Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15370 and HMPREF1078_RS15375 are separated by 467 nucleotides
HMPREF1078_RS15370: HMPREF1078_RS15370 - carboxypeptidase-like regulatory domain-containing protein, at 165,935 to 166,222
_RS15370
HMPREF1078_RS15375: HMPREF1078_RS15375 - SusC/RagA family TonB-linked outer membrane protein, at 166,690 to 169,641
_RS15375
Position (kb) 165
166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 165.071 kb on + strand at 165.091 kb on + strand at 165.091 kb on + strand at 165.091 kb on + strand at 165.092 kb on - strand at 165.094 kb on + strand at 165.094 kb on + strand at 165.095 kb on - strand at 165.099 kb on - strand at 165.102 kb on + strand at 165.147 kb on + strand at 165.148 kb on - strand at 165.148 kb on - strand at 165.177 kb on + strand at 165.190 kb on - strand at 165.197 kb on + strand at 165.201 kb on + strand at 165.217 kb on - strand at 165.234 kb on + strand at 165.255 kb on + strand at 165.256 kb on - strand at 165.264 kb on + strand at 165.268 kb on + strand at 165.269 kb on - strand at 165.269 kb on - strand at 165.269 kb on - strand at 165.323 kb on - strand at 165.328 kb on - strand at 165.350 kb on - strand at 165.379 kb on - strand at 165.383 kb on + strand at 165.383 kb on + strand at 165.383 kb on + strand at 165.386 kb on - strand at 165.394 kb on - strand at 165.403 kb on + strand at 165.403 kb on + strand at 165.404 kb on - strand at 165.404 kb on - strand at 165.407 kb on + strand at 165.410 kb on + strand at 165.410 kb on + strand at 165.414 kb on + strand at 165.415 kb on - strand at 165.415 kb on - strand at 165.415 kb on - strand at 165.417 kb on + strand at 165.418 kb on - strand at 165.418 kb on - strand at 165.423 kb on + strand at 165.424 kb on - strand at 165.424 kb on - strand at 165.428 kb on - strand at 165.428 kb on - strand at 165.437 kb on + strand at 165.438 kb on - strand at 165.438 kb on - strand at 165.447 kb on - strand at 165.447 kb on - strand at 165.447 kb on - strand at 165.450 kb on + strand at 165.450 kb on + strand at 165.450 kb on + strand at 165.450 kb on + strand at 165.451 kb on - strand at 165.454 kb on - strand at 165.454 kb on - strand at 165.454 kb on - strand at 165.456 kb on + strand at 165.457 kb on - strand at 165.457 kb on - strand at 165.474 kb on - strand at 165.476 kb on + strand at 165.479 kb on + strand at 165.479 kb on + strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.483 kb on + strand at 165.483 kb on + strand at 165.484 kb on - strand at 165.500 kb on - strand at 165.517 kb on - strand at 165.520 kb on - strand at 165.543 kb on + strand at 165.544 kb on - strand at 165.544 kb on - strand at 165.560 kb on - strand at 165.606 kb on - strand at 165.617 kb on - strand at 165.617 kb on - strand at 165.757 kb on - strand at 165.819 kb on - strand at 165.820 kb on + strand at 165.829 kb on + strand at 165.872 kb on + strand at 165.873 kb on - strand at 165.873 kb on - strand