Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15840 and HMPREF1078_RS15845 are separated by 232 nucleotides HMPREF1078_RS15845 and HMPREF1078_RS15850 are separated by 75 nucleotides HMPREF1078_RS15850 and HMPREF1078_RS15855 overlap by 4 nucleotides
HMPREF1078_RS15840: HMPREF1078_RS15840 - DMT family transporter, at 283,369 to 284,298
_RS15840
HMPREF1078_RS15845: HMPREF1078_RS15845 - copper homeostasis protein CutC, at 284,531 to 285,268
_RS15845
HMPREF1078_RS15850: HMPREF1078_RS15850 - PspC domain-containing protein, at 285,344 to 285,547
_RS15850
HMPREF1078_RS15855: HMPREF1078_RS15855 - excinuclease ABC subunit UvrB, at 285,544 to 287,571
_RS15855
Position (kb) 284
285
286 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 283.535 kb on + strand, within HMPREF1078_RS15840 at 283.535 kb on + strand, within HMPREF1078_RS15840 at 283.536 kb on - strand, within HMPREF1078_RS15840 at 283.536 kb on - strand, within HMPREF1078_RS15840 at 283.559 kb on - strand, within HMPREF1078_RS15840 at 283.630 kb on + strand, within HMPREF1078_RS15840 at 283.630 kb on + strand, within HMPREF1078_RS15840 at 283.634 kb on + strand, within HMPREF1078_RS15840 at 283.638 kb on + strand, within HMPREF1078_RS15840 at 283.638 kb on + strand, within HMPREF1078_RS15840 at 283.682 kb on + strand, within HMPREF1078_RS15840 at 283.683 kb on - strand, within HMPREF1078_RS15840 at 283.698 kb on + strand, within HMPREF1078_RS15840 at 283.698 kb on + strand, within HMPREF1078_RS15840 at 283.699 kb on - strand, within HMPREF1078_RS15840 at 283.770 kb on - strand, within HMPREF1078_RS15840 at 283.770 kb on - strand, within HMPREF1078_RS15840 at 283.778 kb on - strand, within HMPREF1078_RS15840 at 283.781 kb on + strand, within HMPREF1078_RS15840 at 283.782 kb on - strand, within HMPREF1078_RS15840 at 283.782 kb on - strand, within HMPREF1078_RS15840 at 283.818 kb on + strand, within HMPREF1078_RS15840 at 283.819 kb on - strand, within HMPREF1078_RS15840 at 283.819 kb on - strand, within HMPREF1078_RS15840 at 283.852 kb on + strand, within HMPREF1078_RS15840 at 284.008 kb on + strand, within HMPREF1078_RS15840 at 284.008 kb on + strand, within HMPREF1078_RS15840 at 284.037 kb on + strand, within HMPREF1078_RS15840 at 284.038 kb on - strand, within HMPREF1078_RS15840 at 284.038 kb on - strand, within HMPREF1078_RS15840 at 284.039 kb on + strand, within HMPREF1078_RS15840 at 284.039 kb on + strand, within HMPREF1078_RS15840 at 284.040 kb on - strand, within HMPREF1078_RS15840 at 284.044 kb on - strand, within HMPREF1078_RS15840 at 284.044 kb on - strand, within HMPREF1078_RS15840 at 284.056 kb on + strand, within HMPREF1078_RS15840 at 284.179 kb on + strand, within HMPREF1078_RS15840 at 284.198 kb on - strand, within HMPREF1078_RS15840 at 284.209 kb on + strand at 284.248 