Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04200 and HMPREF1078_RS04205 are separated by 4 nucleotides HMPREF1078_RS04205 and HMPREF1078_RS04210 are separated by 275 nucleotides HMPREF1078_RS04210 and HMPREF1078_RS04215 are separated by 2 nucleotides
HMPREF1078_RS04200: HMPREF1078_RS04200 - alkyl hydroperoxide reductase subunit F, at 59,125 to 60,690
_RS04200
HMPREF1078_RS04205: HMPREF1078_RS04205 - alkyl hydroperoxide reductase subunit C, at 60,695 to 61,261
_RS04205
HMPREF1078_RS04210: HMPREF1078_RS04210 - DUF4884 domain-containing protein, at 61,537 to 61,842
_RS04210
HMPREF1078_RS04215: HMPREF1078_RS04215 - pyruvate formate-lyase-activating protein, at 61,845 to 62,567
_RS04215
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 59.767 kb on - strand, within HMPREF1078_RS04200 at 59.808 kb on + strand, within HMPREF1078_RS04200 at 59.830 kb on + strand, within HMPREF1078_RS04200 at 59.830 kb on + strand, within HMPREF1078_RS04200 at 59.831 kb on - strand, within HMPREF1078_RS04200 at 59.831 kb on - strand, within HMPREF1078_RS04200 at 59.854 kb on - strand, within HMPREF1078_RS04200 at 59.854 kb on - strand, within HMPREF1078_RS04200 at 59.854 kb on - strand, within HMPREF1078_RS04200 at 59.949 kb on + strand, within HMPREF1078_RS04200 at 59.998 kb on - strand, within HMPREF1078_RS04200 at 60.031 kb on + strand, within HMPREF1078_RS04200 at 60.035 kb on - strand, within HMPREF1078_RS04200 at 60.324 kb on - strand, within HMPREF1078_RS04200 at 60.435 kb on + strand, within HMPREF1078_RS04200 at 60.484 kb on - strand, within HMPREF1078_RS04200 at 60.580 kb on + strand at 60.581 kb on - strand at 60.616 kb on + strand at 60.616 kb on + strand at 60.617 kb on - strand at 60.617 kb on - strand at 60.619 kb on - strand at 60.629 kb on + strand at 60.630 kb on - strand at 60.630 kb on - strand at 60.630 kb on - strand at 60.630 kb on - strand at 60.630 kb on - strand at 60.696 kb on + strand at 60.703 kb on + strand at 60.718 kb on + strand at 61.010 kb on + strand, within HMPREF1078_RS04205 at 61.026 kb on - strand, within HMPREF1078_RS04205 at 61.026 kb on - strand, within HMPREF1078_RS04205 at 61.026 kb on - strand, within HMPREF1078_RS04205 at 61.042 kb on + strand, within HMPREF1078_RS04205 at 61.043 kb on - strand, within HMPREF1078_RS04205 at 61.054 kb on - strand, within HMPREF1078_RS04205 at 61.055 kb on + strand, within HMPREF1078_RS04205 at 61.086 kb on + strand, within HMPREF1078_RS04205 at 61.086 kb on + strand, within HMPREF1078_RS04205 at 61.121 kb on + strand, within HMPREF1078_RS04205 at 61.121 kb on + strand, within HMPREF1078_RS04205 at 61.121 kb on + strand, within HMPREF1078_RS04205 at 61.122 kb