Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13430 and HMPREF1078_RS13435 are separated by 35 nucleotides HMPREF1078_RS13435 and HMPREF1078_RS13440 are separated by 216 nucleotides
HMPREF1078_RS13430: HMPREF1078_RS13430 - Gfo/Idh/MocA family oxidoreductase, at 124,685 to 126,070
_RS13430
HMPREF1078_RS13435: HMPREF1078_RS13435 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 126,106 to 127,686
_RS13435
HMPREF1078_RS13440: HMPREF1078_RS13440 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 127,903 to 131,001
_RS13440
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.139 kb on - strand, within HMPREF1078_RS13430 at 125.241 kb on - strand, within HMPREF1078_RS13430 at 125.241 kb on - strand, within HMPREF1078_RS13430 at 125.273 kb on - strand, within HMPREF1078_RS13430 at 125.320 kb on - strand, within HMPREF1078_RS13430 at 125.320 kb on - strand, within HMPREF1078_RS13430 at 125.431 kb on - strand, within HMPREF1078_RS13430 at 125.443 kb on - strand, within HMPREF1078_RS13430 at 125.443 kb on - strand, within HMPREF1078_RS13430 at 125.468 kb on - strand, within HMPREF1078_RS13430 at 125.484 kb on - strand, within HMPREF1078_RS13430 at 125.525 kb on - strand, within HMPREF1078_RS13430 at 125.593 kb on - strand, within HMPREF1078_RS13430 at 125.671 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.765 kb on - strand, within HMPREF1078_RS13430 at 125.903 kb on - strand, within HMPREF1078_RS13430 at 125.905 kb on - strand, within HMPREF1078_RS13430 at 125.905 kb on - strand, within HMPREF1078_RS13430 at 125.908 kb on - strand, within HMPREF1078_RS13430 at 125.976 kb on - strand at 125.976 kb on - strand at 126.020 kb on - strand at 126.050 kb on - strand at 126.076 kb on - strand at 126.076 kb on - strand at 126.076 kb on - strand at 126.086 kb on - strand at 126.108 kb on - strand at 126.184 kb on - strand at 126.290 kb on - strand, within HMPREF1078_RS13435 at 126.351 kb on - strand, within HMPREF1078_RS13435 at 126.389 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.474 kb on - strand, within HMPREF1078_RS13435 at 126.474 kb on - strand, within HMPREF1078_RS13435 at 126.520 kb on - strand, within HMPREF1078_RS13435 at 126.600 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.795 kb on - strand, within HMPREF1078_RS13435 at 126.795 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.814 kb on - strand, within HMPREF1078_RS13435 at 126.883 kb on - strand, within HMPREF1078_RS13435 at 127.027 kb on - strand, within HMPREF1078_RS13435 at 127.036 kb on - strand, within HMPREF1078_RS13435 at 127.108 kb on - strand, within HMPREF1078_RS13435 at 127.108 kb on - strand, within HMPREF1078_RS13435 at 127.108 kb on - strand, within HMPREF1078_RS13435 at 127.129 kb on - strand, within HMPREF1078_RS13435 at 127.141 kb on - strand, within HMPREF1078_RS13435 at 127.143 kb on - strand, within HMPREF1078_RS13435 at 127.143 kb on - strand, within HMPREF1078_RS13435 at 127.178 kb on - strand, within HMPREF1078_RS13435 at 127.178 kb on - strand, within HMPREF1078_RS13435 at 127.209 kb on - strand, within HMPREF1078_RS13435 at 127.222 kb on - strand, within HMPREF1078_RS13435 at 127.293 kb on - strand, within HMPREF1078_RS13435 at 127.293 kb on - strand, within HMPREF1078_RS13435 at 127.367 kb on - strand, within HMPREF1078_RS13435 at 127.367 kb