Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16225 and HMPREF1078_RS18970 are separated by 101 nucleotides HMPREF1078_RS18970 and HMPREF1078_RS16230 are separated by 153 nucleotides HMPREF1078_RS16230 and HMPREF1078_RS16235 overlap by 14 nucleotides HMPREF1078_RS16235 and HMPREF1078_RS16240 are separated by 114 nucleotides
HMPREF1078_RS16225: HMPREF1078_RS16225 - DUF3276 family protein, at 369,694 to 370,056
_RS16225
HMPREF1078_RS18970: HMPREF1078_RS18970 - 4Fe-4S binding protein, at 370,158 to 370,328
_RS18970
HMPREF1078_RS16230: HMPREF1078_RS16230 - porin family protein, at 370,482 to 371,216
_RS16230
HMPREF1078_RS16235: HMPREF1078_RS16235 - phosphatidate cytidylyltransferase, at 371,203 to 372,036
_RS16235
HMPREF1078_RS16240: HMPREF1078_RS16240 - ATP-dependent zinc metalloprotease FtsH, at 372,151 to 374,145
_RS16240
Position (kb) 370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 369.552 kb on - strand at 369.560 kb on + strand at 369.567 kb on + strand at 369.568 kb on - strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.590 kb on + strand at 369.591 kb on - strand at 369.593 kb on - strand at 369.641 kb on + strand at 369.641 kb on + strand at 369.655 kb on + strand at 369.656 kb on - strand at 369.690 kb on + strand at 369.690 kb on + strand at 369.717 kb on - strand at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.746 kb on + strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.747 kb on - strand, within HMPREF1078_RS16225 at 369.748 kb on + strand, within HMPREF1078_RS16225 at 369.748 kb on + strand, within HMPREF1078_RS16225 at 369.749 kb on - strand, within HMPREF1078_RS16225 at 369.753 kb on + strand, within HMPREF1078_RS16225 at 369.753 kb on + strand, within HMPREF1078_RS16225 at 369.753 kb on + strand, within HMPREF1078_RS16225 at 369.754 kb on - strand, within HMPREF1078_RS16225 at 369.762 kb on + strand, within HMPREF1078_RS16225 at 369.782 kb on - strand, within HMPREF1078_RS16225 at 369.785 kb on - strand, within HMPREF1078_RS16225 at 369.794 kb on + strand, within HMPREF1078_RS16225 at 369.794 kb on + strand, within HMPREF1078_RS16225 at 369.864 kb on + strand, within HMPREF1078_RS16225 at 369.864 kb on + strand, within HMPREF1078_RS16225 at 369.864 kb on + strand, within HMPREF1078_RS16225 at 369.865 kb on - strand, within HMPREF1078_RS16225 at 369.888 kb on + strand, within HMPREF1078_RS16225 at 369.888 kb on + strand, within HMPREF1078_RS16225 at 369.889 kb on - strand, within HMPREF1078_RS16225 at 369.902 kb on - strand, within HMPREF1078_RS16225 at 369.902 kb on - strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.944 kb on + strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.945 kb on - strand, within HMPREF1078_RS16225 at 369.952 kb on + strand, within HMPREF1078_RS16225 at 369.952 kb on + strand, within HMPREF1078_RS16225 at 369.957 kb on + strand, within HMPREF1078_RS16225 at 369.957 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 369.966 kb on + strand, within HMPREF1078_RS16225 at 