Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16215

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16210 and HMPREF1078_RS16215 are separated by 12 nucleotidesHMPREF1078_RS16215 and HMPREF1078_RS16220 are separated by 62 nucleotides HMPREF1078_RS16210: HMPREF1078_RS16210 - hypothetical protein, at 367,143 to 368,156 _RS16210 HMPREF1078_RS16215: HMPREF1078_RS16215 - preprotein translocase subunit YajC, at 368,169 to 368,480 _RS16215 HMPREF1078_RS16220: HMPREF1078_RS16220 - transcription antitermination factor NusB, at 368,543 to 369,469 _RS16220 Position (kb) 368 369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 367.379 kb on - strand, within HMPREF1078_RS16210at 367.411 kb on - strand, within HMPREF1078_RS16210at 367.431 kb on - strand, within HMPREF1078_RS16210at 367.431 kb on - strand, within HMPREF1078_RS16210at 367.433 kb on - strand, within HMPREF1078_RS16210at 367.547 kb on - strand, within HMPREF1078_RS16210at 367.547 kb on - strand, within HMPREF1078_RS16210at 367.617 kb on - strand, within HMPREF1078_RS16210at 367.624 kb on - strand, within HMPREF1078_RS16210at 367.709 kb on - strand, within HMPREF1078_RS16210at 367.722 kb on - strand, within HMPREF1078_RS16210at 367.722 kb on - strand, within HMPREF1078_RS16210at 367.774 kb on - strand, within HMPREF1078_RS16210at 367.774 kb on - strand, within HMPREF1078_RS16210at 367.788 kb on - strand, within HMPREF1078_RS16210at 367.877 kb on - strand, within HMPREF1078_RS16210at 367.877 kb on - strand, within HMPREF1078_RS16210at 367.888 kb on - strand, within HMPREF1078_RS16210at 367.917 kb on - strand, within HMPREF1078_RS16210at 367.948 kb on - strand, within HMPREF1078_RS16210at 367.948 kb on - strand, within HMPREF1078_RS16210at 367.948 kb on - strand, within HMPREF1078_RS16210at 367.948 kb on - strand, within HMPREF1078_RS16210at 367.950 kb on - strand, within HMPREF1078_RS16210at 367.950 kb on - strand, within HMPREF1078_RS16210at 367.950 kb on - strand, within HMPREF1078_RS16210at 367.950 kb on - strand, within HMPREF1078_RS16210at 367.970 kb on - strand, within HMPREF1078_RS16210at 367.989 kb on - strand, within HMPREF1078_RS16210at 367.993 kb on - strand, within HMPREF1078_RS16210at 367.993 kb on - strand, within HMPREF1078_RS16210at 367.993 kb on - strand, within HMPREF1078_RS16210at 367.993 kb on - strand, within HMPREF1078_RS16210at 367.993 kb on - strand, within HMPREF1078_RS16210at 368.000 kb on - strand, within HMPREF1078_RS16210at 368.000 kb on - strand, within HMPREF1078_RS16210at 368.047 kb on - strand, within HMPREF1078_RS16210at 368.049 kb on - strand, within HMPREF1078_RS16210at 368.157 kb on - strandat 368.157 kb on - strandat 368.157 kb on - strandat 368.157 kb on - strandat 368.157 kb on - strandat 368.157 kb on - strandat 368.230 kb on - strand, within HMPREF1078_RS16215at 368.230 kb on - strand, within HMPREF1078_RS16215at 368.230 kb on - strand, within HMPREF1078_RS16215at 368.230 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.256 kb on - strand, within HMPREF1078_RS16215at 368.258 kb on - strand, within HMPREF1078_RS16215at 368.258 kb on - strand, within HMPREF1078_RS16215at 368.258 kb on - strand, within HMPREF1078_RS16215at 368.258 kb on - strand, within HMPREF1078_RS16215at 368.258 kb on - strand, within HMPREF1078_RS16215at 368.258 kb on - strand, within HMPREF1078_RS16215at 368.288 kb on - strand, within HMPREF1078_RS16215at 368.292 kb on - strand, within HMPREF1078_RS16215at 368.292 kb on - strand, within HMPREF1078_RS16215at 368.292 kb on - strand, within HMPREF1078_RS16215at 368.292 kb on - strand, within HMPREF1078_RS16215at 368.382 kb on - strand, within HMPREF1078_RS16215at 368.390 kb on - strand, within HMPREF1078_RS16215at 368.406 kb on - strand, within HMPREF1078_RS16215at 368.406 kb on - strand, within HMPREF1078_RS16215at 368.419 kb on - strand, within HMPREF1078_RS16215at 368.424 kb on - strand, within HMPREF1078_RS16215at 368.461 kb on - strandat 368.466 kb on - strandat 368.469 kb on - strandat 368.469 kb on - strandat 368.473 kb on - strandat 368.473 kb on - strandat 368.481 kb on - strandat 368.481 kb on - strandat 368.481 kb on - strandat 368.483 kb on - strandat 368.483 kb on - strandat 368.487 kb on - strandat 368.487 kb on - strandat 368.487 kb on - strandat 368.489 kb on - strandat 368.496 kb on - strandat 368.499 kb on - strandat 368.499 kb on - strandat 368.541 kb on - strandat 368.541 kb on - strandat 368.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