kb on + strand at 284.248 kb on + strand at 284.249 kb on - strand at 284.249 kb on - strand at 284.249 kb on - strand at 284.467 kb on + strand at 284.467 kb on + strand at 284.467 kb on + strand at 284.468 kb on - strand at 284.485 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.499 kb on + strand at 284.500 kb on - strand at 284.503 kb on + strand at 284.516 kb on - strand at 284.521 kb on + strand at 284.522 kb on - strand at 284.545 kb on + strand at 284.545 kb on + strand at 284.546 kb on - strand at 284.546 kb on - strand at 284.546 kb on - strand at 284.657 kb on + strand, within HMPREF1078_RS15845 at 284.701 kb on + strand, within HMPREF1078_RS15845 at 284.701 kb on + strand, within HMPREF1078_RS15845 at 284.703 kb on + strand, within HMPREF1078_RS15845 at 284.704 kb on - strand, within HMPREF1078_RS15845 at 284.704 kb on - strand, within HMPREF1078_RS15845 at 284.743 kb on + strand, within HMPREF1078_RS15845 at 284.744 kb on - strand, within HMPREF1078_RS15845 at 284.811 kb on + strand, within HMPREF1078_RS15845 at 284.812 kb on - strand, within HMPREF1078_RS15845 at 285.136 kb on + strand, within HMPREF1078_RS15845 at 285.136 kb on + strand, within HMPREF1078_RS15845 at 285.137 kb on - strand, within HMPREF1078_RS15845 at 285.137 kb on - strand, within HMPREF1078_RS15845 at 285.174 kb on - strand, within HMPREF1078_RS15845 at 285.266 kb on + strand at 285.280 kb on + strand at 285.355 kb on + strand at 285.356 kb on - strand at 285.356 kb on - strand at 285.387 kb on + strand, within HMPREF1078_RS15850 at 285.434 kb on - strand, within HMPREF1078_RS15850 at 285.438 kb on + strand, within HMPREF1078_RS15850 at 285.438 kb on + strand, within HMPREF1078_RS15850 at 285.452 kb on + strand, within HMPREF1078_RS15850 at 285.452 kb on + strand, within HMPREF1078_RS15850 at 285.454 kb on + strand, within HMPREF1078_RS15850 at 285.454 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.459 kb on + strand, within HMPREF1078_RS15850 at 285.460 kb on - strand, within HMPREF1078_RS15850 at 285.466 kb on + strand, within HMPREF1078_RS15850 at 285.466 kb on + strand, within HMPREF1078_RS15850 at 285.497 kb on + strand, within HMPREF1078_RS15850 at 285.518 kb on - strand, within HMPREF1078_RS15850 at 285.519 kb on + strand, within HMPREF1078_RS15850 at 285.519 kb on + strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.523 kb on + strand, within HMPREF1078_RS15850 at 285.533 kb on - strand at 285.533 kb on - strand at 285.539 kb on - strand at 285.539 kb on - strand at 285.557 kb on + strand at 285.557 kb on + strand at 285.732 kb on + strand at 285.755 kb on + strand, within HMPREF1078_RS15855 at 285.756 kb on - strand, within HMPREF1078_RS15855 at 285.756 kb on - strand, within HMPREF1078_RS15855 at 285.758 kb on - strand, within