370.042 kb on - strand at 370.044 kb on + strand at 370.081 kb on + strand at 370.082 kb on - strand at 370.085 kb on - strand at 370.085 kb on - strand at 370.115 kb on + strand at 370.115 kb on + strand at 370.116 kb on - strand at 370.122 kb on - strand at 370.124 kb on - strand at 370.143 kb on + strand at 370.144 kb on - strand at 370.355 kb on - strand at 370.358 kb on - strand at 370.358 kb on - strand at 370.358 kb on - strand at 370.420 kb on + strand at 370.421 kb on - strand at 370.421 kb on - strand at 370.458 kb on - strand at 370.471 kb on + strand at 370.492 kb on + strand at 370.492 kb on + strand at 370.495 kb on + strand at 370.496 kb on - strand at 370.500 kb on - strand at 370.500 kb on - strand at 370.500 kb on - strand at 370.502 kb on + strand at 370.503 kb on - strand at 370.504 kb on + strand at 370.504 kb on + strand at 370.504 kb on + strand at 370.504 kb on + strand at 370.505 kb on - strand at 370.505 kb on - strand at 370.505 kb on - strand at 370.535 kb on - strand at 370.570 kb on - strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.606 kb on + strand, within HMPREF1078_RS16230 at 370.631 kb on - strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.637 kb on + strand, within HMPREF1078_RS16230 at 370.638 kb on - strand, within HMPREF1078_RS16230 at 370.641 kb on - strand, within HMPREF1078_RS16230 at 370.671 kb on + strand, within HMPREF1078_RS16230 at 370.703 kb on + strand, within HMPREF1078_RS16230 at 370.724 kb on + strand, within HMPREF1078_RS16230 at 370.724 kb on + strand, within HMPREF1078_RS16230 at 370.725 kb on - strand, within HMPREF1078_RS16230 at 370.725 kb on - strand, within HMPREF1078_RS16230 at 370.725 kb on - strand, within HMPREF1078_RS16230 at 370.728 kb on + strand, within HMPREF1078_RS16230 at 370.728 kb on + strand, within HMPREF1078_RS16230 at 370.728 kb on + strand, within HMPREF1078_RS16230 at 370.729 kb on - strand, within HMPREF1078_RS16230 at 370.729 kb on - strand, within HMPREF1078_RS16230 at 370.729 kb on - strand, within HMPREF1078_RS16230 at 370.846 kb on + strand, within HMPREF1078_RS16230 at 370.847 kb on - strand, within HMPREF1078_RS16230 at 370.854 kb on + strand, within HMPREF1078_RS16230 at 370.854 kb on + strand, within HMPREF1078_RS16230 at 370.855 kb on - strand, within HMPREF1078_RS16230 at 370.878 kb on + strand, within HMPREF1078_RS16230 at 370.879 kb on - strand, within HMPREF1078_RS16230 at 370.879 kb on - strand, within HMPREF1078_RS16230 at 370.905 kb on + strand, within HMPREF1078_RS16230 at 370.905 kb on + strand, within HMPREF1078_RS16230 at 370.905 kb on + strand, within HMPREF1078_RS16230 at 370.906 kb on - strand, within HMPREF1078_RS16230 at 370.925 kb on + strand, within HMPREF1078_RS16230 at 370.925 kb on + strand, within HMPREF1078_RS16230 at 370.925 kb on + strand, within HMPREF1078_RS16230 at 370.926 kb on - strand, within HMPREF1078_RS16230 at 370.926 kb on - strand, within HMPREF1078_RS16230 at 370.929 kb on + strand, within HMPREF1078_RS16230 at 370.930 kb