at 165.874 kb on + strand at 165.875 kb on - strand at 165.875 kb on - strand at 165.875 kb on - strand at 165.875 kb on - strand at 165.879 kb on - strand at 165.879 kb on - strand at 165.900 kb on + strand at 165.908 kb on + strand at 165.911 kb on - strand at 165.935 kb on - strand at 165.967 kb on - strand, within HMPREF1078_RS15370 at 165.969 kb on + strand, within HMPREF1078_RS15370 at 166.008 kb on + strand, within HMPREF1078_RS15370 at 166.015 kb on + strand, within HMPREF1078_RS15370 at 166.015 kb on + strand, within HMPREF1078_RS15370 at 166.015 kb on + strand, within HMPREF1078_RS15370 at 166.016 kb on - strand, within HMPREF1078_RS15370 at 166.016 kb on - strand, within HMPREF1078_RS15370 at 166.021 kb on + strand, within HMPREF1078_RS15370 at 166.022 kb on - strand, within HMPREF1078_RS15370 at 166.060 kb on + strand, within HMPREF1078_RS15370 at 166.060 kb on + strand, within HMPREF1078_RS15370 at 166.060 kb on + strand, within HMPREF1078_RS15370 at 166.060 kb on + strand, within HMPREF1078_RS15370 at 166.060 kb on + strand, within HMPREF1078_RS15370 at 166.061 kb on - strand, within HMPREF1078_RS15370 at 166.061 kb on - strand, within HMPREF1078_RS15370 at 166.062 kb on + strand, within HMPREF1078_RS15370 at 166.062 kb on + strand, within HMPREF1078_RS15370 at 166.063 kb on - strand, within HMPREF1078_RS15370 at 166.063 kb on - strand, within HMPREF1078_RS15370 at 166.063 kb on - strand, within HMPREF1078_RS15370 at 166.063 kb on - strand, within HMPREF1078_RS15370 at 166.063 kb on - strand, within HMPREF1078_RS15370 at 166.070 kb on - strand, within HMPREF1078_RS15370 at 166.075 kb on + strand, within HMPREF1078_RS15370 at 166.081 kb on + strand, within HMPREF1078_RS15370 at 166.083 kb on + strand, within HMPREF1078_RS15370 at 166.084 kb on - strand, within HMPREF1078_RS15370 at 166.087 kb on + strand, within HMPREF1078_RS15370 at 166.092 kb on + strand, within HMPREF1078_RS15370 at 166.125 kb on + strand, within HMPREF1078_RS15370 at 166.125 kb on + strand, within HMPREF1078_RS15370 at 166.125 kb on + strand, within HMPREF1078_RS15370 at 166.126 kb on - strand, within HMPREF1078_RS15370 at 166.150 kb on - strand, within HMPREF1078_RS15370 at 166.746 kb on + strand at 166.781 kb on - strand at 166.806 kb on + strand at 166.807 kb on - strand at 166.827 kb on + strand at 166.827 kb on + strand at 166.827 kb on + strand at 166.898 kb on + strand at 166.899 kb on - strand at 166.899 kb on - strand at 166.911 kb on + strand at 166.911 kb on + strand at 166.912 kb on - strand at 166.914 kb on + strand at 166.914 kb on + strand at 166.915 kb on - strand at 166.915 kb on - strand at 166.966 kb on - strand at 166.980 kb on + strand at 166.988 kb on + strand, within HMPREF1078_RS15375 at 166.988 kb on + strand, within HMPREF1078_RS15375 at 166.988 kb on + strand, within HMPREF1078_RS15375 at 166.989 kb on - strand, within HMPREF1078_RS15375 at 166.990 kb on + strand, within HMPREF1078_RS15375 