Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01815 and HMPREF1078_RS01820 are separated by 83 nucleotides HMPREF1078_RS01820 and HMPREF1078_RS01825 overlap by 8 nucleotides HMPREF1078_RS01825 and HMPREF1078_RS01830 are separated by 158 nucleotides
HMPREF1078_RS01815: HMPREF1078_RS01815 - 30S ribosomal protein S12 methylthiotransferase RimO, at 453,498 to 454,793
_RS01815
HMPREF1078_RS01820: HMPREF1078_RS01820 - HU family DNA-binding protein, at 454,877 to 455,167
_RS01820
HMPREF1078_RS01825: HMPREF1078_RS01825 - HU family DNA-binding protein, at 455,160 to 456,314
_RS01825
HMPREF1078_RS01830: HMPREF1078_RS01830 - MoxR family ATPase, at 456,473 to 457,468
_RS01830
Position (kb) 455
456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.170 kb on + strand, within HMPREF1078_RS01815 at 454.171 kb on - strand, within HMPREF1078_RS01815 at 454.176 kb on + strand, within HMPREF1078_RS01815 at 454.239 kb on + strand, within HMPREF1078_RS01815 at 454.240 kb on - strand, within HMPREF1078_RS01815 at 454.240 kb on - strand, within HMPREF1078_RS01815 at 454.240 kb on - strand, within HMPREF1078_RS01815 at 454.263 kb on - strand, within HMPREF1078_RS01815 at 454.317 kb on + strand, within HMPREF1078_RS01815 at 454.317 kb on + strand, within HMPREF1078_RS01815 at 454.318 kb on - strand, within HMPREF1078_RS01815 at 454.318 kb on - strand, within HMPREF1078_RS01815 at 454.318 kb on - strand, within HMPREF1078_RS01815 at 454.454 kb on + strand, within HMPREF1078_RS01815 at 454.470 kb on + strand, within HMPREF1078_RS01815 at 454.471 kb on - strand, within HMPREF1078_RS01815 at 454.491 kb on + strand, within HMPREF1078_RS01815 at 454.492 kb on - strand, within HMPREF1078_RS01815 at 454.492 kb on - strand, within HMPREF1078_RS01815 at 454.506 kb on + strand, within HMPREF1078_RS01815 at 454.506 kb on + strand, within HMPREF1078_RS01815 at 454.507 kb on - strand, within HMPREF1078_RS01815 at 454.562 kb on + strand, within HMPREF1078_RS01815 at 454.564 kb on + strand, within HMPREF1078_RS01815 at 454.564 kb on + strand, within HMPREF1078_RS01815 at 454.565 kb on - strand, within HMPREF1078_RS01815 at 454.612 kb on + strand, within HMPREF1078_RS01815 at 454.612 kb on + strand, within HMPREF1078_RS01815 at 454.612 kb on + strand, within HMPREF1078_RS01815 at 454.613 kb on - strand, within HMPREF1078_RS01815 at 454.613 kb on - strand, within HMPREF1078_RS01815 at 454.737 kb on + strand at 454.787 kb on - strand at 454.791 kb on + strand at 454.801 kb on + strand at 454.802 kb on - strand at 454.843 kb on - strand at 454.843 kb on - strand at 454.845 kb on + strand at 454.846 kb on - strand at 454.847 kb on + strand at 454.847 kb on + strand at 454.847 kb on + strand at 454.847 kb on + strand at 454.856 kb on - strand at 454.856 kb on - strand at 454.856 kb on - strand at 454.860 kb on + strand at 454.860 kb on + strand at 454.860 kb on + strand at 454.861 kb on - strand at 454.915 kb on + strand, within HMPREF1078_RS01820 at 455.000 kb on + strand, within HMPREF1078_RS01820 at 455.001 kb on + strand, within HMPREF1078_RS01820 at 455.001 kb on + strand, within HMPREF1078_RS01820 at 455.002 kb on - strand, within HMPREF1078_RS01820 at 455.002 kb on - strand, within HMPREF1078_RS01820 at 455.002 kb on - strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.003 kb on + strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.004 kb on - strand, within HMPREF1078_RS01820 at 455.082 kb on - strand, within HMPREF1078_RS01820 at 455.086 kb on - strand, within HMPREF1078_RS01820 at 455.142 kb on + strand at 455.143 kb on - strand at 455.152 kb on - strand at 455.152 kb on - strand at 455.165 kb on + strand at 455.166 kb on - strand at 455.209 kb on - strand at 455.210 kb on + strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.211 kb on - strand at 455.216 kb on + strand at 455.217 kb on - strand at 455.217 kb on - strand at 455.228 kb on + strand at 455.229 kb on - strand at 455.229 kb on - strand at 455.280 kb on + strand, within HMPREF1078_RS01825 at 455.281 kb on - strand, within HMPREF1078_RS01825 at 455.281 kb on - strand, within HMPREF1078_RS01825 at 455.288 kb on + strand, within HMPREF1078_RS01825 at 455.289 kb on - strand, within HMPREF1078_RS01825 at 455.322 kb on - strand, within HMPREF1078_RS01825 at 455.322 kb on - strand, within HMPREF1078_RS01825 at 455.363 kb on + strand, within HMPREF1078_RS01825 at 455.394 kb on + strand, within HMPREF1078_RS01825 at 455.394 kb on + strand, within HMPREF1078_RS01825 at 455.395 kb on - strand, within HMPREF1078_RS01825 at 455.395 kb on - strand, within HMPREF1078_RS01825 at 455.441 kb on + strand, within HMPREF1078_RS01825 at 455.442 kb on - strand, within HMPREF1078_RS01825 at 455.493 kb on - strand, within HMPREF1078_RS01825 at 455.499 kb on - strand, within HMPREF1078_RS01825 at 455.527 kb on + strand, within HMPREF1078_RS01825 at 455.528 kb on - strand, within HMPREF1078_RS01825 at 455.700 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.844 kb on - strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.124 kb on - strand, within HMPREF1078_RS01825 at 456.147 kb on + strand, within HMPREF1078_RS01825 at 456.148 kb on - strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.159 kb on + strand, within HMPREF1078_RS01825 at 456.159 kb on + strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.164 kb on + strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.295 kb on + strand at 456.296 kb on - strand at 456.312 kb on + strand at 456.366 kb on - strand at 456.402 kb on + strand at 456.455 kb on + strand at 456.457 kb on + strand at 456.544 kb on + strand at 456.564 kb on + strand at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.761 kb on + strand, within HMPREF1078_RS01830 at 456.914 kb on + strand, within HMPREF1078_RS01830 at 456.914 kb on + strand, within HMPREF1078_RS01830 at 456.999 kb on + strand, within HMPREF1078_RS01830 at 457.072 kb on + strand, within HMPREF1078_RS01830 at 457.135 kb on + strand, within HMPREF1078_RS01830 at 457.185 kb on + strand, within HMPREF1078_RS01830 at 457.185 kb on + strand, within HMPREF1078_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 remove 454,170 + HMPREF1078_RS01815 0.52 +0.3 454,171 - HMPREF1078_RS01815 0.52 -0.7 454,176 + HMPREF1078_RS01815 0.52 -0.9 454,239 + HMPREF1078_RS01815 0.57 +2.3 454,240 - HMPREF1078_RS01815 0.57 +0.5 454,240 - HMPREF1078_RS01815 0.57 +0.7 454,240 - HMPREF1078_RS01815 0.57 +1.3 454,263 - HMPREF1078_RS01815 0.59 -0.3 454,317 + HMPREF1078_RS01815 0.63 -0.5 454,317 + HMPREF1078_RS01815 0.63 +2.3 454,318 - HMPREF1078_RS01815 0.63 -0.3 454,318 - HMPREF1078_RS01815 0.63 -0.9 454,318 - HMPREF1078_RS01815 0.63 +0.3 454,454 + HMPREF1078_RS01815 0.74 -0.1 454,470 + HMPREF1078_RS01815 0.75 +1.3 454,471 - HMPREF1078_RS01815 0.75 +0.7 454,491 + HMPREF1078_RS01815 0.77 +1.3 454,492 - HMPREF1078_RS01815 0.77 -0.0 454,492 - HMPREF1078_RS01815 0.77 +0.3 454,506 + HMPREF1078_RS01815 0.78 -0.3 454,506 + HMPREF1078_RS01815 0.78 +0.7 454,507 - HMPREF1078_RS01815 0.78 -0.3 454,562 + HMPREF1078_RS01815 0.82 +0.7 454,564 + HMPREF1078_RS01815 0.82 -1.1 454,564 + HMPREF1078_RS01815 0.82 +1.3 454,565 - HMPREF1078_RS01815 0.82 +0.4 454,612 + HMPREF1078_RS01815 0.86 -0.9 454,612 + HMPREF1078_RS01815 0.86 +0.7 454,612 + HMPREF1078_RS01815 0.86 +0.5 454,613 - HMPREF1078_RS01815 0.86 -1.4 454,613 - HMPREF1078_RS01815 0.86 -0.0 454,737 + -0.9 454,787 - -0.9 454,791 + -2.4 454,801 + +0.1 454,802 - -0.5 454,843 - +0.7 454,843 - -1.5 454,845 + -1.2 454,846 - -0.3 454,847 + -1.6 454,847 + -0.0 454,847 + -1.3 454,847 + -0.5 454,856 - -0.0 454,856 - -1.2 454,856 - +1.4 454,860 + -1.4 454,860 + -1.7 454,860 + -2.2 454,861 - -0.1 454,915 + HMPREF1078_RS01820 0.13 -0.0 455,000 + HMPREF1078_RS01820 0.42 -2.2 455,001 + HMPREF1078_RS01820 0.43 -0.5 455,001 + HMPREF1078_RS01820 0.43 -2.3 455,002 - HMPREF1078_RS01820 0.43 -1.9 455,002 - HMPREF1078_RS01820 0.43 -1.5 455,002 - HMPREF1078_RS01820 0.43 +0.7 455,003 + HMPREF1078_RS01820 0.43 -0.5 455,003 + HMPREF1078_RS01820 0.43 -0.7 455,003 + HMPREF1078_RS01820 0.43 -1.1 455,003 + HMPREF1078_RS01820 0.43 -0.4 455,003 + HMPREF1078_RS01820 0.43 -2.2 455,004 - HMPREF1078_RS01820 0.44 +0.7 455,004 - HMPREF1078_RS01820 0.44 -1.5 455,004 - HMPREF1078_RS01820 0.44 -0.0 455,004 - HMPREF1078_RS01820 0.44 +0.4 455,082 - HMPREF1078_RS01820 0.70 -0.7 455,086 - HMPREF1078_RS01820 0.72 -2.0 455,142 + -2.2 455,143 - -1.4 455,152 - +0.7 455,152 - +0.7 455,165 + +1.3 455,166 - -1.0 455,209 - +0.7 455,210 + -0.2 455,211 - +0.7 455,211 - -1.0 455,211 - -0.5 455,211 - -1.8 