HMPREF1078_RS15855 at 285.800 kb on - strand, within HMPREF1078_RS15855 at 285.811 kb on + strand, within HMPREF1078_RS15855 at 285.812 kb on - strand, within HMPREF1078_RS15855 at 285.820 kb on + strand, within HMPREF1078_RS15855 at 285.821 kb on - strand, within HMPREF1078_RS15855 at 285.823 kb on + strand, within HMPREF1078_RS15855 at 285.859 kb on + strand, within HMPREF1078_RS15855 at 285.859 kb on + strand, within HMPREF1078_RS15855 at 285.902 kb on + strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.982 kb on - strand, within HMPREF1078_RS15855 at 286.093 kb on - strand, within HMPREF1078_RS15855 at 286.098 kb on - strand, within HMPREF1078_RS15855 at 286.185 kb on + strand, within HMPREF1078_RS15855
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 283,535 + HMPREF1078_RS15840 0.18 +1.0 283,535 + HMPREF1078_RS15840 0.18 -0.1 283,536 - HMPREF1078_RS15840 0.18 +0.5 283,536 - HMPREF1078_RS15840 0.18 -0.6 283,559 - HMPREF1078_RS15840 0.20 +1.3 283,630 + HMPREF1078_RS15840 0.28 +0.6 283,630 + HMPREF1078_RS15840 0.28 -0.1 283,634 + HMPREF1078_RS15840 0.28 +0.8 283,638 + HMPREF1078_RS15840 0.29 +1.4 283,638 + HMPREF1078_RS15840 0.29 +1.3 283,682 + HMPREF1078_RS15840 0.34 -0.5 283,683 - HMPREF1078_RS15840 0.34 -1.1 283,698 + HMPREF1078_RS15840 0.35 -0.7 283,698 + HMPREF1078_RS15840 0.35 -0.8 283,699 - HMPREF1078_RS15840 0.35 -0.6 283,770 - HMPREF1078_RS15840 0.43 +0.3 283,770 - HMPREF1078_RS15840 0.43 -0.3 283,778 - HMPREF1078_RS15840 0.44 -0.6 283,781 + HMPREF1078_RS15840 0.44 -1.2 283,782 - HMPREF1078_RS15840 0.44 -0.6 283,782 - HMPREF1078_RS15840 0.44 +0.8 283,818 + HMPREF1078_RS15840 0.48 -0.5 283,819 - HMPREF1078_RS15840 0.48 +1.5 283,819 - HMPREF1078_RS15840 0.48 -0.7 283,852 + HMPREF1078_RS15840 0.52 +3.4 284,008 + HMPREF1078_RS15840 0.69 +1.5 284,008 + HMPREF1078_RS15840 0.69 -0.4 284,037 + HMPREF1078_RS15840 0.72 -0.2 284,038 - HMPREF1078_RS15840 0.72 -0.1 284,038 - HMPREF1078_RS15840 0.72 +1.1 284,039 + HMPREF1078_RS15840 0.72 -0.6 284,039 + HMPREF1078_RS15840 0.72 +0.1 284,040 - HMPREF1078_RS15840 0.72 -0.3 284,044 - HMPREF1078_RS15840 0.73 -1.1 284,044 - HMPREF1078_RS15840 0.73 +0.6 284,056 + HMPREF1078_RS15840 0.74 +0.2 284,179 + HMPREF1078_RS15840 0.87 +1.9 284,198 - HMPREF1078_RS15840 0.89 -0.9 284,209 + -0.2 284,248 + -1.0 284,248 + -0.4 284,249 - +0.2 284,249 - +1.5 284,249 - -3.3 284,467 + +0.2 284,467 + +0.8 284,467 + -0.5 284,468 - +1.2 284,485 + +0.9 284,499 + +2.5 284,499 + -0.1 284,499 + +1.4 284,499 + -0.6 284,499 + -0.5 284,499 + +1.5 284,500 - -2.5 284,503 + +0.2 284,516 - -0.5 284,521 + -0.4 284,522 - -1.1 284,545 + -3.0 284,545 + -4.6 284,546 - -1.5 284,546 - -3.5 284,546 - -2.9 284,657 + HMPREF1078_RS15845 0.17 -1.5 284,701 + HMPREF1078_RS15845 0.23 -1.1 284,701 + HMPREF1078_RS15845 0.23 -2.7 284,703 + HMPREF1078_RS15845 0.23 -2.6 284,704 - HMPREF1078_RS15845 0.23 -3.8 284,704 - HMPREF1078_RS15845 0.23 -2.2 284,743 + HMPREF1078_RS15845 0.29 -1.7 284,744 - HMPREF1078_RS15845 0.29 +0.5 284,811 + HMPREF1078_RS15845 0.38 -0.1 284,812 - HMPREF1078_RS15845 0.38 -1.9 285,136 + HMPREF1078_RS15845 0.82 -2.5 285,136 + HMPREF1078_RS15845 0.82 -2.2 285,137 - HMPREF1078_RS15845 0.82 -3.6 285,137 - HMPREF1078_RS15845 0.82 -1.3 285,174 - HMPREF1078_RS15845 0.87 -1.1 285,266 + +0.5 285,280 + +1.5 285,355 + -1.4 285,356 - -2.1 285,356 - +0.8 285,387 + HMPREF1078_RS15850 0.21 -0.8 285,434 - HMPREF1078_RS15850 0.44 +1.5 285,438 + HMPREF1078_RS15850 0.46 -0.8 285,438 + HMPREF1078_RS15850 0.46 +1.1 285,452 + HMPREF1078_RS15850 0.53 +0.8 285,452 + HMPREF1078_RS15850 0.53 -2.4 285,454 + HMPREF1078_RS15850 0.54 +0.5 285,454 + HMPREF1078_RS15850 0.54 -2.0 285,456 + HMPREF1078_RS15850 0.55 -0.4 285,456 + HMPREF1078_RS15850 0.55 -0.6 285,456 + HMPREF1078_RS15850 0.55 -1.2 285,456 + HMPREF1078_RS15850 0.55 -1.1 285,456 + HMPREF1078_RS15850 0.55 +0.3 285,456 + HMPREF1078_RS15850 0.55 +0.9 285,456 + HMPREF1078_RS15850 0.55 +1.3 285,456 + HMPREF1078_RS15850 0.55 +0.2 285,457 - HMPREF1078_RS15850 0.55 +0.5 285,457 - HMPREF1078_RS15850 0.55 -2.2 285,457 - HMPREF1078_RS15850 0.55 -1.3 285,457 - HMPREF1078_RS15850 0.55 -0.1 285,457 - HMPREF1078_RS15850 0.55 +0.9 285,457 - HMPREF1078_RS15850 0.55 +1.5 285,459 + HMPREF1078_RS15850 0.56 +1.5 285,460 - HMPREF1078_RS15850 0.57 +1.3 285,466 + HMPREF1078_RS15850 0.60 -0.3 285,466 + HMPREF1078_RS15850 0.60 +2.8 285,497 + HMPREF1078_RS15850 0.75 -0.2 285,518 - HMPREF1078_RS15850 0.85 +0.4 285,519 + HMPREF1078_RS15850 0.86 +1.8 285,519 + HMPREF1078_RS15850 0.86 +0.2 285,520 - HMPREF1078_RS15850 0.86 -0.4 285,520 - HMPREF1078_RS15850 0.86 -0.1 285,520 - HMPREF1078_RS15850 0.86 -0.1 285,523 + HMPREF1078_RS15850 0.88 +0.4 285,533 - -2.1 285,533 - +0.1 285,539 - -0.5 285,539 - -2.3 285,557 + -2.7 285,557 + -2.5 285,732 + +0.6 285,755 + HMPREF1078_RS15855 0.10 +0.8 285,756 - HMPREF1078_RS15855 0.10 -0.8 285,756 - HMPREF1078_RS15855 0.10 -0.7 285,758 - HMPREF1078_RS15855 0.11 -1.4 285,800 - HMPREF1078_RS15855 0.13 -2.1 285,811 + HMPREF1078_RS15855 0.13 -0.1 285,812 - HMPREF1078_RS15855 0.13 -1.1 285,820 + HMPREF1078_RS15855 0.14 +0.2 285,821 - HMPREF1078_RS15855 0.14 -2.3 285,823 + HMPREF1078_RS15855 0.14 -0.2 285,859 + HMPREF1078_RS15855 0.16 -0.8 285,859 + HMPREF1078_RS15855 0.16 -1.3 285,902 + HMPREF1078_RS15855 0.18 +0.8 285,977 - HMPREF1078_RS15855 0.21 -1.0 285,977 - HMPREF1078_RS15855 0.21 -0.5 285,977 - HMPREF1078_RS15855 0.21 -2.1 285,982 - HMPREF1078_RS15855 0.22 -0.8 286,093 - HMPREF1078_RS15855 0.27 -0.1 286,098 - HMPREF1078_RS15855 0.27 -0.1 286,185 + HMPREF1078_RS15855 0.32 +0.1
Or see this region's nucleotide sequence