on - strand, within HMPREF1078_RS16230 at 370.939 kb on - strand, within HMPREF1078_RS16230 at 370.939 kb on - strand, within HMPREF1078_RS16230 at 370.956 kb on + strand, within HMPREF1078_RS16230 at 370.957 kb on - strand, within HMPREF1078_RS16230 at 370.957 kb on - strand, within HMPREF1078_RS16230 at 371.049 kb on + strand, within HMPREF1078_RS16230 at 371.050 kb on - strand, within HMPREF1078_RS16230 at 371.069 kb on - strand, within HMPREF1078_RS16230 at 371.081 kb on + strand, within HMPREF1078_RS16230 at 371.082 kb on - strand, within HMPREF1078_RS16230 at 371.088 kb on - strand, within HMPREF1078_RS16230 at 371.101 kb on + strand, within HMPREF1078_RS16230 at 371.205 kb on - strand at 372.070 kb on - strand at 372.076 kb on - strand at 372.076 kb on - strand at 372.076 kb on - strand at 372.082 kb on - strand at 372.082 kb on - strand at 372.143 kb on - strand at 372.152 kb on + strand at 372.152 kb on + strand at 372.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 369,552 - -0.1 369,560 + -2.1 369,567 + +2.7 369,568 - -0.1 369,590 + -1.5 369,590 + -0.8 369,590 + +0.1 369,590 + +1.5 369,590 + -2.7 369,591 - -2.2 369,593 - -2.7 369,641 + +0.5 369,641 + +0.1 369,655 + -0.4 369,656 - -1.0 369,690 + +1.6 369,690 + -0.1 369,717 - -0.7 369,746 + HMPREF1078_RS16225 0.14 +0.5 369,746 + HMPREF1078_RS16225 0.14 -0.1 369,746 + HMPREF1078_RS16225 0.14 -1.5 369,746 + HMPREF1078_RS16225 0.14 -0.7 369,747 - HMPREF1078_RS16225 0.15 -0.3 369,747 - HMPREF1078_RS16225 0.15 +0.3 369,747 - HMPREF1078_RS16225 0.15 -0.5 369,747 - HMPREF1078_RS16225 0.15 -1.2 369,748 + HMPREF1078_RS16225 0.15 +0.1 369,748 + HMPREF1078_RS16225 0.15 -2.7 369,749 - HMPREF1078_RS16225 0.15 +0.9 369,753 + HMPREF1078_RS16225 0.16 -0.7 369,753 + HMPREF1078_RS16225 0.16 -0.1 369,753 + HMPREF1078_RS16225 0.16 -2.4 369,754 - HMPREF1078_RS16225 0.17 +0.5 369,762 + HMPREF1078_RS16225 0.19 -2.4 369,782 - HMPREF1078_RS16225 0.24 -2.0 369,785 - HMPREF1078_RS16225 0.25 -2.4 369,794 + HMPREF1078_RS16225 0.28 +1.5 369,794 + HMPREF1078_RS16225 0.28 +1.5 369,864 + HMPREF1078_RS16225 0.47 -1.3 369,864 + HMPREF1078_RS16225 0.47 +0.5 369,864 + HMPREF1078_RS16225 0.47 -0.6 369,865 - HMPREF1078_RS16225 0.47 -0.1 369,888 + HMPREF1078_RS16225 0.53 -0.2 369,888 + HMPREF1078_RS16225 0.53 +0.3 369,889 - HMPREF1078_RS16225 0.54 -0.8 369,902 - HMPREF1078_RS16225 0.57 -0.2 369,902 - HMPREF1078_RS16225 0.57 -0.7 369,944 + HMPREF1078_RS16225 0.69 +0.5 369,944 + HMPREF1078_RS16225 0.69 -2.3 369,944 + HMPREF1078_RS16225 0.69 -1.0 369,944 + HMPREF1078_RS16225 0.69 -0.5 369,945 - HMPREF1078_RS16225 0.69 -1.7 369,945 - HMPREF1078_RS16225 0.69 -1.5 369,945 - HMPREF1078_RS16225 0.69 -1.0 369,945 - HMPREF1078_RS16225 0.69 -1.5 369,952 + HMPREF1078_RS16225 0.71 +0.5 369,952 + HMPREF1078_RS16225 0.71 -1.4 369,957 + HMPREF1078_RS16225 0.72 -0.3 369,957 + HMPREF1078_RS16225 0.72 -2.0 369,966 + HMPREF1078_RS16225 0.75 +0.5 369,966 + HMPREF1078_RS16225 0.75 -2.2 369,966 + HMPREF1078_RS16225 0.75 -1.5 369,966 + HMPREF1078_RS16225 0.75 -1.3 370,042 - -0.3 370,044 + -0.3 370,081 + +1.5 370,082 - -0.5 370,085 - -0.3 370,085 - -0.7 370,115 + +1.1 370,115 + -0.1 370,116 - -0.8 370,122 - +0.3 370,124 - -0.5 370,143 + -1.1 370,144 - +1.5 370,355 - -0.1 370,358 - +0.5 370,358 - +2.1 370,358 - -0.2 370,420 + -0.1 370,421 - +1.6 370,421 - -0.4 370,458 - -2.3 370,471 + -0.1 370,492 + -0.8 370,492 + -0.1 370,495 + +1.1 370,496 - -1.3 370,500 - -0.8 370,500 - -0.5 370,500 - -2.2 370,502 + -0.5 370,503 - +1.5 370,504 + -1.8 370,504 + -0.5 370,504 + -0.1 370,504 + +0.5 370,505 - -0.8 370,505 - -2.2 370,505 - -0.8 370,535 - -0.1 370,570 - HMPREF1078_RS16230 0.12 +0.5 370,606 + HMPREF1078_RS16230 0.17 -0.1 370,606 + HMPREF1078_RS16230 0.17 -0.5 370,606 + HMPREF1078_RS16230 0.17 -0.5 370,606 + HMPREF1078_RS16230 0.17 -1.8 370,631 - HMPREF1078_RS16230 0.20 -0.5 370,637 + HMPREF1078_RS16230 0.21 -1.3 370,637 + HMPREF1078_RS16230 0.21 -0.8 370,637 + HMPREF1078_RS16230 0.21 -1.1 370,637 + HMPREF1078_RS16230 0.21 -0.1 370,637 + HMPREF1078_RS16230 0.21 +1.5 370,638 - HMPREF1078_RS16230 0.21 -2.1 370,641 - HMPREF1078_RS16230 0.22 -1.1 370,671 + HMPREF1078_RS16230 0.26 +0.5 370,703 + HMPREF1078_RS16230 0.30 -3.3 370,724 + HMPREF1078_RS16230 0.33 -1.1 370,724 + HMPREF1078_RS16230 0.33 -2.7 370,725 - HMPREF1078_RS16230 0.33 -1.1 370,725 - HMPREF1078_RS16230 0.33 +0.5 370,725 - HMPREF1078_RS16230 0.33 +0.5 370,728 + HMPREF1078_RS16230 0.33 -0.1 370,728 + HMPREF1078_RS16230 0.33 -0.1 370,728 + HMPREF1078_RS16230 0.33 -0.8 370,729 - HMPREF1078_RS16230 0.34 -1.8 370,729 - HMPREF1078_RS16230 0.34 -0.1 370,729 - HMPREF1078_RS16230 0.34 -1.8 370,846 + HMPREF1078_RS16230 0.50 -2.6 370,847 - HMPREF1078_RS16230 0.50 -0.8 370,854 + HMPREF1078_RS16230 0.51 -0.1 370,854 + HMPREF1078_RS16230 0.51 +0.5 370,855 - HMPREF1078_RS16230 0.51 +0.5 370,878 + HMPREF1078_RS16230 0.54 -1.5 370,879 - HMPREF1078_RS16230 0.54 -1.5 370,879 - HMPREF1078_RS16230 0.54 +0.5 370,905 + HMPREF1078_RS16230 0.58 -2.8 370,905 + HMPREF1078_RS16230 0.58 -0.5 370,905 + HMPREF1078_RS16230 0.58 -1.1 370,906 - HMPREF1078_RS16230 0.58 -0.1 370,925 + HMPREF1078_RS16230 0.60 -0.1 370,925 + HMPREF1078_RS16230 0.60 +0.5 370,925 + HMPREF1078_RS16230 0.60 -1.7 370,926 - HMPREF1078_RS16230 0.60 -0.1 370,926 - HMPREF1078_RS16230 0.60 -0.8 370,929 + HMPREF1078_RS16230 0.61 -1.1 370,930 - HMPREF1078_RS16230 0.61 +1.5 370,939 - HMPREF1078_RS16230 0.62 -1.1 370,939 - HMPREF1078_RS16230 0.62 +0.5 370,956 + HMPREF1078_RS16230 0.64 -0.8 370,957 - HMPREF1078_RS16230 0.65 -1.5 370,957 - HMPREF1078_RS16230 0.65 -1.1 371,049 + HMPREF1078_RS16230 0.77 -1.5 371,050 - HMPREF1078_RS16230 0.77 +1.5 371,069 - HMPREF1078_RS16230 0.80 +0.5 371,081 + HMPREF1078_RS16230 0.81 -0.1 371,082 - HMPREF1078_RS16230 0.82 +1.5 371,088 - HMPREF1078_RS16230 0.82 -1.3 371,101 + HMPREF1078_RS16230 0.84 -0.5 371,205 - -1.5 372,070 - +4.1 372,076 - -2.3 372,076 - +0.0 372,076 - -0.1 372,082 - +0.5 372,082 - +0.6 372,143 - +0.1 372,152 + -2.0 372,152 + -1.4 372,153 - -0.9
Or see this region's nucleotide sequence