at 166.990 kb on + strand, within HMPREF1078_RS15375 at 166.990 kb on + strand, within HMPREF1078_RS15375 at 166.990 kb on + strand, within HMPREF1078_RS15375 at 166.990 kb on + strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.991 kb on - strand, within HMPREF1078_RS15375 at 166.994 kb on + strand, within HMPREF1078_RS15375 at 166.994 kb on + strand, within HMPREF1078_RS15375 at 166.994 kb on + strand, within HMPREF1078_RS15375 at 166.995 kb on - strand, within HMPREF1078_RS15375 at 167.063 kb on + strand, within HMPREF1078_RS15375 at 167.092 kb on + strand, within HMPREF1078_RS15375 at 167.092 kb on + strand, within HMPREF1078_RS15375 at 167.092 kb on + strand, within HMPREF1078_RS15375 at 167.092 kb on + strand, within HMPREF1078_RS15375 at 167.092 kb on + strand, within HMPREF1078_RS15375 at 167.118 kb on - strand, within HMPREF1078_RS15375 at 167.190 kb on + strand, within HMPREF1078_RS15375 at 167.201 kb on + strand, within HMPREF1078_RS15375 at 167.202 kb on - strand, within HMPREF1078_RS15375 at 167.205 kb on + strand, within HMPREF1078_RS15375 at 167.220 kb on + strand, within HMPREF1078_RS15375
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 165,071 + +2.0 165,091 + +1.8 165,091 + +0.8 165,091 + -0.3 165,092 - -1.8 165,094 + -0.1 165,094 + +1.5 165,095 - +0.3 165,099 - -0.8 165,102 + -0.5 165,147 + +1.1 165,148 - -1.4 165,148 - -1.7 165,177 + +0.5 165,190 - -0.4 165,197 + -0.6 165,201 + -2.3 165,217 - -0.1 165,234 + -1.0 165,255 + +2.9 165,256 - -2.2 165,264 + +0.5 165,268 + -1.5 165,269 - -1.1 165,269 - -0.8 165,269 - +0.6 165,323 - -1.3 165,328 - -1.5 165,350 - -2.1 165,379 - -0.1 165,383 + -0.3 165,383 + -1.3 165,383 + +1.0 165,386 - +0.5 165,394 - +0.5 165,403 + +1.3 165,403 + -1.5 165,404 - +1.0 165,404 - -0.2 165,407 + -1.3 165,410 + +1.5 165,410 + -3.9 165,414 + -2.0 165,415 - +0.8 165,415 - -0.4 165,415 - +0.4 165,417 + +1.0 165,418 - +1.2 165,418 - -1.7 165,423 + +1.5 165,424 - -2.0 165,424 - +1.3 165,428 - -2.0 165,428 - +0.2 165,437 + +0.5 165,438 - +0.5 165,438 - -2.0 165,447 - +3.5 165,447 - -0.5 165,447 - -1.0 165,450 + -1.5 165,450 + -0.5 165,450 + -1.1 165,450 + +1.5 165,451 - -0.1 165,454 - -0.1 165,454 - -0.1 165,454 - +0.6 165,456 + -0.5 165,457 - -2.5 165,457 - +0.5 165,474 - +2.2 165,476 + -0.8 165,479 + -1.2 165,479 + -1.5 165,480 - -1.2 165,480 - -1.5 165,480 - -1.2 165,480 - -0.2 165,480 - -2.0 165,483 + +0.5 165,483 + -0.5 165,484 - +4.0 165,500 - -1.5 165,517 - -2.3 165,520 - +0.6 165,543 + +2.6 165,544 - -2.3 165,544 - -0.8 165,560 - +0.8 165,606 - +0.6 165,617 - +1.3 165,617 - +0.5 165,757 - +2.5 165,819 - -2.6 165,820 + -0.4 165,829 + +0.2 165,872 + +0.0 165,873 - -0.5 165,873 - -2.5 165,874 + +1.5 165,875 - -1.4 165,875 - -1.8 165,875 - -1.1 165,875 - -1.3 165,879 - -1.7 165,879 - -1.8 165,900 + -1.5 165,908 + -0.3 165,911 - +1.1 165,935 - +0.5 165,967 - HMPREF1078_RS15370 0.11 +1.5 165,969 + HMPREF1078_RS15370 0.12 +0.5 166,008 + HMPREF1078_RS15370 