 +1.0
174,974 - HMPREF1078_RS08060 0.37 -1.4
175,003 + HMPREF1078_RS08060 0.38 +0.2
175,365 - HMPREF1078_RS08060 0.57 -0.2
175,435 + HMPREF1078_RS08060 0.61 +2.0
175,611 + HMPREF1078_RS08060 0.70 -0.0
175,671 - HMPREF1078_RS08060 0.73 +0.4
175,743 - HMPREF1078_RS08060 0.77 +0.1
175,749 - HMPREF1078_RS08060 0.77 -0.9
175,760 + HMPREF1078_RS08060 0.78 -0.6
175,761 - HMPREF1078_RS08060 0.78 -0.0
175,788 + HMPREF1078_RS08060 0.79 -1.9
175,788 + HMPREF1078_RS08060 0.79 +3.0
175,791 - HMPREF1078_RS08060 0.79 -1.0
175,817 - HMPREF1078_RS08060 0.81 -1.6
175,854 + HMPREF1078_RS08060 0.82 -1.4
175,872 + HMPREF1078_RS08060 0.83 +1.0
175,991 - HMPREF1078_RS08060 0.90 -1.9
176,101 + +0.0
176,128 + +2.0
176,130 + -0.4
176,135 - +1.0
176,136 + -0.3
176,136 + -0.9
176,137 - +1.0
176,139 - +0.4
176,197 - -0.9
176,197 - +1.0
176,204 + -0.6
176,251 - +0.6
176,286 + +0.4
176,295 - +1.4
176,295 - -2.0
176,311 - +0.2
176,328 + -1.2
176,329 - -1.0
176,335 + -1.2
176,338 + -1.4
176,417 - +0.5
176,417 - -1.5
176,431 + +1.5
176,431 + -1.0
176,432 - +1.0
176,432 - -1.0
176,432 - +1.1
176,432 - +1.0
176,435 + +1.4
176,435 + -0.9
176,435 + +3.7
176,435 + +0.3
176,435 + +0.4
176,436 - +0.5
176,440 + -1.2
176,441 - -0.0
176,514 + HMPREF1078_RS08065 0.16 -1.9
176,527 - HMPREF1078_RS08065 0.17 +2.0
176,691 + HMPREF1078_RS08065 0.30 -1.5
176,691 + HMPREF1078_RS08065 0.30 -1.7
176,692 - HMPREF1078_RS08065 0.30 +1.3
176,780 + HMPREF1078_RS08065 0.37 +0.1
176,884 + HMPREF1078_RS08065 0.46 -1.3
177,136 + HMPREF1078_RS08065 0.66 -1.4
177,136 + HMPREF1078_RS08065 0.66 -2.0
177,137 - HMPREF1078_RS08065 0.66 -0.9
177,170 + HMPREF1078_RS08065 0.69 -0.5

Or see this region's nucleotide sequence