on - strand, within HMPREF1078_RS04205 at 61.122 kb on - strand, within HMPREF1078_RS04205 at 61.129 kb on + strand, within HMPREF1078_RS04205 at 61.130 kb on - strand, within HMPREF1078_RS04205 at 61.144 kb on - strand, within HMPREF1078_RS04205 at 61.175 kb on - strand, within HMPREF1078_RS04205 at 61.183 kb on + strand, within HMPREF1078_RS04205 at 61.249 kb on + strand at 61.250 kb on - strand at 61.276 kb on - strand at 61.276 kb on - strand at 61.289 kb on + strand at 61.290 kb on - strand at 61.299 kb on + strand at 61.312 kb on + strand at 61.313 kb on - strand at 61.313 kb on - strand at 61.319 kb on + strand at 61.324 kb on + strand at 61.397 kb on + strand at 61.397 kb on + strand at 61.398 kb on - strand at 61.398 kb on - strand at 61.398 kb on - strand at 61.398 kb on - strand at 61.398 kb on - strand at 61.401 kb on + strand at 61.402 kb on - strand at 61.412 kb on + strand at 61.454 kb on + strand at 61.454 kb on + strand at 61.454 kb on + strand at 61.454 kb on + strand at 61.454 kb on + strand at 61.454 kb on + strand at 61.455 kb on - strand at 61.455 kb on - strand at 61.455 kb on - strand at 61.464 kb on + strand at 61.465 kb on - strand at 61.517 kb on + strand at 61.548 kb on + strand at 61.555 kb on + strand at 61.556 kb on - strand at 61.556 kb on - strand at 61.556 kb on - strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.561 kb on - strand at 61.561 kb on - strand at 61.561 kb on - strand at 61.578 kb on - strand, within HMPREF1078_RS04210 at 61.629 kb on + strand, within HMPREF1078_RS04210 at 61.629 kb on + strand, within HMPREF1078_RS04210 at 61.630 kb on - strand, within HMPREF1078_RS04210 at 61.660 kb on + strand, within HMPREF1078_RS04210 at 61.661 kb on - strand, within HMPREF1078_RS04210 at 61.695 kb on + strand, within HMPREF1078_RS04210 at 61.696 kb on - strand, within HMPREF1078_RS04210 at 61.726 kb on + strand, within HMPREF1078_RS04210 at 61.726 kb on + strand, within HMPREF1078_RS04210 at 61.726 kb on + strand, within HMPREF1078_RS04210 at 61.726 kb on + strand, within HMPREF1078_RS04210 at 61.726 kb on + strand, within HMPREF1078_RS04210 at 61.727 kb on - strand, within HMPREF1078_RS04210 at 61.727 kb on - strand, within HMPREF1078_RS04210 at 61.732 kb on + strand, within HMPREF1078_RS04210 at 61.759 kb on - strand, within HMPREF1078_RS04210 at 61.764 kb on + strand, within HMPREF1078_RS04210 at 61.840 kb on + strand at 61.847 kb on - strand at 61.869 kb on - strand at 61.928 kb on + strand, within HMPREF1078_RS04215 at 61.930 kb on + strand, within HMPREF1078_RS04215 at 61.970 kb on + strand, within HMPREF1078_RS04215 at 61.970 kb on + strand, within HMPREF1078_RS04215 at 61.971 