455,211 - +0.3 455,216 + +0.3 455,217 - -1.6 455,217 - +0.5 455,228 + -2.5 455,229 - +0.7 455,229 - +1.6 455,280 + HMPREF1078_RS01825 0.10 +0.7 455,281 - HMPREF1078_RS01825 0.10 -0.5 455,281 - HMPREF1078_RS01825 0.10 +1.1 455,288 + HMPREF1078_RS01825 0.11 +0.7 455,289 - HMPREF1078_RS01825 0.11 +0.5 455,322 - HMPREF1078_RS01825 0.14 -1.6 455,322 - HMPREF1078_RS01825 0.14 -1.3 455,363 + HMPREF1078_RS01825 0.18 -1.2 455,394 + HMPREF1078_RS01825 0.20 +0.7 455,394 + HMPREF1078_RS01825 0.20 -2.1 455,395 - HMPREF1078_RS01825 0.20 +0.3 455,395 - HMPREF1078_RS01825 0.20 -2.1 455,441 + HMPREF1078_RS01825 0.24 -1.4 455,442 - HMPREF1078_RS01825 0.24 -0.6 455,493 - HMPREF1078_RS01825 0.29 -0.3 455,499 - HMPREF1078_RS01825 0.29 -0.3 455,527 + HMPREF1078_RS01825 0.32 -0.4 455,528 - HMPREF1078_RS01825 0.32 -2.7 455,700 - HMPREF1078_RS01825 0.47 +1.7 455,733 - HMPREF1078_RS01825 0.50 -0.9 455,733 - HMPREF1078_RS01825 0.50 -1.4 455,843 + HMPREF1078_RS01825 0.59 -0.9 455,843 + HMPREF1078_RS01825 0.59 +1.3 455,843 + HMPREF1078_RS01825 0.59 +0.3 455,843 + HMPREF1078_RS01825 0.59 -1.2 455,844 - HMPREF1078_RS01825 0.59 -0.9 456,120 + HMPREF1078_RS01825 0.83 +2.3 456,120 + HMPREF1078_RS01825 0.83 -1.6 456,120 + HMPREF1078_RS01825 0.83 -0.9 456,124 - HMPREF1078_RS01825 0.83 -0.7 456,147 + HMPREF1078_RS01825 0.85 -0.9 456,148 - HMPREF1078_RS01825 0.86 -1.8 456,153 + HMPREF1078_RS01825 0.86 -0.5 456,153 + HMPREF1078_RS01825 0.86 -0.3 456,153 + HMPREF1078_RS01825 0.86 -0.7 456,153 + HMPREF1078_RS01825 0.86 -0.5 456,154 - HMPREF1078_RS01825 0.86 +1.1 456,154 - HMPREF1078_RS01825 0.86 -0.0 456,154 - HMPREF1078_RS01825 0.86 -2.2 456,159 + HMPREF1078_RS01825 0.86 +0.9 456,159 + HMPREF1078_RS01825 0.86 +1.3 456,160 - HMPREF1078_RS01825 0.87 -1.5 456,160 - HMPREF1078_RS01825 0.87 +1.9 456,160 - HMPREF1078_RS01825 0.87 -0.6 456,161 + HMPREF1078_RS01825 0.87 +1.3 456,161 + HMPREF1078_RS01825 0.87 -0.9 456,161 + HMPREF1078_RS01825 0.87 -1.3 456,162 - HMPREF1078_RS01825 0.87 -1.7 456,162 - HMPREF1078_RS01825 0.87 +0.7 456,162 - HMPREF1078_RS01825 0.87 +2.3 456,164 + HMPREF1078_RS01825 0.87 -1.3 456,165 - HMPREF1078_RS01825 0.87 -0.2 456,165 - HMPREF1078_RS01825 0.87 -0.1 456,165 - HMPREF1078_RS01825 0.87 -1.2 456,165 - HMPREF1078_RS01825 0.87 -1.5 456,295 + -1.4 456,296 - +0.3 456,312 + +0.4 456,366 - -0.2 456,402 + -0.7 456,455 + -2.3 456,457 + -2.2 456,544 + +2.3 456,564 + -0.5 456,701 + HMPREF1078_RS01830 0.23 +0.3 456,701 + HMPREF1078_RS01830 0.23 +0.3 456,701 + HMPREF1078_RS01830 0.23 -0.0 456,761 + HMPREF1078_RS01830 0.29 +2.3 456,914 + HMPREF1078_RS01830 0.44 +1.3 456,914 + HMPREF1078_RS01830 0.44 +2.3 456,999 + HMPREF1078_RS01830 0.53 +2.3 457,072 + HMPREF1078_RS01830 0.60 +1.3 457,135 + HMPREF1078_RS01830 0.66 +1.3 457,185 + HMPREF1078_RS01830 0.71 +0.3 457,185 + HMPREF1078_RS01830 0.71 -0.0
Or see this region's nucleotide sequence