0.25 -2.8 166,015 + HMPREF1078_RS15370 0.28 -2.3 166,015 + HMPREF1078_RS15370 0.28 -3.2 166,015 + HMPREF1078_RS15370 0.28 -2.0 166,016 - HMPREF1078_RS15370 0.28 -3.0 166,016 - HMPREF1078_RS15370 0.28 +0.0 166,021 + HMPREF1078_RS15370 0.30 +0.5 166,022 - HMPREF1078_RS15370 0.30 -1.5 166,060 + HMPREF1078_RS15370 0.43 -2.1 166,060 + HMPREF1078_RS15370 0.43 +0.1 166,060 + HMPREF1078_RS15370 0.43 -1.3 166,060 + HMPREF1078_RS15370 0.43 -2.5 166,060 + HMPREF1078_RS15370 0.43 -2.6 166,061 - HMPREF1078_RS15370 0.44 -2.8 166,061 - HMPREF1078_RS15370 0.44 -2.9 166,062 + HMPREF1078_RS15370 0.44 -3.0 166,062 + HMPREF1078_RS15370 0.44 -2.1 166,063 - HMPREF1078_RS15370 0.44 -1.1 166,063 - HMPREF1078_RS15370 0.44 -1.7 166,063 - HMPREF1078_RS15370 0.44 -1.5 166,063 - HMPREF1078_RS15370 0.44 +1.0 166,063 - HMPREF1078_RS15370 0.44 -1.3 166,070 - HMPREF1078_RS15370 0.47 -0.8 166,075 + HMPREF1078_RS15370 0.49 -1.8 166,081 + HMPREF1078_RS15370 0.51 -0.5 166,083 + HMPREF1078_RS15370 0.51 -2.0 166,084 - HMPREF1078_RS15370 0.52 -1.8 166,087 + HMPREF1078_RS15370 0.53 +1.0 166,092 + HMPREF1078_RS15370 0.55 -2.9 166,125 + HMPREF1078_RS15370 0.66 -1.0 166,125 + HMPREF1078_RS15370 0.66 -1.4 166,125 + HMPREF1078_RS15370 0.66 +0.5 166,126 - HMPREF1078_RS15370 0.66 -2.1 166,150 - HMPREF1078_RS15370 0.75 -2.4 166,746 + -2.6 166,781 - +0.8 166,806 + -4.6 166,807 - -1.1 166,827 + +1.0 166,827 + -1.7 166,827 + -1.8 166,898 + -2.0 166,899 - -1.7 166,899 - -0.9 166,911 + -0.7 166,911 + -3.0 166,912 - -1.5 166,914 + -2.8 166,914 + -1.0 166,915 - -0.1 166,915 - +1.1 166,966 - -1.8 166,980 + -1.4 166,988 + HMPREF1078_RS15375 0.10 -1.5 166,988 + HMPREF1078_RS15375 0.10 -1.7 166,988 + HMPREF1078_RS15375 0.10 +0.3 166,989 - HMPREF1078_RS15375 0.10 +0.8 166,990 + HMPREF1078_RS15375 0.10 -0.6 166,990 + HMPREF1078_RS15375 0.10 -1.5 166,990 + HMPREF1078_RS15375 0.10 +1.8 166,990 + HMPREF1078_RS15375 0.10 -1.3 166,990 + HMPREF1078_RS15375 0.10 -1.2 166,991 - HMPREF1078_RS15375 0.10 -1.9 166,991 - HMPREF1078_RS15375 0.10 -1.8 166,991 - HMPREF1078_RS15375 0.10 -0.6 166,991 - HMPREF1078_RS15375 0.10 +1.2 166,991 - HMPREF1078_RS15375 0.10 -2.8 166,991 - HMPREF1078_RS15375 0.10 +1.1 166,991 - HMPREF1078_RS15375 0.10 -1.5 166,991 - HMPREF1078_RS15375 0.10 -2.2 166,991 - HMPREF1078_RS15375 0.10 -2.1 166,994 + HMPREF1078_RS15375 0.10 +0.1 166,994 + HMPREF1078_RS15375 0.10 -2.5 166,994 + HMPREF1078_RS15375 0.10 -0.8 166,995 - HMPREF1078_RS15375 0.10 -2.0 167,063 + HMPREF1078_RS15375 0.13 -0.6 167,092 + HMPREF1078_RS15375 0.14 -0.1 167,092 + HMPREF1078_RS15375 0.14 -0.7 167,092 + HMPREF1078_RS15375 0.14 -2.7 167,092 + HMPREF1078_RS15375 0.14 -2.4 167,092 + HMPREF1078_RS15375 0.14 -0.4 167,118 - HMPREF1078_RS15375 0.14 -0.3 167,190 + HMPREF1078_RS15375 0.17 -0.5 167,201 + HMPREF1078_RS15375 0.17 -0.7 167,202 - HMPREF1078_RS15375 0.17 -0.5 167,205 + HMPREF1078_RS15375 0.17 -1.7 167,220 + HMPREF1078_RS15375 0.18 -1.5
Or see this region's nucleotide sequence