kb on - strand, within HMPREF1078_RS04215 at 61.975 kb on + strand, within HMPREF1078_RS04215 at 62.006 kb on + strand, within HMPREF1078_RS04215 at 62.017 kb on - strand, within HMPREF1078_RS04215 at 62.018 kb on + strand, within HMPREF1078_RS04215 at 62.018 kb on + strand, within HMPREF1078_RS04215 at 62.019 kb on - strand, within HMPREF1078_RS04215 at 62.019 kb on - strand, within HMPREF1078_RS04215 at 62.019 kb on - strand, within HMPREF1078_RS04215 at 62.020 kb on + strand, within HMPREF1078_RS04215 at 62.020 kb on + strand, within HMPREF1078_RS04215 at 62.127 kb on + strand, within HMPREF1078_RS04215 at 62.146 kb on - strand, within HMPREF1078_RS04215 at 62.190 kb on - strand, within HMPREF1078_RS04215 at 62.193 kb on + strand, within HMPREF1078_RS04215 at 62.194 kb on - strand, within HMPREF1078_RS04215 at 62.246 kb on + strand, within HMPREF1078_RS04215 at 62.246 kb on + strand, within HMPREF1078_RS04215 at 62.247 kb on - strand, within HMPREF1078_RS04215 at 62.247 kb on - strand, within HMPREF1078_RS04215 at 62.247 kb on - strand, within HMPREF1078_RS04215 at 62.247 kb on - strand, within HMPREF1078_RS04215 at 62.248 kb on + strand, within HMPREF1078_RS04215 at 62.249 kb on - strand, within HMPREF1078_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 remove 59,767 - HMPREF1078_RS04200 0.41 -0.2 59,808 + HMPREF1078_RS04200 0.44 -0.2 59,830 + HMPREF1078_RS04200 0.45 +0.8 59,830 + HMPREF1078_RS04200 0.45 +1.4 59,831 - HMPREF1078_RS04200 0.45 -1.3 59,831 - HMPREF1078_RS04200 0.45 +1.9 59,854 - HMPREF1078_RS04200 0.47 -1.1 59,854 - HMPREF1078_RS04200 0.47 -0.0 59,854 - HMPREF1078_RS04200 0.47 -1.3 59,949 + HMPREF1078_RS04200 0.53 +1.2 59,998 - HMPREF1078_RS04200 0.56 +0.6 60,031 + HMPREF1078_RS04200 0.58 -2.7 60,035 - HMPREF1078_RS04200 0.58 -0.2 60,324 - HMPREF1078_RS04200 0.77 +1.2 60,435 + HMPREF1078_RS04200 0.84 +0.8 60,484 - HMPREF1078_RS04200 0.87 +0.2 60,580 + -1.1 60,581 - +0.2 60,616 + +0.6 60,616 + -0.1 60,617 - +0.6 60,617 - -1.5 60,619 - -0.5 60,629 + +0.6 60,630 - -1.9 60,630 - -0.6 60,630 - +0.1 60,630 - -2.7 60,630 - -0.7 60,696 + +1.4 60,703 + +1.0 60,718 + +1.0 61,010 + HMPREF1078_RS04205 0.56 +0.5 61,026 - HMPREF1078_RS04205 0.58 -1.5 61,026 - HMPREF1078_RS04205 0.58 -0.0 61,026 - HMPREF1078_RS04205 0.58 +0.4 61,042 + HMPREF1078_RS04205 0.61 -1.2 61,043 - HMPREF1078_RS04205 0.61 +0.8 61,054 - HMPREF1078_RS04205 0.63 +0.9 61,055 + HMPREF1078_RS04205 0.63 +1.2 61,086 + HMPREF1078_RS04205 0.69 +1.2 61,086 + HMPREF1078_RS04205 0.69 +0.8 61,121 + HMPREF1078_RS04205 0.75 -1.2 61,121 + HMPREF1078_RS04205 0.75 +0.1 61,121 + HMPREF1078_RS04205 0.75 +1.2 61,122 - HMPREF1078_RS04205 0.75 -0.4 61,122 - HMPREF1078_RS04205 0.75 -0.4 61,129 + HMPREF1078_RS04205 0.77 -1.0 61,130 - HMPREF1078_RS04205 0.77 -0.8 61,144 - HMPREF1078_RS04205 0.79 -1.4 61,175 - HMPREF1078_RS04205 0.85 -0.7 61,183 + HMPREF1078_RS04205 0.86 +1.2 61,249 + +1.4 61,250 - -1.7 61,276 - -1.8 61,276 - +0.8 61,289 + -0.3 61,290 - -0.4 61,299 + +0.6 61,312 + +0.5 61,313 - -0.6 61,313 - -1.3 61,319 + -0.1 61,324 + -1.0 61,397 + +1.8 61,397 + -0.2 61,398 - +0.1 61,398 - +0.2 61,398 - -1.1 61,398 - -0.2 61,398 - -2.0 61,401 + +0.3 61,402 - +1.2 61,412 + -0.0 61,454 + -0.0 61,454 + -0.6 61,454 + +2.0 61,454 + +1.0 61,454 + +0.2 61,454 + -0.2 61,455 - +1.2 61,455 - -0.7 61,455 - -1.8 61,464 + -3.3 61,465 - -0.2 61,517 + -1.9 61,548 + +0.5 61,555 + -0.3 61,556 - +0.7 61,556 - -1.3 61,556 - -3.2 61,557 + +0.6 61,557 + +0.2 61,557 + -0.4 61,561 - +0.6 61,561 - +0.6 61,561 - -0.3 61,578 - HMPREF1078_RS04210 0.13 -2.5 61,629 + HMPREF1078_RS04210 0.30 +0.6 61,629 + HMPREF1078_RS04210 0.30 +1.3 61,630 - HMPREF1078_RS04210 0.30 -1.1 61,660 + HMPREF1078_RS04210 0.40 -1.2 61,661 - HMPREF1078_RS04210 0.41 +1.0 61,695 + HMPREF1078_RS04210 0.52 -1.0 61,696 - HMPREF1078_RS04210 0.52 +0.2 61,726 + HMPREF1078_RS04210 0.62 -0.3 61,726 + HMPREF1078_RS04210 0.62 +0.4 61,726 + HMPREF1078_RS04210 0.62 -1.2 61,726 + HMPREF1078_RS04210 0.62 -0.8 61,726 + HMPREF1078_RS04210 0.62 -0.2 61,727 - HMPREF1078_RS04210 0.62 +2.2 61,727 - HMPREF1078_RS04210 0.62 +0.8 61,732 + HMPREF1078_RS04210 0.64 +1.4 61,759 - HMPREF1078_RS04210 0.73 -1.7 61,764 + HMPREF1078_RS04210 0.74 -0.4 61,840 + -0.6 61,847 - -2.1 61,869 - -0.3 61,928 + HMPREF1078_RS04215 0.11 -1.6 61,930 + HMPREF1078_RS04215 0.12 +0.1 61,970 + HMPREF1078_RS04215 0.17 -1.1 61,970 + HMPREF1078_RS04215 0.17 +3.2 61,971 - HMPREF1078_RS04215 0.17 -2.2 61,975 + HMPREF1078_RS04215 0.18 -0.7 62,006 + HMPREF1078_RS04215 0.22 +0.7 62,017 - HMPREF1078_RS04215 0.24 -0.4 62,018 + HMPREF1078_RS04215 0.24 -0.1 62,018 + HMPREF1078_RS04215 0.24 +2.2 62,019 - HMPREF1078_RS04215 0.24 -0.2 62,019 - HMPREF1078_RS04215 0.24 -0.4 62,019 - HMPREF1078_RS04215 0.24 -0.0 62,020 + HMPREF1078_RS04215 0.24 -0.9 62,020 + HMPREF1078_RS04215 0.24 -0.9 62,127 + HMPREF1078_RS04215 0.39 -0.4 62,146 - HMPREF1078_RS04215 0.42 -0.7 62,190 - HMPREF1078_RS04215 0.48 +0.9 62,193 + HMPREF1078_RS04215 0.48 +0.4 62,194 - HMPREF1078_RS04215 0.48 -0.2 62,246 + HMPREF1078_RS04215 0.55 -2.5 62,246 + HMPREF1078_RS04215 0.55 +0.3 62,247 - HMPREF1078_RS04215 0.56 +1.2 62,247 - HMPREF1078_RS04215 0.56 -1.4 62,247 - HMPREF1078_RS04215 0.56 -0.9 62,247 - HMPREF1078_RS04215 0.56 +4.2 62,248 + HMPREF1078_RS04215 0.56 -1.4 62,249 - HMPREF1078_RS04215 0.56 -1.3
Or see this region's nucleotide sequence