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367,379 - HMPREF1078_RS16210 0.23 -1.1
367,411 - HMPREF1078_RS16210 0.26 -0.4
367,431 - HMPREF1078_RS16210 0.28 -1.1
367,431 - HMPREF1078_RS16210 0.28 -0.2
367,433 - HMPREF1078_RS16210 0.29 -0.8
367,547 - HMPREF1078_RS16210 0.40 +2.5
367,547 - HMPREF1078_RS16210 0.40 +0.1
367,617 - HMPREF1078_RS16210 0.47 +2.2
367,624 - HMPREF1078_RS16210 0.47 +0.5
367,709 - HMPREF1078_RS16210 0.56 +0.5
367,722 - HMPREF1078_RS16210 0.57 +0.3
367,722 - HMPREF1078_RS16210 0.57 +0.6
367,774 - HMPREF1078_RS16210 0.62 -0.5
367,774 - HMPREF1078_RS16210 0.62 +0.4
367,788 - HMPREF1078_RS16210 0.64 -0.7
367,877 - HMPREF1078_RS16210 0.72 +0.6
367,877 - HMPREF1078_RS16210 0.72 +0.2
367,888 - HMPREF1078_RS16210 0.73 -0.1
367,917 - HMPREF1078_RS16210 0.76 -0.5
367,948 - HMPREF1078_RS16210 0.79 -2.5
367,948 - HMPREF1078_RS16210 0.79 +1.9
367,948 - HMPREF1078_RS16210 0.79 -0.1
367,948 - HMPREF1078_RS16210 0.79 -2.5
367,950 - HMPREF1078_RS16210 0.80 -0.8
367,950 - HMPREF1078_RS16210 0.80 -1.3
367,950 - HMPREF1078_RS16210 0.80 +1.8
367,950 - HMPREF1078_RS16210 0.80 -1.3
367,970 - HMPREF1078_RS16210 0.82 -2.5
367,989 - HMPREF1078_RS16210 0.83 -2.0
367,993 - HMPREF1078_RS16210 0.84 -1.5
367,993 - HMPREF1078_RS16210 0.84 -1.6
367,993 - HMPREF1078_RS16210 0.84 -1.5
367,993 - HMPREF1078_RS16210 0.84 +1.5
367,993 - HMPREF1078_RS16210 0.84 -2.7
368,000 - HMPREF1078_RS16210 0.85 -2.3
368,000 - HMPREF1078_RS16210 0.85 -1.5
368,047 - HMPREF1078_RS16210 0.89 -2.7
368,049 - HMPREF1078_RS16210 0.89 -1.7
368,157 - -1.1
368,157 - +0.5
368,157 - -1.7
368,157 - -4.0
368,157 - -3.1
368,157 - -2.1
368,230 - HMPREF1078_RS16215 0.20 -1.4
368,230 - HMPREF1078_RS16215 0.20 -2.1
368,230 - HMPREF1078_RS16215 0.20 +0.5
368,230 - HMPREF1078_RS16215 0.20 -1.3
368,256 - HMPREF1078_RS16215 0.28 -0.1
368,256 - HMPREF1078_RS16215 0.28 -0.1
368,256 - HMPREF1078_RS16215 0.28 -0.9
368,256 - HMPREF1078_RS16215 0.28 +1.5
368,256 - HMPREF1078_RS16215 0.28 -1.2
368,256 - HMPREF1078_RS16215 0.28 -0.2
368,256 - HMPREF1078_RS16215 0.28 -1.1
368,256 - HMPREF1078_RS16215 0.28 -2.7
368,256 - HMPREF1078_RS16215 0.28 -2.8
368,256 - HMPREF1078_RS16215 0.28 -0.8
368,256 - HMPREF1078_RS16215 0.28 -1.8
368,256 - HMPREF1078_RS16215 0.28 -1.8
368,256 - HMPREF1078_RS16215 0.28 -0.8
368,256 - HMPREF1078_RS16215 0.28 -1.1
368,256 - HMPREF1078_RS16215 0.28 -1.8
368,256 - HMPREF1078_RS16215 0.28 -1.3
368,256 - HMPREF1078_RS16215 0.28 +1.5
368,256 - HMPREF1078_RS16215 0.28 -0.1
368,256 - HMPREF1078_RS16215 0.28 -2.5
368,256 - HMPREF1078_RS16215 0.28 -2.2
368,258 - HMPREF1078_RS16215 0.29 -2.2
368,258 - HMPREF1078_RS16215 0.29 +0.5
368,258 - HMPREF1078_RS16215 0.29 +0.2
368,258 - HMPREF1078_RS16215 0.29 -2.1
368,258 - HMPREF1078_RS16215 0.29 -1.0
368,258 - HMPREF1078_RS16215 0.29 -0.5
368,288 - HMPREF1078_RS16215 0.38 -1.9
368,292 - HMPREF1078_RS16215 0.39 -3.5
368,292 - HMPREF1078_RS16215 0.39 -2.2
368,292 - HMPREF1078_RS16215 0.39 -1.7
368,292 - HMPREF1078_RS16215 0.39 -2.7
368,382 - HMPREF1078_RS16215 0.68 -2.7
368,390 - HMPREF1078_RS16215 0.71 -2.3
368,406 - HMPREF1078_RS16215 0.76 -2.5
368,406 - HMPREF1078_RS16215 0.76 -2.8
368,419 - HMPREF1078_RS16215 0.80 -1.1
368,424 - HMPREF1078_RS16215 0.82 -1.8
368,461 - -3.3
368,466 - -2.1
368,469 - -3.0
368,469 - -3.0
368,473 - -1.7
368,473 - +0.5
368,481 - -0.8
368,481 - -0.8
368,481 - -1.1
368,483 - -0.3
368,483 - -0.5
368,487 - -0.8
368,487 - +1.5
368,487 - -1.3
368,489 - -2.5
368,496 - -0.1
368,499 - -0.1
368,499 - -1.6
368,541 - +0.9
368,541 - -1.4
368,559 - +1.5

Or see this region's nucleotide sequence