on - strand, within HMPREF1078_RS13435 at 127.399 kb on - strand, within HMPREF1078_RS13435 at 127.399 kb on - strand, within HMPREF1078_RS13435 at 127.399 kb on - strand, within HMPREF1078_RS13435 at 127.401 kb on - strand, within HMPREF1078_RS13435 at 127.401 kb on - strand, within HMPREF1078_RS13435 at 127.567 kb on - strand at 127.567 kb on - strand at 127.567 kb on - strand at 127.569 kb on - strand at 127.569 kb on - strand at 127.666 kb on - strand at 127.681 kb on - strand at 127.700 kb on - strand at 127.746 kb on - strand at 127.800 kb on + strand at 127.806 kb on + strand at 127.894 kb on + strand at 127.947 kb on - strand at 127.967 kb on + strand at 128.020 kb on + strand at 128.031 kb on + strand at 128.031 kb on + strand at 128.031 kb on + strand at 128.031 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.037 kb on + strand at 128.038 kb on - strand at 128.046 kb on - strand at 128.060 kb on - strand at 128.060 kb on - strand at 128.118 kb on - strand at 128.237 kb on + strand, within HMPREF1078_RS13440 at 128.237 kb on + strand, within HMPREF1078_RS13440 at 128.238 kb on - strand, within HMPREF1078_RS13440 at 128.238 kb on - strand, within HMPREF1078_RS13440 at 128.243 kb on + strand, within HMPREF1078_RS13440 at 128.243 kb on + strand, within HMPREF1078_RS13440 at 128.243 kb on + strand, within HMPREF1078_RS13440 at 128.244 kb on - strand, within HMPREF1078_RS13440 at 128.244 kb on - strand, within HMPREF1078_RS13440 at 128.244 kb on - strand, within HMPREF1078_RS13440 at 128.258 kb on - strand, within HMPREF1078_RS13440 at 128.275 kb on - strand, within HMPREF1078_RS13440 at 128.296 kb on - strand, within HMPREF1078_RS13440 at 128.330 kb on + strand, within HMPREF1078_RS13440 at 128.333 kb on + strand, within HMPREF1078_RS13440 at 128.333 kb on + strand, within HMPREF1078_RS13440 at 128.356 kb on - strand, within HMPREF1078_RS13440 at 128.389 kb on - strand, within HMPREF1078_RS13440 at 128.417 kb on - strand, within HMPREF1078_RS13440 at 128.460 kb on + strand, within HMPREF1078_RS13440 at 128.463 kb on - strand, within HMPREF1078_RS13440 at 128.517 kb on + strand, within HMPREF1078_RS13440 at 128.684 kb on - strand, within HMPREF1078_RS13440
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 125,108 - HMPREF1078_RS13430 0.31 -1.3 125,108 - HMPREF1078_RS13430 0.31 -2.8 125,108 - HMPREF1078_RS13430 0.31 -2.5 125,108 - HMPREF1078_RS13430 0.31 -3.6 125,108 - HMPREF1078_RS13430 0.31 -0.6 125,139 - HMPREF1078_RS13430 0.33 +0.5 125,241 - HMPREF1078_RS13430 0.40 +0.5 125,241 - HMPREF1078_RS13430 0.40 -2.6 125,273 - HMPREF1078_RS13430 0.42 -1.0 125,320 - HMPREF1078_RS13430 0.46 -2.5 125,320 - HMPREF1078_RS13430 0.46 -1.8 125,431 - HMPREF1078_RS13430 0.54 -2.2 125,443 - HMPREF1078_RS13430 0.55 -1.7 125,443 - HMPREF1078_RS13430 0.55 -2.5 125,468 - HMPREF1078_RS13430 0.56 -0.6 125,484 - HMPREF1078_RS13430 0.58 -1.1 125,525 - HMPREF1078_RS13430 0.61 -1.8 125,593 - HMPREF1078_RS13430 0.66 -1.0 125,671 - HMPREF1078_RS13430 0.71 -3.0 125,711 - HMPREF1078_RS13430 0.74 -0.8 125,711 - HMPREF1078_RS13430 0.74 -2.9 125,711 - HMPREF1078_RS13430 0.74 -1.0 125,765 - HMPREF1078_RS13430 0.78 -2.8 125,903 - HMPREF1078_RS13430 0.88 -2.5 125,905 - HMPREF1078_RS13430 0.88 -1.5 125,905 - HMPREF1078_RS13430 0.88 -2.3 125,908 - HMPREF1078_RS13430 0.88 -0.5 125,976 - -0.0 125,976 - -3.5 126,020 - -2.3 126,050 - -0.0 126,076 - +0.5 126,076 - -1.2 126,076 - -1.9 126,086 - -0.8 126,108 - -0.6 126,184 - -1.6 126,290 - HMPREF1078_RS13435 0.12 -1.4 126,351 - HMPREF1078_RS13435 0.15 -1.8 126,389 - HMPREF1078_RS13435 0.18 -2.3 126,403 - HMPREF1078_RS13435 0.19 -3.6 126,403 - HMPREF1078_RS13435 0.19 -1.8 126,403 - HMPREF1078_RS13435 0.19 -1.8 126,474 - HMPREF1078_RS13435 0.23 +2.5 126,474 - HMPREF1078_RS13435 0.23 -0.5 126,520 - HMPREF1078_RS13435 0.26 -3.8 126,600 - HMPREF1078_RS13435 0.31 +1.5 126,681 - HMPREF1078_RS13435 0.36 -3.2 126,681 - HMPREF1078_RS13435 0.36 -0.6 126,681 - HMPREF1078_RS13435 0.36 -3.2 126,681 - HMPREF1078_RS13435 0.36 -2.9 126,795 - HMPREF1078_RS13435 0.44 -0.0 126,795 - HMPREF1078_RS13435 0.44 -3.5 126,797 - HMPREF1078_RS13435 0.44 +0.5 126,797 - HMPREF1078_RS13435 0.44 -2.2 126,797 - HMPREF1078_RS13435 0.44 +0.5 126,797 - HMPREF1078_RS13435 0.44 +0.5 126,814 - HMPREF1078_RS13435 0.45 -2.1 126,883 - HMPREF1078_RS13435 0.49 -1.3 127,027 - HMPREF1078_RS13435 0.58 -1.4 127,036 - HMPREF1078_RS13435 0.59 -1.8 127,108 - HMPREF1078_RS13435 0.63 -3.0 127,108 - HMPREF1078_RS13435 0.63 -0.0 127,108 - HMPREF1078_RS13435 0.63 -0.8 127,129 - HMPREF1078_RS13435 0.65 -0.8 127,141 - HMPREF1078_RS13435 0.65 -3.1 127,143 - HMPREF1078_RS13435 0.66 -1.5 127,143 - HMPREF1078_RS13435 0.66 +0.2 127,178 - HMPREF1078_RS13435 0.68 -1.6 127,178 - HMPREF1078_RS13435 0.68 -2.6 127,209 - HMPREF1078_RS13435 0.70 -0.5 127,222 - HMPREF1078_RS13435 0.71 -2.0 127,293 - HMPREF1078_RS13435 0.75 -2.6 127,293 - HMPREF1078_RS13435 0.75 -2.2 127,367 - HMPREF1078_RS13435 0.80 -2.3 127,367 - HMPREF1078_RS13435 0.80 -1.9 127,399 - HMPREF1078_RS13435 0.82 -0.0 127,399 - HMPREF1078_RS13435 0.82 +2.0 127,399 - HMPREF1078_RS13435 0.82 -1.0 127,401 - HMPREF1078_RS13435 0.82 +0.5 127,401 - HMPREF1078_RS13435 0.82 -1.0 127,567 - -1.0 127,567 - +1.5 127,567 - -0.5 127,569 - -0.5 127,569 - -1.5 127,666 - +0.7 127,681 - +0.5 127,700 - -0.6 127,746 - +0.7 127,800 + +1.5 127,806 + -1.7 127,894 + +0.7 127,947 - -2.0 127,967 + -2.8 128,020 + -1.9 128,031 + -1.3 128,031 + -2.2 128,031 + -2.9 128,031 + -0.4 128,037 + -0.0 128,037 + -0.3 128,037 + -0.2 128,037 + -2.4 128,037 + -0.6 128,037 + -1.3 128,037 + -2.5 128,037 + -2.3 128,037 + -0.5 128,037 + -1.6 128,037 + +0.2 128,038 - +0.8 128,046 - -1.8 128,060 - +0.2 128,060 - -3.8 128,118 - +0.9 128,237 + HMPREF1078_RS13440 0.11 -1.9 128,237 + HMPREF1078_RS13440 0.11 -0.5 128,238 - HMPREF1078_RS13440 0.11 -0.5 128,238 - HMPREF1078_RS13440 0.11 -1.3 128,243 + HMPREF1078_RS13440 0.11 -2.4 128,243 + HMPREF1078_RS13440 0.11 +0.8 128,243 + HMPREF1078_RS13440 0.11 -1.3 128,244 - HMPREF1078_RS13440 0.11 -0.8 128,244 - HMPREF1078_RS13440 0.11 -0.0 128,244 - HMPREF1078_RS13440 0.11 -0.8 128,258 - HMPREF1078_RS13440 0.11 +2.5 128,275 - HMPREF1078_RS13440 0.12 -1.0 128,296 - HMPREF1078_RS13440 0.13 +2.2 128,330 + HMPREF1078_RS13440 0.14 -0.5 128,333 + HMPREF1078_RS13440 0.14 -0.5 128,333 + HMPREF1078_RS13440 0.14 -1.8 128,356 - HMPREF1078_RS13440 0.15 +0.1 128,389 - HMPREF1078_RS13440 0.16 -2.4 128,417 - HMPREF1078_RS13440 0.17 -0.3 128,460 + HMPREF1078_RS13440 0.18 -1.3 128,463 - HMPREF1078_RS13440 0.18 -0.5 128,517 + HMPREF1078_RS13440 0.20 -2.7 128,684 - HMPREF1078_RS13440 0.25 -2.2
Or see this region's nucleotide sequence